Rh2AG240000
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0010772
Physical Location & Seq
Reverse (-)
26179313 .. 26193423
14111 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG240000.1

Sequence Viewer

Length: 1050 bp
ATGGGAAGGTCTCCTTGTTGTGATGATAGTGGCCTCAAGAAAGGTCCCTGGACTCCTGAAGAAGATCAGAAGCTAATGAATTACATACAGAAACATGGCCATGGAAGCTGGAGAGCCCTTCCCAAACTTGCAGGGTTGAACAGATGTGGCAAGAGTTGCAGGTTAAGATGGACAAACTACCTTAGGCCAGATATAAAGAGAGGCAAATTTTCTCAAGAAGAAGAGCAAACAATTCTGAACCTTCATTCCATCCTTGGCAACAAATGGTCAGCAATTGCAAGCCACCTACCGGGTAGGACGGACAACGAAATCAAAAATTTCTGGAACACCCATTTGAAGAAAAAGCTGATTCAGATGGGTTTTGATCCGATGACCCACCGGCCTCGAACTGACATCTTCTCCAGCTTGCCACACCTTCTAGCTCTTGTCAATTTGAAAGATCTTATTGACCAAGGCAGCAGCCAGACATCTTGGGATGAACAAGCCTTGAGACTACAAGCAGAAGCTGCTCAAATGGCTAAAATTCAATACCTACAATACCTCCTCCAACCTCAAGCTTCTACCTCAAACAACCTAAGCGATTTCACTGACATGGAGACAATTGGTCTTTTGAATTCACTCTGTTCATCAATCAAAGATGTTAATCCAGTGTTTGGCTCATCTCAGTTGGAAACCTCAGCACAATACCTCGGGTCAACTTCTGTGCAGGATTCAATCCCTTTTTGCCCTTTACCTGATTTGCAAATGGTACCCTCCTCTGCTTATCAAAAGGACATGATCATTAATCAAGCTCCAGATCAGTTTACAGTGTTGAGCCAATTGGACAACTCTCCCAACAATAATTCATGGAATATTCCTTCCTCTTCAAATACTAGTACTGCCTCTCCTCCTTCTGTGGCGGTTCCTCCAGTGACGGAGACTTCAACAAGCAATAATAATATGGGTGATGCTTGCAGCACTACTACTTCAAGCTATGGAGGAGTGGCTACTGTTTCTGCTTGGTCTGACCTACTTCTGGAGGACTACCCGTTTTTCAATGAGATTTCTTAG

Protein Analysis

349

Amino Acids

38.67

Weight (kDa)

5.65

Isoelectric Point (pI)

