Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0010772

Physical Location & Seq

Genomic Coordinates Forward (+)

5856513 .. 5857585

Gene Structure 1073 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g05920.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGAAATACATTCAGAAAAATGGCCATGGAAGCTGGAGAGCCCTTCCAAAACTTGCAGGGTTGAATAGATGCGGCAAGAGTTGCAGGTTAAGATGGACAAACTATCTTAGGCCGGATATAAAGAGAGGGAAGTTTTCTCAAGAAGAAGAACAAACAATTCTGAATCTCCATTCCATTCTCGGCAACAAATGGTCAGCAATTGCAGGCCACCTACCAGGTCGGACGGACAATGAAATAAAAAATTTCTGGAATACCCATTTGAAGAAAAAGCTGATTCAGATGGGTTTTGATCCGATGACTCACCGGCCCCGGAGTGATATCTTCTCTAGCTTGCCTCATCTTCTAGCTCTTGTCAATTTGAAAGAGCTTTTAGACCATGGAAGCAATCACCAGTCCTGCTGGGATGAACAAGCTTTGAGATTACAAGCAGAAGCTTCTCAAATGGCTAGGCTTCAATATCTACAATGTCTCCTCCAACCTAATAACAATTCCTTTGGAGCTGCTACCGCAAACAACCTAAATGACTTCACTGACATGGAGACCATTAATCTTTTGAATTCACTCTGTTCATCTCAACTGGATATTCAAGACCCTACTGCACAATACCCAGTTGGTAATTTTCAACCAGTAGTCCAAGATAATTCAGTCCCTTTCTCTCATTTGCCTGACTTGCAAACATACCCAACACCACCAAACAAGGACATGGTTAATGATCGATCTCGATCCATTTACTGCTTTGAGCCAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

250

Amino Acids

28.41

Weight (kDa)

8.51

Isoelectric Point (pI)

