Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010772

Physical Location & Seq

Genomic Coordinates Forward (+)

65531971 .. 65533409

Gene Structure 1439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00129590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGGAAGGTCTCCTTGTTGTGATGATAGTGGCCTCAAGAAAGGTCCCTGGACTCCTGAAGAAGATCAGAAGCTCATGCATTACATACAGAAACATGGCCATGGAAGCTGGAGAGCCCTTCCCAAACTTGCAGGGTTGAACAGATGTGGCAAGAGTTGCAGGTTAAGATGGACAAACTACCTTAGGCCAGATATAAAGAGAGGCAAATTTTCTCAAGAAGAAGAGCAAACAATTCTGAACCTTCATTCCATCCTTGGCAACAAATGGTCAGCAATTGCAAGCCACCTACCGGGTAGGACGGACAACGAAATCAAAAATTTCTGGAACACCCATTTGAAGAAAAAGCTGATTCAGATGGGTTTTGATCCGATGACCCACCGGCCTCGAACTGACATCTTCTCCAGCTTGCCACACCTTCTAGCTCTTGTCAATTTGAAAGATCTTATTGACCAAGGCAGCAGCCAGACATCTTGGGATGAACAAGCCTTGAGACTACAAGCAGAAGCTGCTCAAATGGCTAAAATTCAATACCTACAATACCTCCTCCAACCTCAAGCTTCTACCTCAAACAACCTAAGCGATTTCACTGACATGGAGACAATTGGTCTTTTGAATTCACTCTGTTCATCAATCAAAGATGTTAATCCAGTGTTTGGTTCATCTCAGTTGGAAACCTCAGCACAATACCTTGGATCATCTTCGGTGCAGGATTCAATCCCTTTCTCCCCTTTGCATGATTTGCAAATGGTACCATCCTCTGCTTATCAAAAGGACGTGATCATTAATCAAGCTCCAGATCAGTTTACAGTGTTGAGCCAAGTGGACAACTCTCCCAACAATAATTCATGGAATATTCCTTCCTCTTCAAATACTAGTACTCCCTCTCCTCCTTCTGTGGCGGTTCCTCCTGTGACGGAGACTTCAACAAGCAATAACAATATGGGTGATGCTTGCAGCACTACTACTTCAAGCTATGGAGGAGTGGCTACTATTTCTGCTTGGTCTGACCTACTTCTGGAGGACTGCCCGTTTTTCAATGAGATTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

349

Amino Acids

38.63

Weight (kDa)

5.84

Isoelectric Point (pI)

