Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0010772

Physical Location & Seq

Genomic Coordinates Forward (+)

11167008 .. 11168337

Gene Structure 1330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1031700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGAAATACATTCAGAAAAATGGCCATGGAAGCTGGAGAGCCCTTCCAAAACTTGCAGGGTTGAATAGATGCGGCAAGAGTTGCAGGTTAAGATGGACAAACTATCTTAGGCCGGATATAAAGAGAGGGAAGTTTTCTCAAGAAGAAGAACAAACAATTCTGAATCTCCATTCCATTCTCGGCAACAAATGGTCAGCAATTGCAGGCCACCTACCCGGTCGGACGGACAATGAAATCAAAAATTTCTGGAATACCCATTTGAAGAAAAAGCTGATTCAGATGGGTTTTGATCCGATGACTCACCGGCCCCGGACTGATATCTTCTCTAGCTTGCCTCATCTTCTAGCTCTTGTCAATTTGAAAGAGCTTTTAGACCATGGAAGCAGTCACCAGTCCTGCTGGGATGAACAAGCTTTGAGATTACAAGCAGAAGCTTCTCAAATGGCTAGGCTTCAATATCTACAATGTCTCCTCCAACCTAATAACAATTCCTTTGGAGCTGCTACCCCAAACAACCTAAATGACTTCATTGACATGGAGACATTTAATCTTTTGAATTCACTCGGTTCATCTCAGCTGGATATTCAAGACCCTACTGCACAATACCCTGTTGGTGATTTTCAACCAGTAGTCCAAGATAATTCAGTCCCTTTCTCTCATTTGCCTGACTTGCAAACATACCCAACACCACCAAACAAGGACATGGTTAATGATCAAGCTCCAGATCAATTTACTGCTTTGAGCCAAGGTGAAAACTCTCCAAATAATCCATGGAATATTCCTTCGTCTTCAAATACTACTCTATCTCCTACTTCTGTGGCTCCTCCCATGACAGTGACAGAGACTTCAGTAAGCAACAACTTGGGTGATGCTTGCAGCACTTCAAGCTATGCAGGAGTGGCTACTTCAGCTTGGTCTGACCTTCTTTTTGAGGACCCCTTTTTTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

317

Amino Acids

35.27

Weight (kDa)

5.82

Isoelectric Point (pI)