51.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10280 AT5G65230
fragaria_vesca	FvH4_1g20680
malus_domestica	MD01G1031700.v1.1 MD15G1323500.v1.1
prunus_persica	Prupe.6G188300_v2.0.a1
pyrus_communis	pycom01g05920 pycom15g28470
rosa_chinensis	RchiOBHm_Chr2g0113131
rosa_laevigata	RLG00000018046 RLG00000018792
rosa_multiflora	Rmu_sc0005949.1_g000025
rosa_roxburghii	Rroxscaffold_2G00129590 Rroxscaffold_2G00129720
rosa_rugosa	Rorug02G0185700
rosa_samantha	Rh2AG240000 Rh2BG253900 Rh2CG244000 Rh2DG247900
rosa_wichuraiana	Rw2G018780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	75
AciI	CCGC	2 cut(s)	72, 507
AclWI	GGATC	2 cut(s)	284, 717
AcoI	YGGCCR	1 cut(s)	22
AcsI	RAATTY	2 cut(s)	241, 556
AgsI	TTSAA	7 cut(s)	64, 262, 361, 455, 556, 587, 623
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	8 cut(s)	33, 271, 330, 347, 367, 413, 434, 500
AluI	AGCT	8 cut(s)	33, 271, 330, 347, 367, 413, 434, 500
Alw26I	GTCTC	2 cut(s)	473, 533
AlwI	GGATC	2 cut(s)	284, 717
AoxI	GGCC	4 cut(s)	22, 110, 205, 305
ApeKI	GCWGC	1 cut(s)	500
ApoI	RAATTY	2 cut(s)	241, 556
AseI	ATTAAT	1 cut(s)	546
AspS9I	GGNCC	1 cut(s)	306
AsuC2I	CCSGG	1 cut(s)	310
AsuHPI	GGTGA	2 cut(s)	293, 380
BalI	TGGCCA	1 cut(s)	24
BanII	GRGCYC	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	487
BccI	CCATC	2 cut(s)	87, 274
BciT130I	CCWGG	1 cut(s)	216
BcnI	CCSGG	1 cut(s)	310
BcoDI	GTCTC	2 cut(s)	473, 533
BfaI	CTAG	3 cut(s)	327, 344, 447
BfuAI	ACCTGC	1 cut(s)	75
BisI	GCNGC	2 cut(s)	73, 501
BlsI	GCNGC	2 cut(s)	74, 502
Bme1390I	CCNGG	2 cut(s)	216, 310
BmgT120I	GGNCC	1 cut(s)	306
BmiI	GGNNCC	1 cut(s)	308
BmrFI	CCNGG	2 cut(s)	216, 310
BmrI	ACTGGG	1 cut(s)	602
BmsI	GCATC	1 cut(s)	59
BmuI	ACTGGG	1 cut(s)	602
BpmI	CTGGAG	1 cut(s)	55
BpuEI	CTTGAG	1 cut(s)	123
BpuMI	CCSGG	1 cut(s)	310
Bsa29I	ATCGAT	1 cut(s)	715
BsaBI	GATNNNNATC	1 cut(s)	721
BsaI	GGTCTC	1 cut(s)	533
BsaJI	CCNNGG	3 cut(s)	25, 308, 376
BsaXI	ACNNNNNCTCC	2 cut(s)	453, 483
Bse118I	RCCGGY	1 cut(s)	303
Bse1I	ACTGG	4 cut(s)	391, 582, 608, 626
Bse8I	GATNNNNATC	1 cut(s)	721
BseBI	CCWGG	1 cut(s)	216
BseCI	ATCGAT	1 cut(s)	715
BseDI	CCNNGG	3 cut(s)	25, 308, 376
BseGI	GGATG	1 cut(s)	409
BseJI	GATNNNNATC	1 cut(s)	721
BseNI	ACTGG	4 cut(s)	391, 582, 608, 626
BseRI	GAGGAG	1 cut(s)	461
BseXI	GCAGC	1 cut(s)	487
BseYI	CCCAGC	1 cut(s)	399
BsgI	GTGCAG	1 cut(s)	582
BshFI	GGCC	4 cut(s)	24, 112, 207, 307
BshVI	ATCGAT	1 cut(s)	715
BsiSI	CCGG	3 cut(s)	113, 304, 310
BslFI	GGGAC	1 cut(s)	632
BsmAI	GTCTC	2 cut(s)	473, 533
BsmFI	GGGAC	1 cut(s)	632
BsnI	GGCC	4 cut(s)	24, 112, 207, 307