48.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 1.3e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 77 2e-14 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 1.3e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 116 2.9e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010772)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10280 AT5G65230
fragaria_vesca FvH4_1g20680
malus_domestica MD01G1031700.v1.1 MD15G1323500.v1.1
prunus_persica Prupe.6G188300_v2.0.a1
pyrus_communis pycom01g05920 pycom15g28470
rosa_chinensis RchiOBHm_Chr2g0113131
rosa_laevigata RLG00000018046 RLG00000018792
rosa_multiflora Rmu_sc0005949.1_g000025
rosa_roxburghii Rroxscaffold_2G00129590 Rroxscaffold_2G00129720
rosa_rugosa Rorug02G0185700
rosa_samantha Rh2AG240000 Rh2BG253900 Rh2CG244000 Rh2DG247900
rosa_wichuraiana Rw2G018780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 150
Acc65I GGTACC 1 cut(s) 748
AccB1I GGYRCC 1 cut(s) 748
AccB7I CCANNNNNTGG 1 cut(s) 653
AciI CCGC 1 cut(s) 899
AclWI GGATC 1 cut(s) 359
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 4 cut(s) 206, 316, 522, 613
AcuI CTGAAG 1 cut(s) 78
AfaI GTAC 2 cut(s) 750, 877
AfiI CCNNNNNNNGG 3 cut(s) 289, 653, 1015
AhdI GACNNNNNGTC 1 cut(s) 603
AhlI ACTAGT 1 cut(s) 872
AjnI CCWGG 1 cut(s) 47
AloI GAACNNNNNNTCC 2 cut(s) 230, 262
AluBI AGCT 9 cut(s) 73, 108, 346, 405, 422, 506, 557, 791, 972
AluI AGCT 9 cut(s) 73, 108, 346, 405, 422, 506, 557, 791, 972
Alw26I GTCTC 4 cut(s) 15, 484, 590, 911
AlwI GGATC 1 cut(s) 359
AlwNI CAGNNNCTG 1 cut(s) 506
Ama87I CYCGRG 1 cut(s) 689
AoxI GGCC 4 cut(s) 31, 97, 185, 380
ApeKI GCWGC 4 cut(s) 456, 459, 506, 954
ApoI RAATTY 4 cut(s) 206, 316, 522, 613
AseI ATTAAT 1 cut(s) 783
Asp718I GGTACC 1 cut(s) 748
AspS9I GGNCC 1 cut(s) 44
AsuC2I CCSGG 1 cut(s) 291
AsuHPI GGTGA 1 cut(s) 956
AvaI CYCGRG 1 cut(s) 689
AvaII GGWCC 1 cut(s) 44
AxyI CCTNAGG 1 cut(s) 182
BalI TGGCCA 1 cut(s) 99
BanI GGYRCC 1 cut(s) 748
BanII GRGCYC 1 cut(s) 118
BbvCI CCTCAGC 1 cut(s) 676
BbvI GCAGC 4 cut(s) 468, 471, 493, 966
BccI CCATC 3 cut(s) 162, 257, 349
BciT130I CCWGG 1 cut(s) 49
BclI TGATCA 1 cut(s) 777
BcnI CCSGG 1 cut(s) 291
BcoDI GTCTC 4 cut(s) 15, 484, 590, 911
BcuI ACTAGT 1 cut(s) 872
BfaI CTAG 2 cut(s) 419, 873
BfuAI ACCTGC 1 cut(s) 150
BglII AGATCT 1 cut(s) 439
BisI GCNGC 4 cut(s) 457, 460, 507, 955
BlsI GCNGC 4 cut(s) 458, 461, 508, 956
BmcAI AGTACT 1 cut(s) 877
Bme1390I CCNGG 2 cut(s) 49, 291
Bme18I GGWCC 1 cut(s) 44
BmeRI GACNNNNNGTC 1 cut(s) 603
BmeT110I CYCGRG 1 cut(s) 689