53.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	2e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 77	4.6e-14	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	1.3e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 116	2.9e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10280 AT5G65230
fragaria_vesca	FvH4_1g20680
malus_domestica	MD01G1031700.v1.1 MD15G1323500.v1.1
prunus_persica	Prupe.6G188300_v2.0.a1
pyrus_communis	pycom01g05920 pycom15g28470
rosa_chinensis	RchiOBHm_Chr2g0113131
rosa_laevigata	RLG00000018046 RLG00000018792
rosa_multiflora	Rmu_sc0005949.1_g000025
rosa_roxburghii	Rroxscaffold_2G00129590 Rroxscaffold_2G00129720
rosa_rugosa	Rorug02G0185700
rosa_samantha	Rh2AG240000 Rh2BG253900 Rh2CG244000 Rh2DG247900
rosa_wichuraiana	Rw2G018780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	150
Acc65I	GGTACC	1 cut(s)	748
AccB1I	GGYRCC	1 cut(s)	748
AccB7I	CCANNNNNTGG	1 cut(s)	653
AciI	CCGC	1 cut(s)	899
AclWI	GGATC	2 cut(s)	359, 700
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	4 cut(s)	206, 316, 522, 613
AcuI	CTGAAG	1 cut(s)	78
AfaI	GTAC	2 cut(s)	750, 877
AfiI	CCNNNNNNNGG	3 cut(s)	289, 653, 1015
AhdI	GACNNNNNGTC	1 cut(s)	603
AhlI	ACTAGT	1 cut(s)	872
AjiI	CACGTC	1 cut(s)	775
AjnI	CCWGG	1 cut(s)	47
AloI	GAACNNNNNNTCC	2 cut(s)	230, 262
AluBI	AGCT	9 cut(s)	73, 108, 346, 405, 422, 506, 557, 791, 972
AluI	AGCT	9 cut(s)	73, 108, 346, 405, 422, 506, 557, 791, 972
Alw26I	GTCTC	4 cut(s)	15, 484, 590, 911
AlwI	GGATC	2 cut(s)	359, 700
AlwNI	CAGNNNCTG	1 cut(s)	506
AoxI	GGCC	4 cut(s)	31, 97, 185, 380
ApeKI	GCWGC	4 cut(s)	456, 459, 506, 954
ApoI	RAATTY	4 cut(s)	206, 316, 522, 613
AseI	ATTAAT	1 cut(s)	783
Asp718I	GGTACC	1 cut(s)	748
AspS9I	GGNCC	1 cut(s)	44
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	956
AvaII	GGWCC	1 cut(s)	44
AxyI	CCTNAGG	1 cut(s)	182
BalI	TGGCCA	1 cut(s)	99
BanI	GGYRCC	1 cut(s)	748
BanII	GRGCYC	1 cut(s)	118
BbvCI	CCTCAGC	1 cut(s)	676
BbvI	GCAGC	4 cut(s)	468, 471, 493, 966
BccI	CCATC	4 cut(s)	162, 257, 349, 760
BciT130I	CCWGG	1 cut(s)	49
BclI	TGATCA	1 cut(s)	777
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	4 cut(s)	15, 484, 590, 911
BcuI	ACTAGT	1 cut(s)	872
BfaI	CTAG	2 cut(s)	419, 873
BfuAI	ACCTGC	1 cut(s)	150
BglII	AGATCT	1 cut(s)	439
BisI	GCNGC	4 cut(s)	457, 460, 507, 955
BlsI	GCNGC	4 cut(s)	458, 461, 508, 956
BmcAI	AGTACT	1 cut(s)	877
Bme1390I	CCNGG	2 cut(s)	49, 291
Bme18I	GGWCC	1 cut(s)	44
BmeRI	GACNNNNNGTC	1 cut(s)	603
BmgBI	CACGTC	1 cut(s)	775
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	3 cut(s)	46, 750, 903
BmrFI	CCNGG	2 cut(s)	49, 291
BmsI	GCATC	1 cut(s)	937
BpmI	CTGGAG	4 cut(s)	130, 385, 777, 1037