Bso31I	GGTCTC	1 cut(s)	533
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp143I	GATC	4 cut(s)	289, 712, 716, 722
Bsp19I	CCATGG	2 cut(s)	25, 376
BspACI	CCGC	2 cut(s)	72, 507
BspANI	GGCC	4 cut(s)	24, 112, 207, 307
BspDI	ATCGAT	1 cut(s)	715
BspLI	GGNNCC	1 cut(s)	308
BspMI	ACCTGC	1 cut(s)	75
BspPI	GGATC	2 cut(s)	284, 717
BspTNI	GGTCTC	1 cut(s)	533
BsrFI	RCCGGY	1 cut(s)	303
BsrI	ACTGG	4 cut(s)	391, 582, 608, 626
BssAI	RCCGGY	1 cut(s)	303
BssECI	CCNNGG	3 cut(s)	25, 308, 376
BssMI	GATC	4 cut(s)	289, 712, 716, 722
BssT1I	CCWWGG	2 cut(s)	25, 376
Bst2UI	CCWGG	1 cut(s)	216
BstAPI	GCANNNNNTGC	1 cut(s)	81
BstC8I	GCNNGC	2 cut(s)	205, 332
BstDEI	CTNAG	1 cut(s)	107
BstDSI	CCRYGG	2 cut(s)	25, 376
BstF5I	GGATG	1 cut(s)	409
BstKTI	GATC	4 cut(s)	292, 715, 719, 725
BstMAI	GTCTC	2 cut(s)	473, 533
BstMBI	GATC	4 cut(s)	289, 712, 716, 722
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 81, 506, 670
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	2 cut(s)	214, 308
BstV1I	GCAGC	1 cut(s)	487
Bsu15I	ATCGAT	1 cut(s)	715
BsuRI	GGCC	4 cut(s)	24, 112, 207, 307
BsuTUI	ATCGAT	1 cut(s)	715
BtgI	CCRYGG	2 cut(s)	25, 376
BtsCI	GGATG	1 cut(s)	409
BtsIMutI	CAGTG	1 cut(s)	528
BveI	ACCTGC	1 cut(s)	75
Cac8I	GCNNGC	2 cut(s)	205, 332
Cfr10I	RCCGGY	1 cut(s)	303
Cfr13I	GGNCC	1 cut(s)	306
ClaI	ATCGAT	1 cut(s)	715
CsiI	ACCWGGT	1 cut(s)	214
CviAII	CATG	4 cut(s)	26, 377, 535, 703
DdeI	CTNAG	1 cut(s)	107
DpnI	GATC	4 cut(s)	291, 714, 718, 724
DpnII	GATC	4 cut(s)	289, 712, 716, 722
EaeI	YGGCCR	1 cut(s)	22
Eco130I	CCWWGG	2 cut(s)	25, 376
Eco24I	GRGCYC	1 cut(s)	43
Eco31I	GGTCTC	1 cut(s)	533
Eco32I	GATATC	1 cut(s)	319
EcoRI	GAATTC	1 cut(s)	556
EcoRII	CCWGG	1 cut(s)	214
EcoRV	GATATC	1 cut(s)	319
EcoT14I	CCWWGG	2 cut(s)	25, 376
EcoT38I	GRGCYC	1 cut(s)	43
ErhI	CCWWGG	2 cut(s)	25, 376
FaeI	CATG	4 cut(s)	29, 380, 538, 706
FaiI	YATR	6 cut(s)	27, 119, 378, 536, 679, 704
FaqI	GGGAC	1 cut(s)	632
FatI	CATG	4 cut(s)	25, 376, 534, 702
Fnu4HI	GCNGC	2 cut(s)	73, 501
FokI	GGATG	1 cut(s)	416
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	2 cut(s)	73, 501
FspBI	CTAG	3 cut(s)	327, 344, 447
GluI	GCNGC	2 cut(s)	73, 501
GsaI	CCCAGC	1 cut(s)	403
GsuI	CTGGAG	1 cut(s)	55
HaeIII	GGCC	4 cut(s)	24, 112, 207, 307
HapII	CCGG	3 cut(s)	113, 304, 310
Hin1II	CATG	4 cut(s)	29, 380, 538, 706
HindIII	AAGCTT	2 cut(s)	411, 432
HinfI	GANTC	3 cut(s)	163, 274, 298
HpaII	CCGG	3 cut(s)	113, 304, 310
HphI	GGTGA	2 cut(s)	293, 380
Hpy188I	TCNGA	5 cut(s)	15, 162, 222, 279, 294
Hpy188III	TCNNGA	4 cut(s)	140, 247, 587, 720
HpyAV	CCTTC	1 cut(s)	53
