FvH4_1g20680
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0010772
Physical Location & Seq
Reverse (-)
12839978 .. 12844695
4718 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g20680.t1

Sequence Viewer

Length: 1050 bp
ATGGGAAGGTCTCCGTGTTGCGATGATAGTGGACTCAAGAAAGGTCCCTGGACTCCTGAAGAAGATCAGAAGCTCATGAATTACATACAGAAACACGGTCATGGGAGCTGGAGAGCCCTTCCCAAACTTGCAGGGTTGAACAGATGTGGCAAGAGTTGCAGGCTAAGATGGACAAACTACCTTAGGCCAGATATAAAGAGAGGCAAATTTTCCCAAGAAGAAGAGCAAACAATTCTGAATCTTCATTCCATCCTTGGCAACAAATGGTCAGCAATTGCAAGCCACCTACCGGGTAGGACGGATAACGAAATCAAGAATTTCTGGAACACTCATTTGAAGAAAAAGCTGATTCAGATGGGTTTTGATCCGATGACCCACCGGCCTCGAACTGACATCTTCTCCAGTTTGCCTCACCTTCTAGCTCTTGTCAATTTGAAAGAGCTTATTGACCAAGGCAGCAGCCAGGCATCTTGGGATGAACAAGCCTTGAGACTACAAGCAGAAGCTGCTCAAATGGCAAAAATTCAATACCTACAATACCTCATCCAACCTCAAGTTTCTACCTCAAACAACCTAAGCGATTTCACTGACATTGAGACCATTGGTCTGTTGAATTCACTCTGCTCATCAATCAAAGATGTTAATCCAGTGTTTGGTTCATCGCGGTTGGAAACCTCAGCACAATACCTTGGGTCATCCTCTGTCCAGGATTCAATTCCTTTCTCTCCTTTGCCTGATTTGCAAATAGTACCCTCCTCTGCTTATCAAAAGGACATGATCATTAATCAAGCTCAAGATCAATTTACAGTGTTGAGCCAAATGGACAACTCTCCCAACAATGTTTCATGGAATATCCCTTCGTCTTCCAATACCAGTACTCCCTCTCCTCCTCCATTGGCGGTTCCTCCGGTGACGGAGACTTCAACAAGCAATAATAATATGGGTGATACTTGTAGCACTACTACTTCAAGCTATGGAGGAGTGGCTACCAATTCTGTTTGGTCTGACTTGCTTCTGGAGGACTACCCGTTTTTCAATGAGATTTCTTAG

Protein Analysis

350

Amino Acids

38.8

Weight (kDa)

5.82

Isoelectric Point (pI)

