Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010772

Physical Location & Seq

Genomic Coordinates Forward (+)

17282096 .. 17283178

Gene Structure 1083 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0185700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGATTCCCACAAGGGCAGAAGAAGAAAAAAAAGCATATGAGATTGCAGAAAACAACCAGGATTCTGAGTCAAAGCAAAGTGATCATGATGATGATGAAGGAGTAGCTGATCATCATGAGGATGATAATTTGAGAGATTGGTTGAGCTTAAGCCTCAATAAAAATGATCCATCATCAAAACCAGGCAGTAGTAGCAGCAAAAATAAGGTTTTCTCATGCAACTTCTGCATGAGGAAGTTTTATAGCTCACAAGCCTTGGGAGGCCATCAGAATGCACACAAAAGAGAGAGAGGAGCTGCAAAGAGGTACCAATCTCATAGGATGATGATGACAACGATGATGGGGTTTCCCTTCAATTCTGTAGCGGCTCGTTCACTTGGTGTTCAGCCTCATTCACTTGTGCAGAAGGAAACCAGACAAGGGTCTTCGACGGTGGCTCGCTCAGGCGGCGATGGTTTGAGCACTGGTTTTGGAATGCCATTCATGCTTGAAGATGCTAGGGATATGTTTTGGCCTGGAAGTTTCCGAGTGGAACACAGATTGCCAAGTAGTACAGATGATCATCATCAATCAGATCATGTACATAATAAACAGCTCGACTTAAATTTACGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

205

Amino Acids

23.14

Weight (kDa)

6.45

Isoelectric Point (pI)

