Rh2DG247900
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0010772
Physical Location & Seq
Reverse (-)
25488044 .. 25489407
1364 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG247900.1

Sequence Viewer

Length: 1050 bp
ATGGGAAGGTCTCCTTGTTGTGATGATAGTGGCCTCAAGAAAGGTCCCTGGACTCCTGAAGAAGATCAGAAGCTAATGAATTACATACAGAAACATGGCCATGGAAGCTGGAGAGCCCTTCCCAAACTTGCAGGGTTGAACAGATGTGGCAAGAGTTGCAGGTTAAGATGGACAAACTACCTTAGGCCAGATATAAAGAGAGGCAAATTTTCTCAAGAAGAAGAGCAAACAATTCTGAACCTTCATTCCATCCTTGGCAACAAATGGTCAGCAATTGCAAGCCACCTACCGGGTAGGACGGACAACGAAATCAAAAATTTCTGGAACACCCATTTGAAGAAAAAGCTGATTCAGATGGGTTTTGATCCGATGACCCACCGGCCTCGAACTGACATCTTCTCCAGCTTGCCACACCTTCTAGCTCTTGTCAATTTGAAAGATCTTATTGACCAAGGCAGCAGCCAGACATCTTGGGATGAACAAGCCTTGAGACTACAAGCAGAAGCTGCTCAAATGGCTAAAATTCAATACCTACAATACCTCCTCCAACCTCAAGCTTCTACCTCAAACAACCTAAGCGATTTCACTGACATGGAGACAATTGGTCTTTTGAATTCACTCTGTTCATCAATCAAAGATGTTAATCCAGTGTTTGGCTCATCTCAGTTGGAAACCTCAGCACAATACCTCGGGTCAACTTCTGTGCAGGATTCAATCCCTTTTTGCCCTTTACCTGATTTGCAAATGGTACCCTCCTCTGCTTATCAAAAGGACATGATCATTAATCAAGCTCCAGATCAGTTTACAGTGTTGAGCCAATTGGACAACTCTCCCAACAATAATTCATGGAATATTCCTTCCTCTTCAAATACTAGTACTGCCTCTCCTCCTTCTGTGGCGGTTCCTCCAGTGACGGAGACTTCAACAAGCAATAATAATATGGGTGATGCTTGCAGCACTACTACTTCAAGCTATGGAGGAGTGGCTACTGTTTCTGCTTGGTCTGACCTACTTCTGGAGGACTACCCGTTTTTCAATGAGATTTCTTAG

Protein Analysis

349

Amino Acids

38.67

Weight (kDa)

5.65

Isoelectric Point (pI)