50.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	2 - 36	3.1e-08	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	2 - 52	1.3e-07	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	42 - 87	2.8e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	45 - 91	2.1e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10280 AT5G65230
fragaria_vesca	FvH4_1g20680
malus_domestica	MD01G1031700.v1.1 MD15G1323500.v1.1
prunus_persica	Prupe.6G188300_v2.0.a1
pyrus_communis	pycom01g05920 pycom15g28470
rosa_chinensis	RchiOBHm_Chr2g0113131
rosa_laevigata	RLG00000018046 RLG00000018792
rosa_multiflora	Rmu_sc0005949.1_g000025
rosa_roxburghii	Rroxscaffold_2G00129590 Rroxscaffold_2G00129720
rosa_rugosa	Rorug02G0185700
rosa_samantha	Rh2AG240000 Rh2BG253900 Rh2CG244000 Rh2DG247900
rosa_wichuraiana	Rw2G018780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	75
AciI	CCGC	1 cut(s)	72
AclWI	GGATC	1 cut(s)	284
AcoI	YGGCCR	1 cut(s)	22
AcsI	RAATTY	2 cut(s)	241, 556
AcuI	CTGAAG	2 cut(s)	831, 891
AgsI	TTSAA	9 cut(s)	64, 262, 361, 455, 556, 587, 623, 792, 885
Alw26I	GTCTC	3 cut(s)	473, 533, 836
AlwI	GGATC	1 cut(s)	284
AoxI	GGCC	4 cut(s)	22, 110, 205, 305
ApeKI	GCWGC	2 cut(s)	500, 876
ApoI	RAATTY	2 cut(s)	241, 556
ArsI	GACNNNNNNTTYG	2 cut(s)	911, 943
AspS9I	GGNCC	2 cut(s)	306, 934
AsuC2I	CCSGG	2 cut(s)	216, 310
AsuHPI	GGTGA	5 cut(s)	293, 380, 626, 761, 878
AvaII	GGWCC	1 cut(s)	934
BalI	TGGCCA	1 cut(s)	24
BanII	GRGCYC	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	780
BbvI	GCAGC	2 cut(s)	487, 888
BccI	CCATC	2 cut(s)	87, 274
BclI	TGATCA	1 cut(s)	712
BcnI	CCSGG	2 cut(s)	216, 310
BcoDI	GTCTC	3 cut(s)	473, 533, 836
BfaI	CTAG	3 cut(s)	327, 344, 447
BfuAI	ACCTGC	1 cut(s)	75
BisI	GCNGC	3 cut(s)	73, 501, 877
BlsI	GCNGC	3 cut(s)	74, 502, 878
Bme1390I	CCNGG	2 cut(s)	216, 310
Bme18I	GGWCC	1 cut(s)	934
BmgT120I	GGNCC	2 cut(s)	306, 934
BmiI	GGNNCC	3 cut(s)	308, 822, 936
BmrFI	CCNGG	2 cut(s)	216, 310
BmsI	GCATC	2 cut(s)	59, 859
BpiI	GAAGAC	1 cut(s)	780
BpmI	CTGGAG	2 cut(s)	55, 705
BpuEI	CTTGAG	1 cut(s)	123
BpuMI	CCSGG	2 cut(s)	216, 310
BsaJI	CCNNGG	5 cut(s)	25, 308, 376, 745, 770
BsaXI	ACNNNNNCTCC	4 cut(s)	453, 483, 790, 820
Bse118I	RCCGGY	1 cut(s)	303
Bse1I	ACTGG	2 cut(s)	391, 626
BseDI	CCNNGG	5 cut(s)	25, 308, 376, 745, 770
BseGI	GGATG	1 cut(s)	409
BseMII	CTCAG	1 cut(s)	587
BseNI	ACTGG	2 cut(s)	391, 626
BseRI	GAGGAG	2 cut(s)	461, 813
BseXI	GCAGC	2 cut(s)	487, 888
BseYI	CCCAGC	1 cut(s)	399
BsgI	GTGCAG	1 cut(s)	582
Bsh1285I	CGRYCG	1 cut(s)	220
BshFI	GGCC	4 cut(s)	24, 112, 207, 307
BsiEI	CGRYCG	1 cut(s)	220
BsiSI	CCGG	4 cut(s)	113, 216, 304, 310
BslFI	GGGAC	1 cut(s)	632
BsmAI	GTCTC	3 cut(s)	473, 533, 836
BsmFI	GGGAC	1 cut(s)	632
BsnI	GGCC	4 cut(s)	24, 112, 207, 307