61.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10280 AT5G65230
fragaria_vesca	FvH4_1g20680
malus_domestica	MD01G1031700.v1.1 MD15G1323500.v1.1
prunus_persica	Prupe.6G188300_v2.0.a1
pyrus_communis	pycom01g05920 pycom15g28470
rosa_chinensis	RchiOBHm_Chr2g0113131
rosa_laevigata	RLG00000018046 RLG00000018792
rosa_multiflora	Rmu_sc0005949.1_g000025
rosa_roxburghii	Rroxscaffold_2G00129590 Rroxscaffold_2G00129720
rosa_rugosa	Rorug02G0185700
rosa_samantha	Rh2AG240000 Rh2BG253900 Rh2CG244000 Rh2DG247900
rosa_wichuraiana	Rw2G018780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	306
AccB1I	GGYRCC	1 cut(s)	306
AciI	CCGC	2 cut(s)	365, 447
AclWI	GGATC	1 cut(s)	161
AcsI	RAATTY	1 cut(s)	604
AdeI	CACNNNGTG	1 cut(s)	380
AfaI	GTAC	3 cut(s)	308, 553, 582
AfiI	CCNNNNNNNGG	1 cut(s)	420
AflII	CTTAAG	1 cut(s)	148
AgsI	TTSAA	2 cut(s)	355, 491
AjnI	CCWGG	3 cut(s)	57, 181, 514
AluBI	AGCT	5 cut(s)	107, 147, 246, 296, 595
AluI	AGCT	5 cut(s)	107, 147, 246, 296, 595
Alw21I	GWGCWC	1 cut(s)	464
AlwI	GGATC	1 cut(s)	161
AoxI	GGCC	2 cut(s)	262, 512
ApeKI	GCWGC	2 cut(s)	195, 296
ApoI	RAATTY	1 cut(s)	604
Asp718I	GGTACC	1 cut(s)	306
BanI	GGYRCC	1 cut(s)	306
BbsI	GAAGAC	1 cut(s)	417
Bbv12I	GWGCWC	1 cut(s)	464
BbvI	GCAGC	2 cut(s)	207, 283
BccI	CCATC	4 cut(s)	178, 273, 334, 446
BciT130I	CCWGG	3 cut(s)	59, 183, 516
BclI	TGATCA	3 cut(s)	82, 109, 559
BfaI	CTAG	1 cut(s)	498
BfmI	CTRYAG	1 cut(s)	360
BfrI	CTTAAG	1 cut(s)	148
BisI	GCNGC	4 cut(s)	196, 297, 366, 448
BlsI	GCNGC	4 cut(s)	197, 298, 367, 449
Bme1390I	CCNGG	3 cut(s)	59, 183, 516
BmiI	GGNNCC	1 cut(s)	308
BmrFI	CCNGG	3 cut(s)	59, 183, 516
BmsI	GCATC	1 cut(s)	484
BoxI	GACNNNNGTC	1 cut(s)	421
BpiI	GAAGAC	1 cut(s)	417
Bpu10I	CCTNAGC	1 cut(s)	442
BsaBI	GATNNNNATC	2 cut(s)	561, 564
BsaJI	CCNNGG	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	1 cut(s)	420
Bse1I	ACTGG	1 cut(s)	469
Bse8I	GATNNNNATC	2 cut(s)	561, 564
BseBI	CCWGG	3 cut(s)	59, 183, 516
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	2 cut(s)	127, 327
BseJI	GATNNNNATC	2 cut(s)	561, 564
BseLI	CCNNNNNNNGG	1 cut(s)	420
BseMII	CTCAG	2 cut(s)	57, 456
BseNI	ACTGG	1 cut(s)	469
BseRI	GAGGAG	1 cut(s)	306
BseXI	GCAGC	2 cut(s)	207, 283
BsgI	GTGCAG	1 cut(s)	422
BshFI	GGCC	2 cut(s)	264, 514
BshNI	GGYRCC	1 cut(s)	306
BsiHKAI	GWGCWC	1 cut(s)	464
BslI	CCNNNNNNNGG	1 cut(s)	420
BsmI	GAATGC	2 cut(s)	277, 480
BsnI	GGCC	2 cut(s)	264, 514
Bsp1286I	GDGCHC	1 cut(s)	464
Bsp1407I	TGTACA	1 cut(s)	580
Bsp143I	GATC	5 cut(s)	82, 109, 166, 559, 574
BspACI	CCGC	2 cut(s)	365, 447
BspANI	GGCC	2 cut(s)	264, 514
BspCNI	CTCAG	2 cut(s)	58, 455
BspHI	TCATGA	2 cut(s)	85, 115
BspLI	GGNNCC	1 cut(s)	308
BspPI	GGATC	1 cut(s)	161
BspT107I	GGYRCC	1 cut(s)	306
BspTI	CTTAAG	1 cut(s)	148
BsrGI	TGTACA	1 cut(s)	580
BsrI	ACTGG	1 cut(s)	469
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	5 cut(s)	82, 109, 166, 559, 574
BssT1I	CCWWGG	1 cut(s)	255
Bst2UI	CCWGG	3 cut(s)	59, 183, 516
Bst4CI	ACNGT	1 cut(s)	433
BstAFI	CTTAAG	1 cut(s)	148
BstAPI	GCANNNNNTGC	1 cut(s)	225
BstAUI	TGTACA	1 cut(s)	580
BstC8I	GCNNGC	1 cut(s)	439
BstDEI	CTNAG	2 cut(s)	66, 442
BstF5I	GGATG	2 cut(s)	127, 327
BstKTI	GATC	5 cut(s)	85, 112, 169, 562, 577
BstMBI	GATC	5 cut(s)	82, 109, 166, 559, 574
BstMWI	GCNNNNNNNGC	4 cut(s)	192, 225, 447, 484
BstNI	CCWGG	3 cut(s)	59, 183, 516
BstPAI	GACNNNNGTC	1 cut(s)	421
BstSCI	CCNGG	3 cut(s)	57, 181, 514
BstSFI	CTRYAG	1 cut(s)	360
BstV1I	GCAGC	2 cut(s)	207, 283
BstV2I	GAAGAC	1 cut(s)	417
BsuRI	GGCC	2 cut(s)	264, 514
BtgZI	GCGATG	1 cut(s)	465
BtsCI	GGATG	2 cut(s)	127, 327
BtsIMutI	CAGTG	1 cut(s)	462
Cac8I	GCNNGC	1 cut(s)	439
CciI	TCATGA	2 cut(s)	85, 115