HpyCH4V	TGCA	5 cut(s)	56, 84, 203, 599, 673
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 81, 506, 670
HpyF3I	CTNAG	1 cut(s)	107
Hsp92II	CATG	4 cut(s)	29, 380, 538, 706
Kzo9I	GATC	4 cut(s)	289, 712, 716, 722
LmnI	GCTCC	1 cut(s)	497
Lsp1109I	GCAGC	1 cut(s)	487
LweI	GCATC	1 cut(s)	59
MabI	ACCWGGT	1 cut(s)	214
MaeI	CTAG	3 cut(s)	327, 344, 447
MalI	GATC	4 cut(s)	291, 714, 718, 724
MboI	GATC	4 cut(s)	289, 712, 716, 722
MboII	GAAGA	5 cut(s)	155, 158, 274, 313, 332
MfeI	CAATTG	1 cut(s)	198
MhlI	GDGCHC	1 cut(s)	43
MlsI	TGGCCA	1 cut(s)	24
MluCI	AATT	8 cut(s)	156, 198, 241, 355, 487, 556, 616, 640
MluNI	TGGCCA	1 cut(s)	24
MlyI	GAGTC	1 cut(s)	292
MmeI	TCCRAC	2 cut(s)	200, 499
MnlI	CCTC	3 cut(s)	119, 345, 482
Mox20I	TGGCCA	1 cut(s)	24
MscI	TGGCCA	1 cut(s)	24
MseI	TTAA	3 cut(s)	89, 546, 708
MslI	CAYNNNNRTG	1 cut(s)	533
Msp20I	TGGCCA	1 cut(s)	24
MspI	CCGG	3 cut(s)	113, 304, 310
MspR9I	CCNGG	2 cut(s)	216, 310
MunI	CAATTG	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	4 cut(s)	30, 81, 506, 670
NciI	CCSGG	1 cut(s)	310
NcoI	CCATGG	2 cut(s)	25, 376
NdeII	GATC	4 cut(s)	289, 712, 716, 722
NlaIII	CATG	4 cut(s)	29, 380, 538, 706
NlaIV	GGNNCC	1 cut(s)	308
NmeAIII	GCCGAG	1 cut(s)	159
PfeI	GAWTC	2 cut(s)	163, 274
PkrI	GCNGC	2 cut(s)	74, 502
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
PshBI	ATTAAT	1 cut(s)	546
Psp6I	CCWGG	1 cut(s)	214
PspFI	CCCAGC	1 cut(s)	399
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	1 cut(s)	308
PspPI	GGNCC	1 cut(s)	306
RseI	CAYNNNNRTG	1 cut(s)	533
SaqAI	TTAA	3 cut(s)	89, 546, 708
SatI	GCNGC	2 cut(s)	73, 501
Sau3AI	GATC	4 cut(s)	289, 712, 716, 722
Sau96I	GGNCC	1 cut(s)	306
SchI	GAGTC	1 cut(s)	292
ScrFI	CCNGG	2 cut(s)	216, 310
SduI	GDGCHC	1 cut(s)	43
SexAI	ACCWGGT	1 cut(s)	214
SfaNI	GCATC	1 cut(s)	59
SmiMI	CAYNNNNRTG	1 cut(s)	533
SmlI	CTYRAG	1 cut(s)	138
SmoI	CTYRAG	1 cut(s)	138
Sse9I	AATT	8 cut(s)	156, 198, 241, 355, 487, 556, 616, 640
SsiI	CCGC	2 cut(s)	72, 507
SspMI	CTAG	3 cut(s)	327, 344, 447
StyD4I	CCNGG	2 cut(s)	214, 308
StyI	CCWWGG	2 cut(s)	25, 376
TaqI	TCGA	2 cut(s)	715, 721
TasI	AATT	8 cut(s)	156, 198, 241, 355, 487, 556, 616, 640
TauI	GCSGC	1 cut(s)	75
TfiI	GAWTC	2 cut(s)	163, 274
Tru1I	TTAA	3 cut(s)	89, 546, 708
Tru9I	TTAA	3 cut(s)	89, 546, 708
TscAI	CASTG	1 cut(s)	535
TseI	GCWGC	1 cut(s)	500
TspDTI	ATGAA	4 cut(s)	17, 246, 420, 558
TspGWI	ACGGA	1 cut(s)	239
TspRI	CASTG	1 cut(s)	535
VspI	ATTAAT	1 cut(s)	546
XapI	RAATTY	2 cut(s)	241, 556
XspI	CTAG	3 cut(s)	327, 344, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.