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp143I	GATC	3 cut(s)	289, 712, 724
Bsp19I	CCATGG	3 cut(s)	25, 376, 770
BspACI	CCGC	1 cut(s)	72
BspANI	GGCC	4 cut(s)	24, 112, 207, 307
BspCNI	CTCAG	1 cut(s)	586
BspLI	GGNNCC	3 cut(s)	308, 822, 936
BspMI	ACCTGC	1 cut(s)	75
BspPI	GGATC	1 cut(s)	284
BsrFI	RCCGGY	1 cut(s)	303
BsrI	ACTGG	2 cut(s)	391, 626
BssAI	RCCGGY	1 cut(s)	303
BssECI	CCNNGG	5 cut(s)	25, 308, 376, 745, 770
BssMI	GATC	3 cut(s)	289, 712, 724
BssT1I	CCWWGG	4 cut(s)	25, 376, 745, 770
Bst4CI	ACNGT	1 cut(s)	835
BstAPI	GCANNNNNTGC	1 cut(s)	81
BstC8I	GCNNGC	3 cut(s)	205, 332, 874
BstDEI	CTNAG	2 cut(s)	107, 573
BstDSI	CCRYGG	3 cut(s)	25, 376, 770
BstF5I	GGATG	1 cut(s)	409
BstKTI	GATC	3 cut(s)	292, 715, 727
BstMAI	GTCTC	3 cut(s)	473, 533, 836
BstMBI	GATC	3 cut(s)	289, 712, 724
BstMCI	CGRYCG	1 cut(s)	220
BstMWI	GCNNNNNNNGC	6 cut(s)	30, 81, 670, 885, 899, 908
BstSCI	CCNGG	2 cut(s)	214, 308
BstV1I	GCAGC	2 cut(s)	487, 888
BstV2I	GAAGAC	1 cut(s)	780
BsuRI	GGCC	4 cut(s)	24, 112, 207, 307
BtgI	CCRYGG	3 cut(s)	25, 376, 770
BtsCI	GGATG	1 cut(s)	409
BtsIMutI	CAGTG	1 cut(s)	840
BveI	ACCTGC	1 cut(s)	75
Cac8I	GCNNGC	3 cut(s)	205, 332, 874
Cfr10I	RCCGGY	1 cut(s)	303
Cfr13I	GGNCC	2 cut(s)	306, 934
CviAII	CATG	6 cut(s)	26, 377, 535, 703, 771, 829
DdeI	CTNAG	2 cut(s)	107, 573
DpnI	GATC	3 cut(s)	291, 714, 726
DpnII	GATC	3 cut(s)	289, 712, 724
EaeI	YGGCCR	1 cut(s)	22
Eco130I	CCWWGG	4 cut(s)	25, 376, 745, 770
Eco24I	GRGCYC	1 cut(s)	43
Eco32I	GATATC	1 cut(s)	319
Eco47I	GGWCC	1 cut(s)	934
Eco57I	CTGAAG	2 cut(s)	831, 891
EcoO109I	RGGNCCY	1 cut(s)	934
EcoRI	GAATTC	1 cut(s)	556
EcoRV	GATATC	1 cut(s)	319
EcoT14I	CCWWGG	4 cut(s)	25, 376, 745, 770
EcoT38I	GRGCYC	1 cut(s)	43
ErhI	CCWWGG	4 cut(s)	25, 376, 745, 770
FaeI	CATG	6 cut(s)	29, 380, 538, 706, 774, 832
FaiI	YATR	9 cut(s)	27, 119, 378, 536, 679, 704, 772, 830, 891
FaqI	GGGAC	1 cut(s)	632
FatI	CATG	6 cut(s)	25, 376, 534, 702, 770, 828
FbaI	TGATCA	1 cut(s)	712
Fnu4HI	GCNGC	3 cut(s)	73, 501, 877
FokI	GGATG	1 cut(s)	416
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	3 cut(s)	73, 501, 877
FspBI	CTAG	3 cut(s)	327, 344, 447
GluI	GCNGC	3 cut(s)	73, 501, 877
GsaI	CCCAGC	1 cut(s)	403
GsuI	CTGGAG	2 cut(s)	55, 705
HaeIII	GGCC	4 cut(s)	24, 112, 207, 307
HapII	CCGG	4 cut(s)	113, 216, 304, 310
Hin1II	CATG	6 cut(s)	29, 380, 538, 706, 774, 832
HindIII	AAGCTT	2 cut(s)	411, 432
HinfI	GANTC	3 cut(s)	163, 274, 298
HpaII	CCGG	4 cut(s)	113, 216, 304, 310
HphI	GGTGA	5 cut(s)	293, 380, 626, 761, 878
Hpy188I	TCNGA	6 cut(s)	15, 162, 222, 279, 294, 919
Hpy188III	TCNNGA	4 cut(s)	140, 247, 587, 722
HpyAV	CCTTC	3 cut(s)	53, 792, 932
HpyCH4III	ACNGT	1 cut(s)	835
HpyCH4V	TGCA	7 cut(s)	56, 84, 203, 599, 673, 876, 893
HpyF10VI	GCNNNNNNNGC	6 cut(s)	30, 81, 670, 885, 899, 908