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 3 cut(s) 46, 750, 903
BmrFI CCNGG 2 cut(s) 49, 291
BmsI GCATC 1 cut(s) 937
BpmI CTGGAG 5 cut(s) 130, 385, 777, 891, 1037
Bpu10I CCTNAGC 2 cut(s) 575, 676
BpuEI CTTGAG 4 cut(s) 20, 198, 508, 537
BpuMI CCSGG 1 cut(s) 291
BsaBI GATNNNNATC 1 cut(s) 642
BsaI GGTCTC 1 cut(s) 15
BsaJI CCNNGG 5 cut(s) 47, 100, 253, 451, 688
BsaXI ACNNNNNCTCC 6 cut(s) 383, 413, 525, 555, 868, 898
Bsc4I CCNNNNNNNGG 3 cut(s) 289, 653, 1015
Bse118I RCCGGY 1 cut(s) 378
Bse1I ACTGG 2 cut(s) 647, 908
Bse21I CCTNAGG 1 cut(s) 182
Bse8I GATNNNNATC 1 cut(s) 642
BseBI CCWGG 1 cut(s) 49
BseDI CCNNGG 5 cut(s) 47, 100, 253, 451, 688
BseGI GGATG 2 cut(s) 249, 481
BseJI GATNNNNATC 1 cut(s) 642
BseLI CCNNNNNNNGG 3 cut(s) 289, 653, 1015
BseMII CTCAG 2 cut(s) 677, 690
BseNI ACTGG 2 cut(s) 647, 908
BseRI GAGGAG 4 cut(s) 533, 745, 876, 993
BseXI GCAGC 4 cut(s) 468, 471, 493, 966
BsgI GTGCAG 1 cut(s) 725
BshFI GGCC 4 cut(s) 33, 99, 187, 382
BshNI GGYRCC 1 cut(s) 748
BsiHKCI CYCGRG 1 cut(s) 689
BsiSI CCGG 2 cut(s) 290, 379
BslFI GGGAC 1 cut(s) 30
BslI CCNNNNNNNGG 3 cut(s) 289, 653, 1015
BsmAI GTCTC 4 cut(s) 15, 484, 590, 911
BsmFI GGGAC 1 cut(s) 30
BsnI GGCC 4 cut(s) 33, 99, 187, 382
Bso31I GGTCTC 1 cut(s) 15
BsoBI CYCGRG 1 cut(s) 689
Bsp1286I GDGCHC 1 cut(s) 118
Bsp143I GATC 5 cut(s) 64, 364, 439, 777, 796
Bsp19I CCATGG 1 cut(s) 100
BspACI CCGC 1 cut(s) 899
BspANI GGCC 4 cut(s) 33, 99, 187, 382
BspCNI CTCAG 2 cut(s) 676, 689
BspLI GGNNCC 3 cut(s) 46, 750, 903
BspMI ACCTGC 1 cut(s) 150
BspPI GGATC 1 cut(s) 359
BspQI GCTCTTC 1 cut(s) 216
BspT107I GGYRCC 1 cut(s) 748
BspTNI GGTCTC 1 cut(s) 15
BsrFI RCCGGY 1 cut(s) 378
BsrI ACTGG 2 cut(s) 647, 908
BssAI RCCGGY 1 cut(s) 378
BssECI CCNNGG 5 cut(s) 47, 100, 253, 451, 688
BssMI GATC 5 cut(s) 64, 364, 439, 777, 796
BssT1I CCWWGG 3 cut(s) 100, 253, 451
Bst2UI CCWGG 1 cut(s) 49
Bst4CI ACNGT 2 cut(s) 808, 991
Bst6I CTCTTC 2 cut(s) 216, 868
BstAPI GCANNNNNTGC 2 cut(s) 156, 506
BstC8I GCNNGC 3 cut(s) 280, 407, 952
BstDEI CTNAG 5 cut(s) 182, 575, 663, 676, 1047
BstDSI CCRYGG 1 cut(s) 100
BstF5I GGATG 2 cut(s) 249, 481
BstKTI GATC 5 cut(s) 67, 367, 442, 780, 799
BstMAI GTCTC 4 cut(s) 15, 484, 590, 911
BstMBI GATC 5 cut(s) 64, 364, 439, 777, 796
BstMWI GCNNNNNNNGC 4 cut(s) 105, 156, 506, 515
BstNI CCWGG 1 cut(s) 49
BstSCI CCNGG 2 cut(s) 47, 289
BstV1I GCAGC 4 cut(s) 468, 471, 493, 966
BstX2I RGATCY 1 cut(s) 439
BstYI RGATCY 1 cut(s) 439
Bsu36I CCTNAGG 1 cut(s) 182
BsuRI GGCC 4 cut(s) 33, 99, 187, 382
BtgI CCRYGG 1 cut(s) 100
BtsCI GGATG 2 cut(s) 249, 481