Bpu10I	CCTNAGC	2 cut(s)	575, 676
BpuEI	CTTGAG	4 cut(s)	20, 198, 508, 537
BpuMI	CCSGG	1 cut(s)	291
BsaBI	GATNNNNATC	1 cut(s)	642
BsaI	GGTCTC	1 cut(s)	15
BsaJI	CCNNGG	5 cut(s)	47, 100, 253, 451, 688
BsaXI	ACNNNNNCTCC	8 cut(s)	383, 413, 525, 555, 862, 868, 892, 898
Bsc4I	CCNNNNNNNGG	3 cut(s)	289, 653, 1015
Bse118I	RCCGGY	1 cut(s)	378
Bse1I	ACTGG	1 cut(s)	647
Bse21I	CCTNAGG	1 cut(s)	182
Bse8I	GATNNNNATC	1 cut(s)	642
BseBI	CCWGG	1 cut(s)	49
BseDI	CCNNGG	5 cut(s)	47, 100, 253, 451, 688
BseGI	GGATG	3 cut(s)	249, 481, 752
BseJI	GATNNNNATC	1 cut(s)	642
BseLI	CCNNNNNNNGG	3 cut(s)	289, 653, 1015
BseMII	CTCAG	2 cut(s)	677, 690
BseNI	ACTGG	1 cut(s)	647
BseRI	GAGGAG	3 cut(s)	533, 876, 993
BseXI	GCAGC	4 cut(s)	468, 471, 493, 966
BsgI	GTGCAG	1 cut(s)	725
BshFI	GGCC	4 cut(s)	33, 99, 187, 382
BshNI	GGYRCC	1 cut(s)	748
BsiSI	CCGG	2 cut(s)	290, 379
BslFI	GGGAC	1 cut(s)	30
BslI	CCNNNNNNNGG	3 cut(s)	289, 653, 1015
BsmAI	GTCTC	4 cut(s)	15, 484, 590, 911
BsmFI	GGGAC	1 cut(s)	30
BsnI	GGCC	4 cut(s)	33, 99, 187, 382
Bso31I	GGTCTC	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp143I	GATC	6 cut(s)	64, 364, 439, 692, 777, 796
Bsp19I	CCATGG	1 cut(s)	100
BspACI	CCGC	1 cut(s)	899
BspANI	GGCC	4 cut(s)	33, 99, 187, 382
BspCNI	CTCAG	2 cut(s)	676, 689
BspLI	GGNNCC	3 cut(s)	46, 750, 903
BspMI	ACCTGC	1 cut(s)	150
BspPI	GGATC	2 cut(s)	359, 700
BspQI	GCTCTTC	1 cut(s)	216
BspT107I	GGYRCC	1 cut(s)	748
BspTNI	GGTCTC	1 cut(s)	15
BsrFI	RCCGGY	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	647
BssAI	RCCGGY	1 cut(s)	378
BssECI	CCNNGG	5 cut(s)	47, 100, 253, 451, 688
BssMI	GATC	6 cut(s)	64, 364, 439, 692, 777, 796
BssT1I	CCWWGG	4 cut(s)	100, 253, 451, 688
Bst2UI	CCWGG	1 cut(s)	49
Bst4CI	ACNGT	1 cut(s)	808
Bst6I	CTCTTC	2 cut(s)	216, 868
BstAPI	GCANNNNNTGC	3 cut(s)	156, 506, 739
BstC8I	GCNNGC	3 cut(s)	280, 407, 952
BstDEI	CTNAG	5 cut(s)	182, 575, 663, 676, 1047
BstDSI	CCRYGG	1 cut(s)	100
BstF5I	GGATG	3 cut(s)	249, 481, 752
BstKTI	GATC	6 cut(s)	67, 367, 442, 695, 780, 799
BstMAI	GTCTC	4 cut(s)	15, 484, 590, 911
BstMBI	GATC	6 cut(s)	64, 364, 439, 692, 777, 796
BstMWI	GCNNNNNNNGC	5 cut(s)	105, 156, 506, 515, 739
BstNI	CCWGG	1 cut(s)	49
BstSCI	CCNGG	2 cut(s)	47, 289
BstV1I	GCAGC	4 cut(s)	468, 471, 493, 966
BstX2I	RGATCY	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	439
Bsu36I	CCTNAGG	1 cut(s)	182
BsuRI	GGCC	4 cut(s)	33, 99, 187, 382
BtgI	CCRYGG	1 cut(s)	100
BtrI	CACGTC	1 cut(s)	775
BtsCI	GGATG	3 cut(s)	249, 481, 752
BtsIMutI	CAGTG	3 cut(s)	585, 654, 813
BveI	ACCTGC	1 cut(s)	150
Cac8I	GCNNGC	3 cut(s)	280, 407, 952
CaiI	CAGNNNCTG	1 cut(s)	506
Cfr10I	RCCGGY	1 cut(s)	378
Cfr13I	GGNCC	1 cut(s)	44