48.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 1.3e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 77 2e-14 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 1.3e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 116 2.9e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010772)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10280 AT5G65230
fragaria_vesca FvH4_1g20680
malus_domestica MD01G1031700.v1.1 MD15G1323500.v1.1
prunus_persica Prupe.6G188300_v2.0.a1
pyrus_communis pycom01g05920 pycom15g28470
rosa_chinensis RchiOBHm_Chr2g0113131
rosa_laevigata RLG00000018046 RLG00000018792
rosa_multiflora Rmu_sc0005949.1_g000025
rosa_roxburghii Rroxscaffold_2G00129590 Rroxscaffold_2G00129720
rosa_rugosa Rorug02G0185700
rosa_samantha Rh2AG240000 Rh2BG253900 Rh2CG244000 Rh2DG247900
rosa_wichuraiana Rw2G018780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 653
AccII CGCG 1 cut(s) 664
AciI CCGC 2 cut(s) 664, 899
AclWI GGATC 1 cut(s) 359
AcsI RAATTY 4 cut(s) 206, 316, 522, 613
AcuI CTGAAG 1 cut(s) 78
AfaI GTAC 2 cut(s) 750, 877
AfiI CCNNNNNNNGG 2 cut(s) 289, 653
AgsI TTSAA 9 cut(s) 139, 337, 436, 527, 613, 714, 924, 969, 1036
AhdI GACNNNNNGTC 1 cut(s) 603
AjnI CCWGG 3 cut(s) 47, 462, 705
AluBI AGCT 8 cut(s) 73, 108, 346, 422, 442, 506, 791, 972
AluI AGCT 8 cut(s) 73, 108, 346, 422, 442, 506, 791, 972
Alw26I GTCTC 4 cut(s) 15, 484, 590, 911
AlwI GGATC 1 cut(s) 359
AlwNI CAGNNNCTG 1 cut(s) 506
AoxI GGCC 2 cut(s) 185, 380
ApeKI GCWGC 3 cut(s) 456, 459, 506
ApoI RAATTY 4 cut(s) 206, 316, 522, 613
AseI ATTAAT 1 cut(s) 783
AspS9I GGNCC 1 cut(s) 44
AsuC2I CCSGG 1 cut(s) 291
AsuHPI GGTGA 3 cut(s) 404, 922, 956
AvaII GGWCC 1 cut(s) 44
AxyI CCTNAGG 1 cut(s) 182
BanII GRGCYC 1 cut(s) 118
BbsI GAAGAC 1 cut(s) 855
BbvCI CCTCAGC 1 cut(s) 676
BbvI GCAGC 3 cut(s) 468, 471, 493
BccI CCATC 3 cut(s) 162, 257, 349
BciT130I CCWGG 3 cut(s) 49, 464, 707
BclI TGATCA 1 cut(s) 777
BcnI CCSGG 1 cut(s) 291
BcoDI GTCTC 4 cut(s) 15, 484, 590, 911
BfaI CTAG 1 cut(s) 419
BisI GCNGC 3 cut(s) 457, 460, 507
BlsI GCNGC 3 cut(s) 458, 461, 508
BmcAI AGTACT 1 cut(s) 877
Bme1390I CCNGG 4 cut(s) 49, 291, 464, 707
Bme18I GGWCC 1 cut(s) 44
BmeRI GACNNNNNGTC 1 cut(s) 603
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 2 cut(s) 46, 903
BmrFI CCNGG 4 cut(s) 49, 291, 464, 707
BmsI GCATC 1 cut(s) 476
BpiI GAAGAC 1 cut(s) 855
BpmI CTGGAG 3 cut(s) 130, 385, 1037
Bpu10I CCTNAGC 2 cut(s) 575, 676
BpuEI CTTGAG 4 cut(s) 20, 508, 537, 777
BpuMI CCSGG 1 cut(s) 291
BsaBI GATNNNNATC 1 cut(s) 642
BsaI GGTCTC 2 cut(s) 15, 590
BsaJI CCNNGG 4 cut(s) 47, 253, 451, 688
BsaWI WCCGGW 1 cut(s) 907
BsaXI ACNNNNNCTCC 6 cut(s) 383, 413, 862, 868, 892, 898
Bsc4I CCNNNNNNNGG 2 cut(s) 289, 653
Bse118I RCCGGY 1 cut(s) 378
Bse1I ACTGG 3 cut(s) 402, 647, 873
Bse21I CCTNAGG 1 cut(s) 182
Bse8I GATNNNNATC 1 cut(s) 642
BseBI CCWGG 3 cut(s) 49, 464, 707
BseDI CCNNGG 4 cut(s) 47, 253, 451, 688
BseGI GGATG 4 cut(s) 249, 481, 543, 695
BseJI GATNNNNATC 1 cut(s) 642
BseLI CCNNNNNNNGG 2 cut(s) 289, 653
BseMII CTCAG 1 cut(s) 690
BseNI ACTGG 3 cut(s) 402, 647, 873