HpyF3I	CTNAG	2 cut(s)	107, 573
Hsp92II	CATG	6 cut(s)	29, 380, 538, 706, 774, 832
Ksp22I	TGATCA	1 cut(s)	712
Kzo9I	GATC	3 cut(s)	289, 712, 724
LmnI	GCTCC	3 cut(s)	497, 724, 826
Lsp1109I	GCAGC	2 cut(s)	487, 888
LweI	GCATC	2 cut(s)	59, 859
MaeI	CTAG	3 cut(s)	327, 344, 447
MaeIII	GTNAC	2 cut(s)	386, 835
MalI	GATC	3 cut(s)	291, 714, 726
MboI	GATC	3 cut(s)	289, 712, 724
MboII	GAAGA	6 cut(s)	155, 158, 274, 313, 332, 780
MfeI	CAATTG	1 cut(s)	198
MhlI	GDGCHC	1 cut(s)	43
MlsI	TGGCCA	1 cut(s)	24
MluCI	AATT	8 cut(s)	156, 198, 241, 355, 487, 556, 640, 728
MluNI	TGGCCA	1 cut(s)	24
MlyI	GAGTC	1 cut(s)	292
MmeI	TCCRAC	2 cut(s)	200, 499
MnlI	CCTC	5 cut(s)	119, 345, 482, 834, 925
Mox20I	TGGCCA	1 cut(s)	24
MscI	TGGCCA	1 cut(s)	24
MseI	TTAA	3 cut(s)	89, 546, 708
MslI	CAYNNNNRTG	2 cut(s)	533, 833
Msp20I	TGGCCA	1 cut(s)	24
MspA1I	CMGCKG	1 cut(s)	577
MspI	CCGG	4 cut(s)	113, 216, 304, 310
MspR9I	CCNGG	2 cut(s)	216, 310
MunI	CAATTG	1 cut(s)	198
MwoI	GCNNNNNNNGC	6 cut(s)	30, 81, 670, 885, 899, 908
NciI	CCSGG	2 cut(s)	216, 310
NcoI	CCATGG	3 cut(s)	25, 376, 770
NdeII	GATC	3 cut(s)	289, 712, 724
NlaIII	CATG	6 cut(s)	29, 380, 538, 706, 774, 832
NlaIV	GGNNCC	3 cut(s)	308, 822, 936
NmeAIII	GCCGAG	1 cut(s)	159
NmuCI	GTSAC	2 cut(s)	386, 835
PfeI	GAWTC	2 cut(s)	163, 274
PkrI	GCNGC	3 cut(s)	74, 502, 878
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
PpuMI	RGGWCCY	1 cut(s)	934
Psp5II	RGGWCCY	1 cut(s)	934
PspFI	CCCAGC	1 cut(s)	399
PspN4I	GGNNCC	3 cut(s)	308, 822, 936
PspPI	GGNCC	2 cut(s)	306, 934
PspPPI	RGGWCCY	1 cut(s)	934
PvuII	CAGCTG	1 cut(s)	577
RseI	CAYNNNNRTG	2 cut(s)	533, 833
SaqAI	TTAA	3 cut(s)	89, 546, 708
SatI	GCNGC	3 cut(s)	73, 501, 877
Sau3AI	GATC	3 cut(s)	289, 712, 724
Sau96I	GGNCC	2 cut(s)	306, 934
SchI	GAGTC	1 cut(s)	292
ScrFI	CCNGG	2 cut(s)	216, 310
SduI	GDGCHC	1 cut(s)	43
SfaNI	GCATC	2 cut(s)	59, 859
SinI	GGWCC	1 cut(s)	934
SmiMI	CAYNNNNRTG	2 cut(s)	533, 833
SmlI	CTYRAG	1 cut(s)	138
SmoI	CTYRAG	1 cut(s)	138
Sse9I	AATT	8 cut(s)	156, 198, 241, 355, 487, 556, 640, 728
SsiI	CCGC	1 cut(s)	72
SspI	AATATT	1 cut(s)	778
SspMI	CTAG	3 cut(s)	327, 344, 447
StyD4I	CCNGG	2 cut(s)	214, 308
StyI	CCWWGG	4 cut(s)	25, 376, 745, 770
TaaI	ACNGT	1 cut(s)	835
TasI	AATT	8 cut(s)	156, 198, 241, 355, 487, 556, 640, 728
TauI	GCSGC	1 cut(s)	75
TfiI	GAWTC	2 cut(s)	163, 274
Tru1I	TTAA	3 cut(s)	89, 546, 708
Tru9I	TTAA	3 cut(s)	89, 546, 708
TscAI	CASTG	1 cut(s)	840
TseFI	GTSAC	2 cut(s)	386, 835
TseI	GCWGC	2 cut(s)	500, 876
Tsp45I	GTSAC	2 cut(s)	386, 835
TspDTI	ATGAA	5 cut(s)	17, 246, 420, 517, 558
TspGWI	ACGGA	1 cut(s)	239
TspRI	CASTG	1 cut(s)	840
VpaK11BI	GGWCC	1 cut(s)	934
XapI	RAATTY	2 cut(s)	241, 556
XcmI	CCANNNNNNNNNTGG	1 cut(s)	768
XspI	CTAG	3 cut(s)	327, 344, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.