Csp6I	GTAC	2 cut(s)	749, 876
CviAII	CATG	6 cut(s)	76, 95, 101, 592, 734, 846
CviQI	GTAC	2 cut(s)	749, 876
DdeI	CTNAG	5 cut(s)	182, 575, 663, 676, 1047
DpnI	GATC	6 cut(s)	66, 366, 441, 694, 779, 798
DpnII	GATC	6 cut(s)	64, 364, 439, 692, 777, 796
DriI	GACNNNNNGTC	1 cut(s)	603
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	2 cut(s)	216, 868
Eam1105I	GACNNNNNGTC	1 cut(s)	603
EarI	CTCTTC	2 cut(s)	216, 868
Eco130I	CCWWGG	4 cut(s)	100, 253, 451, 688
Eco24I	GRGCYC	1 cut(s)	118
Eco31I	GGTCTC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	78
Eco81I	CCTNAGG	1 cut(s)	182
EcoO109I	RGGNCCY	1 cut(s)	44
EcoRI	GAATTC	1 cut(s)	613
EcoRII	CCWGG	1 cut(s)	47
EcoT14I	CCWWGG	4 cut(s)	100, 253, 451, 688
EcoT22I	ATGCAT	1 cut(s)	81
EcoT38I	GRGCYC	1 cut(s)	118
ErhI	CCWWGG	4 cut(s)	100, 253, 451, 688
FaeI	CATG	6 cut(s)	79, 98, 104, 595, 737, 849
FalI	AAGNNNNNCTT	1 cut(s)	30
FaqI	GGGAC	1 cut(s)	30
FatI	CATG	6 cut(s)	75, 94, 100, 591, 733, 845
FbaI	TGATCA	1 cut(s)	777
Fnu4HI	GCNGC	4 cut(s)	457, 460, 507, 955
FokI	GGATG	3 cut(s)	236, 488, 739
FriOI	GRGCYC	1 cut(s)	118
Fsp4HI	GCNGC	4 cut(s)	457, 460, 507, 955
FspBI	CTAG	2 cut(s)	419, 873
GluI	GCNGC	4 cut(s)	457, 460, 507, 955
GsuI	CTGGAG	4 cut(s)	130, 385, 777, 1037
HaeIII	GGCC	4 cut(s)	33, 99, 187, 382
HapII	CCGG	2 cut(s)	290, 379
Hin1II	CATG	6 cut(s)	79, 98, 104, 595, 737, 849
HindIII	AAGCTT	1 cut(s)	555
HinfI	GANTC	3 cut(s)	52, 349, 710
HpaII	CCGG	2 cut(s)	290, 379
HphI	GGTGA	1 cut(s)	956
Hpy166II	GTNNAC	2 cut(s)	804, 823
Hpy188I	TCNGA	5 cut(s)	69, 237, 354, 369, 1006
Hpy188III	TCNNGA	6 cut(s)	37, 56, 215, 322, 794, 1016
Hpy8I	GTNNAC	2 cut(s)	804, 823
HpyAV	CCTTC	5 cut(s)	128, 251, 425, 867, 900
HpyCH4III	ACNGT	1 cut(s)	808
HpyCH4IV	ACGT	1 cut(s)	774
HpyCH4V	TGCA	8 cut(s)	79, 131, 159, 278, 706, 733, 742, 954
HpyF10VI	GCNNNNNNNGC	5 cut(s)	105, 156, 506, 515, 739
HpyF3I	CTNAG	5 cut(s)	182, 575, 663, 676, 1047
HpySE526I	ACGT	1 cut(s)	774
Hsp92II	CATG	6 cut(s)	79, 98, 104, 595, 737, 849
KpnI	GGTACC	1 cut(s)	752
Ksp22I	TGATCA	1 cut(s)	777
Kzo9I	GATC	6 cut(s)	64, 364, 439, 692, 777, 796
LguI	GCTCTTC	1 cut(s)	216
LmnI	GCTCC	1 cut(s)	796
Lsp1109I	GCAGC	4 cut(s)	468, 471, 493, 966
LweI	GCATC	1 cut(s)	937
MaeI	CTAG	2 cut(s)	419, 873
MaeII	ACGT	1 cut(s)	774
MaeIII	GTNAC	1 cut(s)	910
MalI	GATC	6 cut(s)	66, 366, 441, 694, 779, 798
MboI	GATC	6 cut(s)	64, 364, 439, 692, 777, 796
MboII	GAAGA	8 cut(s)	71, 74, 230, 233, 349, 388, 690, 855
MfeI	CAATTG	2 cut(s)	273, 600
MflI	RGATCY	1 cut(s)	439
MhlI	GDGCHC	1 cut(s)	118
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	9 cut(s)	206, 231, 273, 316, 430, 522, 600, 613, 841
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	1 cut(s)	46