BtsIMutI CAGTG 4 cut(s) 585, 654, 813, 915
BveI ACCTGC 1 cut(s) 150
Cac8I GCNNGC 3 cut(s) 280, 407, 952
CaiI CAGNNNCTG 1 cut(s) 506
Cfr10I RCCGGY 1 cut(s) 378
Cfr13I GGNCC 1 cut(s) 44
Csp6I GTAC 2 cut(s) 749, 876
CviAII CATG 5 cut(s) 95, 101, 592, 775, 846
CviQI GTAC 2 cut(s) 749, 876
DdeI CTNAG 5 cut(s) 182, 575, 663, 676, 1047
DpnI GATC 5 cut(s) 66, 366, 441, 779, 798
DpnII GATC 5 cut(s) 64, 364, 439, 777, 796
DriI GACNNNNNGTC 1 cut(s) 603
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 2 cut(s) 216, 868
Eam1105I GACNNNNNGTC 1 cut(s) 603
EarI CTCTTC 2 cut(s) 216, 868
Eco130I CCWWGG 3 cut(s) 100, 253, 451
Eco24I GRGCYC 1 cut(s) 118
Eco31I GGTCTC 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 78
Eco81I CCTNAGG 1 cut(s) 182
Eco88I CYCGRG 1 cut(s) 689
EcoO109I RGGNCCY 1 cut(s) 44
EcoRI GAATTC 1 cut(s) 613
EcoRII CCWGG 1 cut(s) 47
EcoT14I CCWWGG 3 cut(s) 100, 253, 451
EcoT38I GRGCYC 1 cut(s) 118
ErhI CCWWGG 3 cut(s) 100, 253, 451
FaeI CATG 5 cut(s) 98, 104, 595, 778, 849
FaiI YATR 9 cut(s) 86, 96, 102, 194, 593, 776, 847, 941, 975
FalI AAGNNNNNCTT 1 cut(s) 30
FaqI GGGAC 1 cut(s) 30
FatI CATG 5 cut(s) 94, 100, 591, 774, 845
FbaI TGATCA 1 cut(s) 777
Fnu4HI GCNGC 4 cut(s) 457, 460, 507, 955
FokI GGATG 2 cut(s) 236, 488
FriOI GRGCYC 1 cut(s) 118
Fsp4HI GCNGC 4 cut(s) 457, 460, 507, 955
FspBI CTAG 2 cut(s) 419, 873
GluI GCNGC 4 cut(s) 457, 460, 507, 955
GsuI CTGGAG 5 cut(s) 130, 385, 777, 891, 1037
HaeIII GGCC 4 cut(s) 33, 99, 187, 382
HapII CCGG 2 cut(s) 290, 379
Hin1II CATG 5 cut(s) 98, 104, 595, 778, 849
HincII GTYRAC 1 cut(s) 696
HindII GTYRAC 1 cut(s) 696
HindIII AAGCTT 1 cut(s) 555
HinfI GANTC 3 cut(s) 52, 349, 710
HpaII CCGG 2 cut(s) 290, 379
HphI GGTGA 1 cut(s) 956
Hpy166II GTNNAC 2 cut(s) 696, 804
Hpy188I TCNGA 5 cut(s) 69, 237, 354, 369, 1006
Hpy188III TCNNGA 6 cut(s) 37, 56, 215, 322, 794, 1016
Hpy8I GTNNAC 2 cut(s) 696, 804
HpyAV CCTTC 5 cut(s) 128, 251, 425, 867, 900
HpyCH4III ACNGT 2 cut(s) 808, 991
HpyCH4V TGCA 6 cut(s) 131, 159, 278, 706, 742, 954
HpyF10VI GCNNNNNNNGC 4 cut(s) 105, 156, 506, 515
HpyF3I CTNAG 5 cut(s) 182, 575, 663, 676, 1047
Hsp92II CATG 5 cut(s) 98, 104, 595, 778, 849
KpnI GGTACC 1 cut(s) 752
Ksp22I TGATCA 1 cut(s) 777
Kzo9I GATC 5 cut(s) 64, 364, 439, 777, 796
LguI GCTCTTC 1 cut(s) 216
LmnI GCTCC 1 cut(s) 796
Lsp1109I GCAGC 4 cut(s) 468, 471, 493, 966
LweI GCATC 1 cut(s) 937
MaeI CTAG 2 cut(s) 419, 873
MaeIII GTNAC 1 cut(s) 910
MalI GATC 5 cut(s) 66, 366, 441, 779, 798
MboI GATC 5 cut(s) 64, 364, 439, 777, 796
