Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0010772

Physical Location & Seq

Genomic Coordinates Reverse (-)

34155299 .. 34156927

Gene Structure 1629 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1323500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGGAAGATCTCCTTGTTGTGATGAGAGTGGCCTTAAGAAAGGCCCTTGGACTCCTGAAGAAGATCAAAAACTTATGAAATACATTCAGAAAAATGGCCATGGAAGCTGGAGAGCCCTTCCAAAACTTGCAGGGTTGAACAGATGCGGCAAGAGTTGCAGGTTAAGATGGACAAACTATCTTAGGCCGGATATAAAGAGAGGGAAGTTTTCTCAAGAAGAAGAACAAACAATTCTTAATCTCCATTCCATCCTCGGCAACAAATGGTCAGCAATTGCAAGCCACCTACCCGGTCGGACGGACAATGAAATAAAAAATTTCTGGAACACCCATTTGAAGAAAAAGCTAATTCAGATGGGTTTTGATCCGATGACTCACCGGCCCCGGACTGATATCTTCTCCAGCTTGCCTCATCTTCTAGCTCTTGTCAATTTGAAAGAGCTTCTAGACCATGGAAGCAGTCACCAATCCAGTTGGGATGAACAAGCTTTGAGATTACAAGCAGAAGCTGCTCAAATGGCTAGGCTTCAATACCTACAATGTCTCCTCCAACCTAATAACAATTCCTTTGGAGCTGCTACCCCAAACAACCTAAATGACTTTACTGACATGGAGACCATTAATCTTTTGAATTCACTCTGTTCATCTCAGCTGGATATTCAAAACCCTACTGCACAATACCCTGTTGGTAGTTTTCAACCAGTAGTCCAAGATAATTCAGTCCCTTTCTCTCATTTGCCTGACTTACAAGCCTATCCAACACCACCAAGCAAGGACATGGTTGATGATCAAGTTCCAGATCAATTTACTGCAGTTTTGAGCCAAGATGAAAGCTCTCCAAATAATCCATGGAATATTCCTTCATCTTCAAATACCACTCCATCTCCTACTTCGGTGGCTCCTCCCGTGACAGTGACAGAGACTTCAGTAAGCAACAACATGGGTGATGCTTGCAGCACTTCAAGCTATGGAGGAGTGGCTACTTCAGCGTGGTCTGACCTTCTTTTTGAGGACCCTTTTTTCAATGAGATTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

346

Amino Acids

38.37

Weight (kDa)

5.59

Isoelectric Point (pI)