MmeI	TCCRAC	2 cut(s)	571, 648
Mox20I	TGGCCA	1 cut(s)	99
Mph1103I	ATGCAT	1 cut(s)	81
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	3 cut(s)	164, 642, 783
MslI	CAYNNNNRTG	2 cut(s)	99, 590
Msp20I	TGGCCA	1 cut(s)	99
MspI	CCGG	2 cut(s)	290, 379
MspR9I	CCNGG	2 cut(s)	49, 291
MunI	CAATTG	2 cut(s)	273, 600
MvaI	CCWGG	1 cut(s)	49
MwoI	GCNNNNNNNGC	5 cut(s)	105, 156, 506, 515, 739
NciI	CCSGG	1 cut(s)	291
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	6 cut(s)	64, 364, 439, 692, 777, 796
NlaIII	CATG	6 cut(s)	79, 98, 104, 595, 737, 849
NlaIV	GGNNCC	3 cut(s)	46, 750, 903
NmuCI	GTSAC	1 cut(s)	910
NsiI	ATGCAT	1 cut(s)	81
PciSI	GCTCTTC	1 cut(s)	216
PfeI	GAWTC	2 cut(s)	349, 710
PflMI	CCANNNNNTGG	1 cut(s)	653
PkrI	GCNGC	4 cut(s)	458, 461, 508, 956
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PpuMI	RGGWCCY	1 cut(s)	44
PshBI	ATTAAT	1 cut(s)	783
Psp5II	RGGWCCY	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	47
PspGI	CCWGG	1 cut(s)	47
PspN4I	GGNNCC	3 cut(s)	46, 750, 903
PspPI	GGNCC	1 cut(s)	44
PspPPI	RGGWCCY	1 cut(s)	44
PstNI	CAGNNNCTG	1 cut(s)	506
PsuI	RGATCY	1 cut(s)	439
RsaI	GTAC	2 cut(s)	750, 877
RsaNI	GTAC	2 cut(s)	749, 876
RseI	CAYNNNNRTG	2 cut(s)	99, 590
SapI	GCTCTTC	1 cut(s)	216
SaqAI	TTAA	3 cut(s)	164, 642, 783
SatI	GCNGC	4 cut(s)	457, 460, 507, 955
Sau3AI	GATC	6 cut(s)	64, 364, 439, 692, 777, 796
Sau96I	GGNCC	1 cut(s)	44
ScaI	AGTACT	1 cut(s)	877
SchI	GAGTC	1 cut(s)	46
ScrFI	CCNGG	2 cut(s)	49, 291
SduI	GDGCHC	1 cut(s)	118
SfaNI	GCATC	1 cut(s)	937
SinI	GGWCC	1 cut(s)	44
SmiMI	CAYNNNNRTG	2 cut(s)	99, 590
SmlI	CTYRAG	4 cut(s)	35, 213, 487, 552
SmoI	CTYRAG	4 cut(s)	35, 213, 487, 552
SpeI	ACTAGT	1 cut(s)	872
Sse9I	AATT	9 cut(s)	206, 231, 273, 316, 430, 522, 600, 613, 841
SsiI	CCGC	1 cut(s)	899
SspI	AATATT	1 cut(s)	853
SspMI	CTAG	2 cut(s)	419, 873
StyD4I	CCNGG	2 cut(s)	47, 289
StyI	CCWWGG	4 cut(s)	100, 253, 451, 688
TaaI	ACNGT	1 cut(s)	808
TaiI	ACGT	1 cut(s)	777
TaqI	TCGA	1 cut(s)	385
TasI	AATT	9 cut(s)	206, 231, 273, 316, 430, 522, 600, 613, 841
TatI	WGTACW	1 cut(s)	875
TfiI	GAWTC	2 cut(s)	349, 710
Tru1I	TTAA	3 cut(s)	164, 642, 783
Tru9I	TTAA	3 cut(s)	164, 642, 783
TscAI	CASTG	3 cut(s)	592, 654, 813
TseFI	GTSAC	1 cut(s)	910
TseI	GCWGC	4 cut(s)	456, 459, 506, 954
Tsp45I	GTSAC	1 cut(s)	910
TspDTI	ATGAA	5 cut(s)	233, 492, 615, 648, 834
TspGWI	ACGGA	2 cut(s)	314, 929
TspRI	CASTG	3 cut(s)	592, 654, 813
Van91I	CCANNNNNTGG	1 cut(s)	653
VpaK11BI	GGWCC	1 cut(s)	44
VspI	ATTAAT	1 cut(s)	783
XapI	RAATTY	4 cut(s)	206, 316, 522, 613
XspI	CTAG	2 cut(s)	419, 873
ZrmI	AGTACT	1 cut(s)	877
Zsp2I	ATGCAT	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.