48.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 1.3e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 77 2e-14 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 1.3e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 116 2.9e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010772)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10280 AT5G65230
fragaria_vesca FvH4_1g20680
malus_domestica MD01G1031700.v1.1 MD15G1323500.v1.1
prunus_persica Prupe.6G188300_v2.0.a1
pyrus_communis pycom01g05920 pycom15g28470
rosa_chinensis RchiOBHm_Chr2g0113131
rosa_laevigata RLG00000018046 RLG00000018792
rosa_multiflora Rmu_sc0005949.1_g000025
rosa_roxburghii Rroxscaffold_2G00129590 Rroxscaffold_2G00129720
rosa_rugosa Rorug02G0185700
rosa_samantha Rh2AG240000 Rh2BG253900 Rh2CG244000 Rh2DG247900
rosa_wichuraiana Rw2G018780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 150
Acc65I GGTACC 1 cut(s) 748
AccB1I GGYRCC 1 cut(s) 748
AccB7I CCANNNNNTGG 1 cut(s) 653
AciI CCGC 1 cut(s) 899
AclWI GGATC 1 cut(s) 359
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 4 cut(s) 206, 316, 522, 613
AcuI CTGAAG 1 cut(s) 78
AfaI GTAC 2 cut(s) 750, 877
AfiI CCNNNNNNNGG 3 cut(s) 289, 653, 1015
AhdI GACNNNNNGTC 1 cut(s) 603
AhlI ACTAGT 1 cut(s) 872
AjnI CCWGG 1 cut(s) 47
AloI GAACNNNNNNTCC 2 cut(s) 230, 262
AluBI AGCT 9 cut(s) 73, 108, 346, 405, 422, 506, 557, 791, 972
AluI AGCT 9 cut(s) 73, 108, 346, 405, 422, 506, 557, 791, 972
Alw26I GTCTC 4 cut(s) 15, 484, 590, 911
AlwI GGATC 1 cut(s) 359
AlwNI CAGNNNCTG 1 cut(s) 506
Ama87I CYCGRG 1 cut(s) 689
AoxI GGCC 4 cut(s) 31, 97, 185, 380
ApeKI GCWGC 4 cut(s) 456, 459, 506, 954
ApoI RAATTY 4 cut(s) 206, 316, 522, 613
AseI ATTAAT 1 cut(s) 783
Asp718I GGTACC 1 cut(s) 748
AspS9I GGNCC 1 cut(s) 44
AsuC2I CCSGG 1 cut(s) 291
AsuHPI GGTGA 1 cut(s) 956
AvaI CYCGRG 1 cut(s) 689
AvaII GGWCC 1 cut(s) 44
AxyI CCTNAGG 1 cut(s) 182
BalI TGGCCA 1 cut(s) 99
BanI GGYRCC 1 cut(s) 748
BanII GRGCYC 1 cut(s) 118
BbvCI CCTCAGC 1 cut(s) 676
BbvI GCAGC 4 cut(s) 468, 471, 493, 966
BccI CCATC 3 cut(s) 162, 257, 349
BciT130I CCWGG 1 cut(s) 49
BclI TGATCA 1 cut(s) 777
BcnI CCSGG 1 cut(s) 291
BcoDI GTCTC 4 cut(s) 15, 484, 590, 911
BcuI ACTAGT 1 cut(s) 872
BfaI CTAG 2 cut(s) 419, 873
BfuAI ACCTGC 1 cut(s) 150
BglII AGATCT 1 cut(s) 439
BisI GCNGC 4 cut(s) 457, 460, 507, 955
BlsI GCNGC 4 cut(s) 458, 461, 508, 956
BmcAI AGTACT 1 cut(s) 877
Bme1390I CCNGG 2 cut(s) 49, 291
Bme18I GGWCC 1 cut(s) 44
BmeRI GACNNNNNGTC 1 cut(s) 603
BmeT110I CYCGRG 1 cut(s) 689