50.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	9.9e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 77	1.4e-14	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	1.3e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 116	2.7e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10280 AT5G65230
fragaria_vesca	FvH4_1g20680
malus_domestica	MD01G1031700.v1.1 MD15G1323500.v1.1
prunus_persica	Prupe.6G188300_v2.0.a1
pyrus_communis	pycom01g05920 pycom15g28470
rosa_chinensis	RchiOBHm_Chr2g0113131
rosa_laevigata	RLG00000018046 RLG00000018792
rosa_multiflora	Rmu_sc0005949.1_g000025
rosa_roxburghii	Rroxscaffold_2G00129590 Rroxscaffold_2G00129720
rosa_rugosa	Rorug02G0185700
rosa_samantha	Rh2AG240000 Rh2BG253900 Rh2CG244000 Rh2DG247900
rosa_wichuraiana	Rw2G018780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	150
AciI	CCGC	1 cut(s)	147
AclWI	GGATC	1 cut(s)	359
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	2 cut(s)	316, 631
AcuI	CTGAAG	3 cut(s)	78, 909, 969
AflII	CTTAAG	1 cut(s)	35
Alw26I	GTCTC	3 cut(s)	548, 608, 914
AlwI	GGATC	1 cut(s)	359
AlwNI	CAGNNNCTG	1 cut(s)	509
AoxI	GGCC	5 cut(s)	31, 43, 97, 185, 380
ApeKI	GCWGC	3 cut(s)	509, 575, 954
ApoI	RAATTY	2 cut(s)	316, 631
ArsI	GACNNNNNNTTYG	2 cut(s)	989, 1021
AseI	ATTAAT	1 cut(s)	621
AspS9I	GGNCC	3 cut(s)	44, 381, 1012
AsuC2I	CCSGG	2 cut(s)	291, 385
AsuHPI	GGTGA	3 cut(s)	368, 455, 956
AvaII	GGWCC	1 cut(s)	1012
BalI	TGGCCA	1 cut(s)	99
BanII	GRGCYC	1 cut(s)	118
BbvI	GCAGC	3 cut(s)	496, 562, 966
BccI	CCATC	4 cut(s)	162, 257, 349, 889
BclI	TGATCA	1 cut(s)	787
BcnI	CCSGG	2 cut(s)	291, 385
BcoDI	GTCTC	3 cut(s)	548, 608, 914
BfaI	CTAG	3 cut(s)	419, 446, 522
BfmI	CTRYAG	1 cut(s)	810
BfrI	CTTAAG	1 cut(s)	35
BfuAI	ACCTGC	1 cut(s)	150
BglII	AGATCT	1 cut(s)	8
BisI	GCNGC	4 cut(s)	148, 510, 576, 955
BlsI	GCNGC	4 cut(s)	149, 511, 577, 956
Bme1390I	CCNGG	2 cut(s)	291, 385
Bme18I	GGWCC	1 cut(s)	1012
BmgT120I	GGNCC	3 cut(s)	44, 381, 1012
BmiI	GGNNCC	3 cut(s)	383, 900, 1014
BmrFI	CCNGG	2 cut(s)	291, 385
BmsI	GCATC	2 cut(s)	134, 937
BpmI	CTGGAG	2 cut(s)	130, 385
BpuEI	CTTGAG	1 cut(s)	198
BpuMI	CCSGG	2 cut(s)	291, 385
BsaI	GGTCTC	1 cut(s)	608
BsaJI	CCNNGG	6 cut(s)	47, 100, 253, 383, 451, 848
BsaXI	ACNNNNNCTCC	4 cut(s)	528, 558, 868, 898
Bse118I	RCCGGY	1 cut(s)	378
Bse1I	ACTGG	2 cut(s)	471, 701
BseDI	CCNNGG	6 cut(s)	47, 100, 253, 383, 451, 848
BseGI	GGATG	2 cut(s)	249, 484
BseMII	CTCAG	1 cut(s)	662
BseNI	ACTGG	2 cut(s)	471, 701
BseRI	GAGGAG	3 cut(s)	536, 891, 987
BseXI	GCAGC	3 cut(s)	496, 562, 966
BsgI	GTGCAG	1 cut(s)	657
Bsh1285I	CGRYCG	1 cut(s)	295
BshFI	GGCC	5 cut(s)	33, 45, 99, 187, 382
BsiEI	CGRYCG	1 cut(s)	295
BsiSI	CCGG	4 cut(s)	188, 291, 379, 385
BslFI	GGGAC	1 cut(s)	707
BsmAI	GTCTC	3 cut(s)	548, 608, 914
BsmFI	GGGAC	1 cut(s)	707
BsnI	GGCC	5 cut(s)	33, 45, 99, 187, 382
Bso31I	GGTCTC	1 cut(s)	608
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp143I	GATC	5 cut(s)	8, 64, 364, 787, 799
Bsp19I	CCATGG	3 cut(s)	100, 451, 848
BspACI	CCGC	1 cut(s)	147