Csp6I	GTAC	3 cut(s)	307, 552, 581
CviAII	CATG	6 cut(s)	86, 116, 216, 229, 484, 578
CviQI	GTAC	3 cut(s)	307, 552, 581
DdeI	CTNAG	2 cut(s)	66, 442
DpnI	GATC	5 cut(s)	84, 111, 168, 561, 576
DpnII	GATC	5 cut(s)	82, 109, 166, 559, 574
DraIII	CACNNNGTG	1 cut(s)	380
Eco130I	CCWWGG	1 cut(s)	255
EcoRII	CCWGG	3 cut(s)	57, 181, 514
EcoT14I	CCWWGG	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	6 cut(s)	89, 119, 219, 232, 487, 581
FatI	CATG	6 cut(s)	85, 115, 215, 228, 483, 577
FauNDI	CATATG	1 cut(s)	37
FbaI	TGATCA	3 cut(s)	82, 109, 559
Fnu4HI	GCNGC	4 cut(s)	196, 297, 366, 448
FokI	GGATG	2 cut(s)	134, 334
Fsp4HI	GCNGC	4 cut(s)	196, 297, 366, 448
FspBI	CTAG	1 cut(s)	498
GluI	GCNGC	4 cut(s)	196, 297, 366, 448
HaeIII	GGCC	2 cut(s)	264, 514
Hin1II	CATG	6 cut(s)	89, 119, 219, 232, 487, 581
HinfI	GANTC	3 cut(s)	4, 62, 68
Hpy166II	GTNNAC	1 cut(s)	374
Hpy188I	TCNGA	4 cut(s)	67, 270, 527, 574
Hpy188III	TCNNGA	2 cut(s)	86, 116
Hpy8I	GTNNAC	1 cut(s)	374
Hpy99I	CGWCG	1 cut(s)	433
HpyAV	CCTTC	3 cut(s)	92, 361, 400
HpyCH4III	ACNGT	1 cut(s)	433
HpyCH4V	TGCA	6 cut(s)	47, 219, 228, 275, 299, 403
HpyF10VI	GCNNNNNNNGC	4 cut(s)	192, 225, 447, 484
HpyF3I	CTNAG	2 cut(s)	66, 442
Hsp92II	CATG	6 cut(s)	89, 119, 219, 232, 487, 581
KpnI	GGTACC	1 cut(s)	310
Ksp22I	TGATCA	3 cut(s)	82, 109, 559
Kzo9I	GATC	5 cut(s)	82, 109, 166, 559, 574
LmnI	GCTCC	1 cut(s)	293
LpnPI	CCDG	9 cut(s)	44, 71, 168, 195, 427, 429, 450, 501, 528
Lsp1109I	GCAGC	2 cut(s)	207, 283
LweI	GCATC	1 cut(s)	484
MaeI	CTAG	1 cut(s)	498
MalI	GATC	5 cut(s)	84, 111, 168, 561, 576
MboI	GATC	5 cut(s)	82, 109, 166, 559, 574
MboII	GAAGA	4 cut(s)	32, 35, 417, 503
MhlI	GDGCHC	1 cut(s)	464
MluCI	AATT	3 cut(s)	127, 355, 604
MlyI	GAGTC	1 cut(s)	77
MnlI	CCTC	7 cut(s)	112, 164, 225, 254, 284, 297, 399
MseI	TTAA	2 cut(s)	149, 602
MslI	CAYNNNNRTG	3 cut(s)	90, 120, 270
MspCI	CTTAAG	1 cut(s)	148
MspR9I	CCNGG	3 cut(s)	59, 183, 516
Mva1269I	GAATGC	2 cut(s)	277, 480
MvaI	CCWGG	3 cut(s)	59, 183, 516
MwoI	GCNNNNNNNGC	4 cut(s)	192, 225, 447, 484
NdeI	CATATG	1 cut(s)	37
NdeII	GATC	5 cut(s)	82, 109, 166, 559, 574
NlaIII	CATG	6 cut(s)	89, 119, 219, 232, 487, 581
NlaIV	GGNNCC	1 cut(s)	308
PagI	TCATGA	2 cut(s)	85, 115
PctI	GAATGC	2 cut(s)	277, 480
PfeI	GAWTC	2 cut(s)	4, 62
PkrI	GCNGC	4 cut(s)	197, 298, 367, 449
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PshAI	GACNNNNGTC	1 cut(s)	421
Psp6I	CCWGG	3 cut(s)	57, 181, 514
PspGI	CCWGG	3 cut(s)	57, 181, 514
PspN4I	GGNNCC	1 cut(s)	308
RsaI	GTAC	3 cut(s)	308, 553, 582
RsaNI	GTAC	3 cut(s)	307, 552, 581
RseI	CAYNNNNRTG	3 cut(s)	90, 120, 270
SaqAI	TTAA	2 cut(s)	149, 602
SatI	GCNGC	4 cut(s)	196, 297, 366, 448
Sau3AI	GATC	5 cut(s)	82, 109, 166, 559, 574
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	3 cut(s)	59, 183, 516
SduI	GDGCHC	1 cut(s)	464
SetI	ASST	7 cut(s)	109, 149, 210, 248, 298, 308, 597
SfaNI	GCATC	1 cut(s)	484
SfcI	CTRYAG	1 cut(s)	360
SmiMI	CAYNNNNRTG	3 cut(s)	90, 120, 270
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
Sse9I	AATT	3 cut(s)	127, 355, 604
SsiI	CCGC	2 cut(s)	365, 447
SspMI	CTAG	1 cut(s)	498
StyD4I	CCNGG	3 cut(s)	57, 181, 514
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	1 cut(s)	433
TaqI	TCGA	2 cut(s)	428, 597
TasI	AATT	3 cut(s)	127, 355, 604
TatI	WGTACW	2 cut(s)	551, 580
TauI	GCSGC	2 cut(s)	368, 450
TfiI	GAWTC	2 cut(s)	4, 62
Tru1I	TTAA	2 cut(s)	149, 602
Tru9I	TTAA	2 cut(s)	149, 602
TscAI	CASTG	1 cut(s)	469
TseI	GCWGC	2 cut(s)	195, 296
TspDTI	ATGAA	2 cut(s)	111, 472
TspRI	CASTG	1 cut(s)	469
Vha464I	CTTAAG	1 cut(s)	148
XapI	RAATTY	1 cut(s)	604
XspI	CTAG	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.