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 3 cut(s) 46, 750, 903
BmrFI CCNGG 2 cut(s) 49, 291
BmsI GCATC 1 cut(s) 937
BpmI CTGGAG 5 cut(s) 130, 385, 777, 891, 1037
Bpu10I CCTNAGC 2 cut(s) 575, 676
BpuEI CTTGAG 4 cut(s) 20, 198, 508, 537
BpuMI CCSGG 1 cut(s) 291
BsaBI GATNNNNATC 1 cut(s) 642
BsaI GGTCTC 1 cut(s) 15
BsaJI CCNNGG 5 cut(s) 47, 100, 253, 451, 688
BsaXI ACNNNNNCTCC 6 cut(s) 383, 413, 525, 555, 868, 898
Bsc4I CCNNNNNNNGG 3 cut(s) 289, 653, 1015
Bse118I RCCGGY 1 cut(s) 378
Bse1I ACTGG 2 cut(s) 647, 908
Bse21I CCTNAGG 1 cut(s) 182
Bse8I GATNNNNATC 1 cut(s) 642
BseBI CCWGG 1 cut(s) 49
BseDI CCNNGG 5 cut(s) 47, 100, 253, 451, 688
BseGI GGATG 2 cut(s) 249, 481
BseJI GATNNNNATC 1 cut(s) 642
BseLI CCNNNNNNNGG 3 cut(s) 289, 653, 1015
BseMII CTCAG 2 cut(s) 677, 690
BseNI ACTGG 2 cut(s) 647, 908
BseRI GAGGAG 4 cut(s) 533, 745, 876, 993
BseXI GCAGC 4 cut(s) 468, 471, 493, 966
BsgI GTGCAG 1 cut(s) 725
BshFI GGCC 4 cut(s) 33, 99, 187, 382
BshNI GGYRCC 1 cut(s) 748
BsiHKCI CYCGRG 1 cut(s) 689
BsiSI CCGG 2 cut(s) 290, 379
BslFI GGGAC 1 cut(s) 30
BslI CCNNNNNNNGG 3 cut(s) 289, 653, 1015
BsmAI GTCTC 4 cut(s) 15, 484, 590, 911
BsmFI GGGAC 1 cut(s) 30
BsnI GGCC 4 cut(s) 33, 99, 187, 382
Bso31I GGTCTC 1 cut(s) 15
BsoBI CYCGRG 1 cut(s) 689
Bsp1286I GDGCHC 1 cut(s) 118
Bsp143I GATC 5 cut(s) 64, 364, 439, 777, 796
Bsp19I CCATGG 1 cut(s) 100
BspACI CCGC 1 cut(s) 899
BspANI GGCC 4 cut(s) 33, 99, 187, 382
BspCNI CTCAG 2 cut(s) 676, 689
BspLI GGNNCC 3 cut(s) 46, 750, 903
BspMI ACCTGC 1 cut(s) 150
BspPI GGATC 1 cut(s) 359
BspQI GCTCTTC 1 cut(s) 216
BspT107I GGYRCC 1 cut(s) 748
BspTNI GGTCTC 1 cut(s) 15
BsrFI RCCGGY 1 cut(s) 378
BsrI ACTGG 2 cut(s) 647, 908
BssAI RCCGGY 1 cut(s) 378
BssECI CCNNGG 5 cut(s) 47, 100, 253, 451, 688
BssMI GATC 5 cut(s) 64, 364, 439, 777, 796
BssT1I CCWWGG 3 cut(s) 100, 253, 451
Bst2UI CCWGG 1 cut(s) 49
Bst4CI ACNGT 2 cut(s) 808, 991
Bst6I CTCTTC 2 cut(s) 216, 868
BstAPI GCANNNNNTGC 2 cut(s) 156, 506
BstC8I GCNNGC 3 cut(s) 280, 407, 952
BstDEI CTNAG 5 cut(s) 182, 575, 663, 676, 1047
BstDSI CCRYGG 1 cut(s) 100
BstF5I GGATG 2 cut(s) 249, 481
BstKTI GATC 5 cut(s) 67, 367, 442, 780, 799
BstMAI GTCTC 4 cut(s) 15, 484, 590, 911
BstMBI GATC 5 cut(s) 64, 364, 439, 777, 796
BstMWI GCNNNNNNNGC 4 cut(s) 105, 156, 506, 515
BstNI CCWGG 1 cut(s) 49
BstSCI CCNGG 2 cut(s) 47, 289
BstV1I GCAGC 4 cut(s) 468, 471, 493, 966
BstX2I RGATCY 1 cut(s) 439
BstYI RGATCY 1 cut(s) 439
Bsu36I CCTNAGG 1 cut(s) 182
BsuRI GGCC 4 cut(s) 33, 99, 187, 382
BtgI CCRYGG 1 cut(s) 100
BtsCI GGATG 2 cut(s) 249, 481