BspANI	GGCC	5 cut(s)	33, 45, 99, 187, 382
BspCNI	CTCAG	1 cut(s)	661
BspLI	GGNNCC	3 cut(s)	383, 900, 1014
BspMAI	CTGCAG	1 cut(s)	814
BspMI	ACCTGC	1 cut(s)	150
BspPI	GGATC	1 cut(s)	359
BspTI	CTTAAG	1 cut(s)	35
BspTNI	GGTCTC	1 cut(s)	608
BsrFI	RCCGGY	1 cut(s)	378
BsrI	ACTGG	2 cut(s)	471, 701
BssAI	RCCGGY	1 cut(s)	378
BssECI	CCNNGG	6 cut(s)	47, 100, 253, 383, 451, 848
BssMI	GATC	5 cut(s)	8, 64, 364, 787, 799
BssT1I	CCWWGG	4 cut(s)	47, 100, 451, 848
Bst4CI	ACNGT	1 cut(s)	913
BstAFI	CTTAAG	1 cut(s)	35
BstAPI	GCANNNNNTGC	2 cut(s)	156, 509
BstC8I	GCNNGC	3 cut(s)	280, 407, 952
BstDEI	CTNAG	2 cut(s)	182, 648
BstDSI	CCRYGG	3 cut(s)	100, 451, 848
BstF5I	GGATG	2 cut(s)	249, 484
BstKTI	GATC	5 cut(s)	11, 67, 367, 790, 802
BstMAI	GTCTC	3 cut(s)	548, 608, 914
BstMBI	GATC	5 cut(s)	8, 64, 364, 787, 799
BstMCI	CGRYCG	1 cut(s)	295
BstMWI	GCNNNNNNNGC	6 cut(s)	105, 156, 509, 518, 963, 986
BstSCI	CCNGG	2 cut(s)	289, 383
BstSFI	CTRYAG	1 cut(s)	810
BstV1I	GCAGC	3 cut(s)	496, 562, 966
BstX2I	RGATCY	1 cut(s)	8
BstYI	RGATCY	1 cut(s)	8
BsuRI	GGCC	5 cut(s)	33, 45, 99, 187, 382
BtgI	CCRYGG	3 cut(s)	100, 451, 848
BtsCI	GGATG	2 cut(s)	249, 484
BtsIMutI	CAGTG	1 cut(s)	918
BveI	ACCTGC	1 cut(s)	150
Cac8I	GCNNGC	3 cut(s)	280, 407, 952
CaiI	CAGNNNCTG	1 cut(s)	509
Cfr10I	RCCGGY	1 cut(s)	378
Cfr13I	GGNCC	3 cut(s)	44, 381, 1012
CviAII	CATG	6 cut(s)	101, 452, 610, 778, 849, 940
DdeI	CTNAG	2 cut(s)	182, 648
DpnI	GATC	5 cut(s)	10, 66, 366, 789, 801
DpnII	GATC	5 cut(s)	8, 64, 364, 787, 799
EaeI	YGGCCR	1 cut(s)	97
Eco130I	CCWWGG	4 cut(s)	47, 100, 451, 848
Eco24I	GRGCYC	1 cut(s)	118
Eco31I	GGTCTC	1 cut(s)	608
Eco32I	GATATC	1 cut(s)	394
Eco47I	GGWCC	1 cut(s)	1012
Eco57I	CTGAAG	3 cut(s)	78, 909, 969
EcoO109I	RGGNCCY	2 cut(s)	44, 1012
EcoRI	GAATTC	1 cut(s)	631
EcoRV	GATATC	1 cut(s)	394
EcoT14I	CCWWGG	4 cut(s)	47, 100, 451, 848
EcoT38I	GRGCYC	1 cut(s)	118
ErhI	CCWWGG	4 cut(s)	47, 100, 451, 848
FaeI	CATG	6 cut(s)	104, 455, 613, 781, 852, 943
FaiI	YATR	9 cut(s)	77, 102, 194, 453, 611, 779, 850, 941, 969
FalI	AAGNNNNNCTT	1 cut(s)	30
FaqI	GGGAC	1 cut(s)	707
FatI	CATG	6 cut(s)	100, 451, 609, 777, 848, 939
FbaI	TGATCA	1 cut(s)	787
Fnu4HI	GCNGC	4 cut(s)	148, 510, 576, 955
FokI	GGATG	2 cut(s)	236, 491
FriOI	GRGCYC	1 cut(s)	118
Fsp4HI	GCNGC	4 cut(s)	148, 510, 576, 955
FspBI	CTAG	3 cut(s)	419, 446, 522
GluI	GCNGC	4 cut(s)	148, 510, 576, 955
GsuI	CTGGAG	2 cut(s)	130, 385
HaeIII	GGCC	5 cut(s)	33, 45, 99, 187, 382
HapII	CCGG	4 cut(s)	188, 291, 379, 385
Hin1II	CATG	6 cut(s)	104, 455, 613, 781, 852, 943
HindIII	AAGCTT	1 cut(s)	486
HinfI	GANTC	2 cut(s)	52, 373
HpaII	CCGG	4 cut(s)	188, 291, 379, 385
HphI	GGTGA	3 cut(s)	368, 455, 956
Hpy188I	TCNGA	5 cut(s)	90, 297, 354, 369, 997
Hpy188III	TCNNGA	5 cut(s)	56, 215, 322, 446, 797
HpyAV	CCTTC	3 cut(s)	128, 870, 1010
HpyCH4III	ACNGT	1 cut(s)	913
HpyCH4V	TGCA	6 cut(s)	131, 159, 278, 674, 812, 954
HpyF10VI	GCNNNNNNNGC	6 cut(s)	105, 156, 509, 518, 963, 986
HpyF3I	CTNAG	2 cut(s)	182, 648
Hsp92II	CATG	6 cut(s)	104, 455, 613, 781, 852, 943
Ksp22I	TGATCA	1 cut(s)	787