MboII GAAGA 7 cut(s) 71, 74, 230, 233, 349, 388, 855
MfeI CAATTG 3 cut(s) 273, 600, 818
MflI RGATCY 1 cut(s) 439
MhlI GDGCHC 1 cut(s) 118
MlsI TGGCCA 1 cut(s) 99
MluNI TGGCCA 1 cut(s) 99
MlyI GAGTC 1 cut(s) 46
MmeI TCCRAC 2 cut(s) 571, 648
Mox20I TGGCCA 1 cut(s) 99
MscI TGGCCA 1 cut(s) 99
MseI TTAA 3 cut(s) 164, 642, 783
MslI CAYNNNNRTG 2 cut(s) 99, 590
Msp20I TGGCCA 1 cut(s) 99
MspI CCGG 2 cut(s) 290, 379
MspR9I CCNGG 2 cut(s) 49, 291
MunI CAATTG 3 cut(s) 273, 600, 818
MvaI CCWGG 1 cut(s) 49
MwoI GCNNNNNNNGC 4 cut(s) 105, 156, 506, 515
NciI CCSGG 1 cut(s) 291
NcoI CCATGG 1 cut(s) 100
NdeII GATC 5 cut(s) 64, 364, 439, 777, 796
NlaIII CATG 5 cut(s) 98, 104, 595, 778, 849
NlaIV GGNNCC 3 cut(s) 46, 750, 903
NmuCI GTSAC 1 cut(s) 910
PciSI GCTCTTC 1 cut(s) 216
PfeI GAWTC 2 cut(s) 349, 710
PflMI CCANNNNNTGG 1 cut(s) 653
PkrI GCNGC 4 cut(s) 458, 461, 508, 956
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
PpuMI RGGWCCY 1 cut(s) 44
PshBI ATTAAT 1 cut(s) 783
Psp5II RGGWCCY 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 47
PspGI CCWGG 1 cut(s) 47
PspN4I GGNNCC 3 cut(s) 46, 750, 903
PspPI GGNCC 1 cut(s) 44
PspPPI RGGWCCY 1 cut(s) 44
PstNI CAGNNNCTG 1 cut(s) 506
PsuI RGATCY 1 cut(s) 439
RsaI GTAC 2 cut(s) 750, 877
RsaNI GTAC 2 cut(s) 749, 876
RseI CAYNNNNRTG 2 cut(s) 99, 590
SapI GCTCTTC 1 cut(s) 216
SaqAI TTAA 3 cut(s) 164, 642, 783
SatI GCNGC 4 cut(s) 457, 460, 507, 955
Sau3AI GATC 5 cut(s) 64, 364, 439, 777, 796
Sau96I GGNCC 1 cut(s) 44
ScaI AGTACT 1 cut(s) 877
SchI GAGTC 1 cut(s) 46
ScrFI CCNGG 2 cut(s) 49, 291
SduI GDGCHC 1 cut(s) 118
SfaNI GCATC 1 cut(s) 937
SinI GGWCC 1 cut(s) 44
SmiMI CAYNNNNRTG 2 cut(s) 99, 590
SmlI CTYRAG 4 cut(s) 35, 213, 487, 552
SmoI CTYRAG 4 cut(s) 35, 213, 487, 552
SpeI ACTAGT 1 cut(s) 872
SsiI CCGC 1 cut(s) 899
SspI AATATT 1 cut(s) 853
SspMI CTAG 2 cut(s) 419, 873
StyD4I CCNGG 2 cut(s) 47, 289
StyI CCWWGG 3 cut(s) 100, 253, 451
TaaI ACNGT 2 cut(s) 808, 991
TaqI TCGA 1 cut(s) 385
TatI WGTACW 1 cut(s) 875
TfiI GAWTC 2 cut(s) 349, 710
Tru1I TTAA 3 cut(s) 164, 642, 783
Tru9I TTAA 3 cut(s) 164, 642, 783
TscAI CASTG 4 cut(s) 592, 654, 813, 915
TseFI GTSAC 1 cut(s) 910
TseI GCWGC 4 cut(s) 456, 459, 506, 954
Tsp45I GTSAC 1 cut(s) 910
TspDTI ATGAA 5 cut(s) 92, 233, 492, 615, 834
TspGWI ACGGA 2 cut(s) 314, 929
TspRI CASTG 4 cut(s) 592, 654, 813, 915
Van91I CCANNNNNTGG 1 cut(s) 653
VpaK11BI GGWCC 1 cut(s) 44
VspI ATTAAT 1 cut(s) 783
XapI RAATTY 4 cut(s) 206, 316, 522, 613
XspI CTAG 2 cut(s) 419, 873
ZrmI AGTACT 1 cut(s) 877
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.