BtsIMutI CAGTG 4 cut(s) 585, 654, 813, 915
BveI ACCTGC 1 cut(s) 150
Cac8I GCNNGC 3 cut(s) 280, 407, 952
CaiI CAGNNNCTG 1 cut(s) 506
Cfr10I RCCGGY 1 cut(s) 378
Cfr13I GGNCC 1 cut(s) 44
Csp6I GTAC 2 cut(s) 749, 876
CviAII CATG 5 cut(s) 95, 101, 592, 775, 846
CviQI GTAC 2 cut(s) 749, 876
DdeI CTNAG 5 cut(s) 182, 575, 663, 676, 1047
DpnI GATC 5 cut(s) 66, 366, 441, 779, 798
DpnII GATC 5 cut(s) 64, 364, 439, 777, 796
DriI GACNNNNNGTC 1 cut(s) 603
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 2 cut(s) 216, 868
Eam1105I GACNNNNNGTC 1 cut(s) 603
EarI CTCTTC 2 cut(s) 216, 868
Eco130I CCWWGG 3 cut(s) 100, 253, 451
Eco24I GRGCYC 1 cut(s) 118
Eco31I GGTCTC 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 78
Eco81I CCTNAGG 1 cut(s) 182
Eco88I CYCGRG 1 cut(s) 689
EcoO109I RGGNCCY 1 cut(s) 44
EcoRI GAATTC 1 cut(s) 613
EcoRII CCWGG 1 cut(s) 47
EcoT14I CCWWGG 3 cut(s) 100, 253, 451
EcoT38I GRGCYC 1 cut(s) 118
ErhI CCWWGG 3 cut(s) 100, 253, 451
FaeI CATG 5 cut(s) 98, 104, 595, 778, 849
FaiI YATR 9 cut(s) 86, 96, 102, 194, 593, 776, 847, 941, 975
FalI AAGNNNNNCTT 1 cut(s) 30
FaqI GGGAC 1 cut(s) 30
FatI CATG 5 cut(s) 94, 100, 591, 774, 845
FbaI TGATCA 1 cut(s) 777
Fnu4HI GCNGC 4 cut(s) 457, 460, 507, 955
FokI GGATG 2 cut(s) 236, 488
FriOI GRGCYC 1 cut(s) 118
Fsp4HI GCNGC 4 cut(s) 457, 460, 507, 955
FspBI CTAG 2 cut(s) 419, 873
GluI GCNGC 4 cut(s) 457, 460, 507, 955
GsuI CTGGAG 5 cut(s) 130, 385, 777, 891, 1037
HaeIII GGCC 4 cut(s) 33, 99, 187, 382
HapII CCGG 2 cut(s) 290, 379
Hin1II CATG 5 cut(s) 98, 104, 595, 778, 849
HincII GTYRAC 1 cut(s) 696
HindII GTYRAC 1 cut(s) 696
HindIII AAGCTT 1 cut(s) 555
HinfI GANTC 3 cut(s) 52, 349, 710
HpaII CCGG 2 cut(s) 290, 379
HphI GGTGA 1 cut(s) 956
Hpy166II GTNNAC 2 cut(s) 696, 804
Hpy188I TCNGA 5 cut(s) 69, 237, 354, 369, 1006
Hpy188III TCNNGA 6 cut(s) 37, 56, 215, 322, 794, 1016
Hpy8I GTNNAC 2 cut(s) 696, 804
HpyAV CCTTC 5 cut(s) 128, 251, 425, 867, 900
HpyCH4III ACNGT 2 cut(s) 808, 991
HpyCH4V TGCA 6 cut(s) 131, 159, 278, 706, 742, 954
HpyF10VI GCNNNNNNNGC 4 cut(s) 105, 156, 506, 515
HpyF3I CTNAG 5 cut(s) 182, 575, 663, 676, 1047
Hsp92II CATG 5 cut(s) 98, 104, 595, 778, 849
KpnI GGTACC 1 cut(s) 752
Ksp22I TGATCA 1 cut(s) 777
Kzo9I GATC 5 cut(s) 64, 364, 439, 777, 796
LguI GCTCTTC 1 cut(s) 216
LmnI GCTCC 1 cut(s) 796
Lsp1109I GCAGC 4 cut(s) 468, 471, 493, 966
LweI GCATC 1 cut(s) 937
MaeI CTAG 2 cut(s) 419, 873
MaeIII GTNAC 1 cut(s) 910
MalI GATC 5 cut(s) 66, 366, 441, 779, 798
MboI GATC 5 cut(s) 64, 364, 439, 777, 796