Kzo9I	GATC	5 cut(s)	8, 64, 364, 787, 799
LmnI	GCTCC	2 cut(s)	572, 904
Lsp1109I	GCAGC	3 cut(s)	496, 562, 966
LweI	GCATC	2 cut(s)	134, 937
MaeI	CTAG	3 cut(s)	419, 446, 522
MaeIII	GTNAC	3 cut(s)	461, 907, 913
MalI	GATC	5 cut(s)	10, 66, 366, 789, 801
MboI	GATC	5 cut(s)	8, 64, 364, 787, 799
MboII	GAAGA	9 cut(s)	18, 71, 74, 230, 233, 349, 388, 407, 858
MfeI	CAATTG	1 cut(s)	273
MflI	RGATCY	1 cut(s)	8
MhlI	GDGCHC	1 cut(s)	118
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	9 cut(s)	231, 273, 316, 348, 430, 562, 631, 715, 803
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	2 cut(s)	46, 367
MmeI	TCCRAC	3 cut(s)	275, 574, 782
MnlI	CCTC	7 cut(s)	194, 263, 420, 557, 912, 965, 1003
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	5 cut(s)	36, 164, 237, 621, 1036
Msp20I	TGGCCA	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	652
MspCI	CTTAAG	1 cut(s)	35
MspI	CCGG	4 cut(s)	188, 291, 379, 385
MspR9I	CCNGG	2 cut(s)	291, 385
MunI	CAATTG	1 cut(s)	273
MwoI	GCNNNNNNNGC	6 cut(s)	105, 156, 509, 518, 963, 986
NciI	CCSGG	2 cut(s)	291, 385
NcoI	CCATGG	3 cut(s)	100, 451, 848
NdeII	GATC	5 cut(s)	8, 64, 364, 787, 799
NlaIII	CATG	6 cut(s)	104, 455, 613, 781, 852, 943
NlaIV	GGNNCC	3 cut(s)	383, 900, 1014
NmeAIII	GCCGAG	1 cut(s)	234
NmuCI	GTSAC	3 cut(s)	461, 907, 913
PkrI	GCNGC	4 cut(s)	149, 511, 577, 956
PleI	GAGTC	2 cut(s)	46, 367
PpsI	GAGTC	2 cut(s)	46, 367
PpuMI	RGGWCCY	1 cut(s)	1012
PshBI	ATTAAT	1 cut(s)	621
Psp5II	RGGWCCY	1 cut(s)	1012
PspN4I	GGNNCC	3 cut(s)	383, 900, 1014
PspPI	GGNCC	3 cut(s)	44, 381, 1012
PspPPI	RGGWCCY	1 cut(s)	1012
PstI	CTGCAG	1 cut(s)	814
PstNI	CAGNNNCTG	1 cut(s)	509
PsuI	RGATCY	1 cut(s)	8
PvuII	CAGCTG	1 cut(s)	652
SaqAI	TTAA	5 cut(s)	36, 164, 237, 621, 1036
SatI	GCNGC	4 cut(s)	148, 510, 576, 955
Sau3AI	GATC	5 cut(s)	8, 64, 364, 787, 799
Sau96I	GGNCC	3 cut(s)	44, 381, 1012
SchI	GAGTC	2 cut(s)	46, 367
ScrFI	CCNGG	2 cut(s)	291, 385
SduI	GDGCHC	1 cut(s)	118
SfaNI	GCATC	2 cut(s)	134, 937
SfcI	CTRYAG	1 cut(s)	810
SinI	GGWCC	1 cut(s)	1012
SmlI	CTYRAG	2 cut(s)	35, 213
SmoI	CTYRAG	2 cut(s)	35, 213
Sse9I	AATT	9 cut(s)	231, 273, 316, 348, 430, 562, 631, 715, 803
SsiI	CCGC	1 cut(s)	147
SspI	AATATT	1 cut(s)	856
SspMI	CTAG	3 cut(s)	419, 446, 522
StyD4I	CCNGG	2 cut(s)	289, 383
StyI	CCWWGG	4 cut(s)	47, 100, 451, 848
TaaI	ACNGT	1 cut(s)	913
TasI	AATT	9 cut(s)	231, 273, 316, 348, 430, 562, 631, 715, 803
TauI	GCSGC	1 cut(s)	150
Tru1I	TTAA	5 cut(s)	36, 164, 237, 621, 1036
Tru9I	TTAA	5 cut(s)	36, 164, 237, 621, 1036
TscAI	CASTG	1 cut(s)	918
TseFI	GTSAC	3 cut(s)	461, 907, 913
TseI	GCWGC	3 cut(s)	509, 575, 954
Tsp45I	GTSAC	3 cut(s)	461, 907, 913
TspDTI	ATGAA	6 cut(s)	92, 321, 495, 633, 843, 852
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	1 cut(s)	918
Vha464I	CTTAAG	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	1012
VspI	ATTAAT	1 cut(s)	621
XapI	RAATTY	2 cut(s)	316, 631
XbaI	TCTAGA	1 cut(s)	445
XcmI	CCANNNNNNNNNTGG	1 cut(s)	846
XspI	CTAG	3 cut(s)	419, 446, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.