BseRI GAGGAG 4 cut(s) 745, 876, 879, 993
BseXI GCAGC 3 cut(s) 468, 471, 493
Bsh1236I CGCG 1 cut(s) 664
BshFI GGCC 2 cut(s) 187, 382
BsiSI CCGG 3 cut(s) 290, 379, 908
BslFI GGGAC 1 cut(s) 30
BslI CCNNNNNNNGG 2 cut(s) 289, 653
BsmAI GTCTC 4 cut(s) 15, 484, 590, 911
BsmFI GGGAC 1 cut(s) 30
BsnI GGCC 2 cut(s) 187, 382
Bso31I GGTCTC 2 cut(s) 15, 590
Bsp1286I GDGCHC 1 cut(s) 118
Bsp143I GATC 4 cut(s) 64, 364, 777, 796
BspACI CCGC 2 cut(s) 664, 899
BspANI GGCC 2 cut(s) 187, 382
BspCNI CTCAG 1 cut(s) 689
BspFNI CGCG 1 cut(s) 664
BspHI TCATGA 1 cut(s) 75
BspLI GGNNCC 2 cut(s) 46, 903
BspPI GGATC 1 cut(s) 359
BspQI GCTCTTC 1 cut(s) 216
BspTNI GGTCTC 2 cut(s) 15, 590
BsrFI RCCGGY 1 cut(s) 378
BsrI ACTGG 3 cut(s) 402, 647, 873
BssAI RCCGGY 1 cut(s) 378
BssECI CCNNGG 4 cut(s) 47, 253, 451, 688
BssMI GATC 4 cut(s) 64, 364, 777, 796
BssT1I CCWWGG 3 cut(s) 253, 451, 688
Bst2UI CCWGG 3 cut(s) 49, 464, 707
Bst4CI ACNGT 2 cut(s) 98, 808
Bst6I CTCTTC 1 cut(s) 216
BstAPI GCANNNNNTGC 2 cut(s) 156, 506
BstC8I GCNNGC 2 cut(s) 161, 280
BstDEI CTNAG 5 cut(s) 164, 182, 575, 676, 1047
BstF5I GGATG 4 cut(s) 249, 481, 543, 695
BstFNI CGCG 1 cut(s) 664
BstKTI GATC 4 cut(s) 67, 367, 780, 799
BstMAI GTCTC 4 cut(s) 15, 484, 590, 911
BstMBI GATC 4 cut(s) 64, 364, 777, 796
BstMWI GCNNNNNNNGC 4 cut(s) 156, 506, 515, 739
BstNI CCWGG 3 cut(s) 49, 464, 707
BstSCI CCNGG 4 cut(s) 47, 289, 462, 705
BstUI CGCG 1 cut(s) 664
BstV1I GCAGC 3 cut(s) 468, 471, 493
BstV2I GAAGAC 1 cut(s) 855
Bsu36I CCTNAGG 1 cut(s) 182
BsuRI GGCC 2 cut(s) 187, 382
BtgZI GCGATG 2 cut(s) 36, 645
BtsCI GGATG 4 cut(s) 249, 481, 543, 695
BtsIMutI CAGTG 3 cut(s) 585, 654, 813
Cac8I GCNNGC 2 cut(s) 161, 280
CaiI CAGNNNCTG 1 cut(s) 506
CciI TCATGA 1 cut(s) 75
Cfr10I RCCGGY 1 cut(s) 378
Cfr13I GGNCC 1 cut(s) 44
Csp6I GTAC 2 cut(s) 749, 876
CviAII CATG 4 cut(s) 76, 101, 775, 846
CviQI GTAC 2 cut(s) 749, 876
DdeI CTNAG 5 cut(s) 164, 182, 575, 676, 1047
DpnI GATC 4 cut(s) 66, 366, 779, 798
DpnII GATC 4 cut(s) 64, 364, 777, 796
DriI GACNNNNNGTC 1 cut(s) 603
Eam1104I CTCTTC 1 cut(s) 216
Eam1105I GACNNNNNGTC 1 cut(s) 603
EarI CTCTTC 1 cut(s) 216
Eco130I CCWWGG 3 cut(s) 253, 451, 688
Eco24I GRGCYC 1 cut(s) 118
Eco31I GGTCTC 2 cut(s) 15, 590
Eco47I GGWCC 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 78
Eco81I CCTNAGG 1 cut(s) 182
EcoO109I RGGNCCY 1 cut(s) 44
EcoRI GAATTC 1 cut(s) 613
EcoRII CCWGG 3 cut(s) 47, 462, 705
EcoT14I CCWWGG 3 cut(s) 253, 451, 688
EcoT38I GRGCYC 1 cut(s) 118
ErhI CCWWGG 3 cut(s) 253, 451, 688
FaeI CATG 4 cut(s) 79, 104, 778, 849
FaiI YATR 8 cut(s) 77, 86, 102, 194, 776, 847, 941, 975
FaqI GGGAC 1 cut(s) 30
FatI CATG 4 cut(s) 75, 100, 774, 845
FbaI TGATCA 1 cut(s) 777
Fnu4HI GCNGC 3 cut(s) 457, 460, 507
FokI GGATG 4 cut(s) 236, 488, 530, 682
FriOI GRGCYC 1 cut(s) 118
Fsp4HI GCNGC 3 cut(s) 457, 460, 507
FspBI CTAG 1 cut(s) 419
GluI GCNGC 3 cut(s) 457, 460, 507
GsuI CTGGAG 3 cut(s) 130, 385, 1037
HaeIII GGCC 2 cut(s) 187, 382
HapII CCGG 3 cut(s) 290, 379, 908
Hin1II CATG 4 cut(s) 79, 104, 778, 849
HinfI GANTC 5 cut(s) 33, 52, 238, 349, 710
HpaII CCGG 3 cut(s) 290, 379, 908