MboII GAAGA 7 cut(s) 71, 74, 230, 233, 349, 388, 855
MfeI CAATTG 3 cut(s) 273, 600, 818
MflI RGATCY 1 cut(s) 439
MhlI GDGCHC 1 cut(s) 118
MlsI TGGCCA 1 cut(s) 99
MluNI TGGCCA 1 cut(s) 99
MlyI GAGTC 1 cut(s) 46
MmeI TCCRAC 2 cut(s) 571, 648
Mox20I TGGCCA 1 cut(s) 99
MscI TGGCCA 1 cut(s) 99
MseI TTAA 3 cut(s) 164, 642, 783
MslI CAYNNNNRTG 2 cut(s) 99, 590
Msp20I TGGCCA 1 cut(s) 99
MspI CCGG 2 cut(s) 290, 379
MspR9I CCNGG 2 cut(s) 49, 291
MunI CAATTG 3 cut(s) 273, 600, 818
MvaI CCWGG 1 cut(s) 49
MwoI GCNNNNNNNGC 4 cut(s) 105, 156, 506, 515
NciI CCSGG 1 cut(s) 291
NcoI CCATGG 1 cut(s) 100
NdeII GATC 5 cut(s) 64, 364, 439, 777, 796
NlaIII CATG 5 cut(s) 98, 104, 595, 778, 849
NlaIV GGNNCC 3 cut(s) 46, 750, 903
NmuCI GTSAC 1 cut(s) 910
PciSI GCTCTTC 1 cut(s) 216
PfeI GAWTC 2 cut(s) 349, 710
PflMI CCANNNNNTGG 1 cut(s) 653
PkrI GCNGC 4 cut(s) 458, 461, 508, 956
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
PpuMI RGGWCCY 1 cut(s) 44
PshBI ATTAAT 1 cut(s) 783
Psp5II RGGWCCY 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 47
PspGI CCWGG 1 cut(s) 47
PspN4I GGNNCC 3 cut(s) 46, 750, 903
PspPI GGNCC 1 cut(s) 44
PspPPI RGGWCCY 1 cut(s) 44
PstNI CAGNNNCTG 1 cut(s) 506
PsuI RGATCY 1 cut(s) 439
RsaI GTAC 2 cut(s) 750, 877
RsaNI GTAC 2 cut(s) 749, 876
RseI CAYNNNNRTG 2 cut(s) 99, 590
SapI GCTCTTC 1 cut(s) 216
SaqAI TTAA 3 cut(s) 164, 642, 783
SatI GCNGC 4 cut(s) 457, 460, 507, 955
Sau3AI GATC 5 cut(s) 64, 364, 439, 777, 796
Sau96I GGNCC 1 cut(s) 44
ScaI AGTACT 1 cut(s) 877
SchI GAGTC 1 cut(s) 46
ScrFI CCNGG 2 cut(s) 49, 291
SduI GDGCHC 1 cut(s) 118
SfaNI GCATC 1 cut(s) 937
SinI GGWCC 1 cut(s) 44
SmiMI CAYNNNNRTG 2 cut(s) 99, 590
SmlI CTYRAG 4 cut(s) 35, 213, 487, 552
SmoI CTYRAG 4 cut(s) 35, 213, 487, 552
SpeI ACTAGT 1 cut(s) 872
SsiI CCGC 1 cut(s) 899
SspI AATATT 1 cut(s) 853
SspMI CTAG 2 cut(s) 419, 873
StyD4I CCNGG 2 cut(s) 47, 289
StyI CCWWGG 3 cut(s) 100, 253, 451
TaaI ACNGT 2 cut(s) 808, 991
TaqI TCGA 1 cut(s) 385
TatI WGTACW 1 cut(s) 875
TfiI GAWTC 2 cut(s) 349, 710
Tru1I TTAA 3 cut(s) 164, 642, 783
Tru9I TTAA 3 cut(s) 164, 642, 783
TscAI CASTG 4 cut(s) 592, 654, 813, 915
TseFI GTSAC 1 cut(s) 910
TseI GCWGC 4 cut(s) 456, 459, 506, 954
Tsp45I GTSAC 1 cut(s) 910
TspDTI ATGAA 5 cut(s) 92, 233, 492, 615, 834
TspGWI ACGGA 2 cut(s) 314, 929
TspRI CASTG 4 cut(s) 592, 654, 813, 915
Van91I CCANNNNNTGG 1 cut(s) 653
VpaK11BI GGWCC 1 cut(s) 44
VspI ATTAAT 1 cut(s) 783
XapI RAATTY 4 cut(s) 206, 316, 522, 613
XspI CTAG 2 cut(s) 419, 873
ZrmI AGTACT 1 cut(s) 877
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.