HphI GGTGA 3 cut(s) 404, 922, 956
Hpy166II GTNNAC 1 cut(s) 32
Hpy188I TCNGA 5 cut(s) 69, 237, 354, 369, 1006
Hpy188III TCNNGA 7 cut(s) 37, 56, 76, 313, 322, 794, 1016
Hpy8I GTNNAC 1 cut(s) 32
HpyAV CCTTC 3 cut(s) 128, 425, 867
HpyCH4III ACNGT 2 cut(s) 98, 808
HpyCH4V TGCA 4 cut(s) 131, 159, 278, 742
HpyF10VI GCNNNNNNNGC 4 cut(s) 156, 506, 515, 739
HpyF3I CTNAG 5 cut(s) 164, 182, 575, 676, 1047
Hsp92II CATG 4 cut(s) 79, 104, 778, 849
Ksp22I TGATCA 1 cut(s) 777
Kzo9I GATC 4 cut(s) 64, 364, 777, 796
LguI GCTCTTC 1 cut(s) 216
LmnI GCTCC 1 cut(s) 105
Lsp1109I GCAGC 3 cut(s) 468, 471, 493
LweI GCATC 1 cut(s) 476
MaeI CTAG 1 cut(s) 419
MaeIII GTNAC 1 cut(s) 910
MalI GATC 4 cut(s) 66, 366, 779, 798
MboI GATC 4 cut(s) 64, 364, 777, 796
MboII GAAGA 8 cut(s) 71, 74, 230, 233, 233, 349, 388, 855
MfeI CAATTG 1 cut(s) 273
MhlI GDGCHC 1 cut(s) 118
MlyI GAGTC 2 cut(s) 27, 46
MmeI TCCRAC 2 cut(s) 571, 648
MseI TTAA 2 cut(s) 642, 783
MslI CAYNNNNRTG 1 cut(s) 99
MspI CCGG 3 cut(s) 290, 379, 908
MspR9I CCNGG 4 cut(s) 49, 291, 464, 707
MunI CAATTG 1 cut(s) 273
MvaI CCWGG 3 cut(s) 49, 464, 707
MvnI CGCG 1 cut(s) 664
MwoI GCNNNNNNNGC 4 cut(s) 156, 506, 515, 739
NciI CCSGG 1 cut(s) 291
NdeII GATC 4 cut(s) 64, 364, 777, 796
NlaIII CATG 4 cut(s) 79, 104, 778, 849
NlaIV GGNNCC 2 cut(s) 46, 903
NmuCI GTSAC 1 cut(s) 910
PagI TCATGA 1 cut(s) 75
PciSI GCTCTTC 1 cut(s) 216
PfeI GAWTC 3 cut(s) 238, 349, 710
PflMI CCANNNNNTGG 1 cut(s) 653
PfoI TCCNGGA 1 cut(s) 705
PkrI GCNGC 3 cut(s) 458, 461, 508
PleI GAGTC 2 cut(s) 27, 46
PpsI GAGTC 2 cut(s) 27, 46
PpuMI RGGWCCY 1 cut(s) 44
PshBI ATTAAT 1 cut(s) 783
Psp5II RGGWCCY 1 cut(s) 44
Psp6I CCWGG 3 cut(s) 47, 462, 705
PspGI CCWGG 3 cut(s) 47, 462, 705
PspN4I GGNNCC 2 cut(s) 46, 903
PspPI GGNCC 1 cut(s) 44
PspPPI RGGWCCY 1 cut(s) 44
PstNI CAGNNNCTG 1 cut(s) 506
RsaI GTAC 2 cut(s) 750, 877
RsaNI GTAC 2 cut(s) 749, 876
RseI CAYNNNNRTG 1 cut(s) 99
SapI GCTCTTC 1 cut(s) 216
SaqAI TTAA 2 cut(s) 642, 783
SatI GCNGC 3 cut(s) 457, 460, 507
Sau3AI GATC 4 cut(s) 64, 364, 777, 796
Sau96I GGNCC 1 cut(s) 44
ScaI AGTACT 1 cut(s) 877
SchI GAGTC 2 cut(s) 27, 46
ScrFI CCNGG 4 cut(s) 49, 291, 464, 707
SduI GDGCHC 1 cut(s) 118
SfaNI GCATC 1 cut(s) 476
SinI GGWCC 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 4 cut(s) 35, 487, 552, 792
SmoI CTYRAG 4 cut(s) 35, 487, 552, 792
SsiI CCGC 2 cut(s) 664, 899
SspMI CTAG 1 cut(s) 419
StyD4I CCNGG 4 cut(s) 47, 289, 462, 705
StyI CCWWGG 3 cut(s) 253, 451, 688
TaaI ACNGT 2 cut(s) 98, 808
TaqI TCGA 1 cut(s) 385
TatI WGTACW 1 cut(s) 875
TfiI GAWTC 3 cut(s) 238, 349, 710
Tru1I TTAA 2 cut(s) 642, 783
Tru9I TTAA 2 cut(s) 642, 783
TscAI CASTG 3 cut(s) 592, 654, 813
TseFI GTSAC 1 cut(s) 910
TseI GCWGC 3 cut(s) 456, 459, 506
Tsp45I GTSAC 1 cut(s) 910
TspDTI ATGAA 5 cut(s) 92, 233, 492, 648, 834
TspGWI ACGGA 2 cut(s) 314, 929
TspRI CASTG 3 cut(s) 592, 654, 813
Van91I CCANNNNNTGG 1 cut(s) 653
VpaK11BI GGWCC 1 cut(s) 44
VspI ATTAAT 1 cut(s) 783
XapI RAATTY 4 cut(s) 206, 316, 522, 613
XspI CTAG 1 cut(s) 419
ZrmI AGTACT 1 cut(s) 877
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.