Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0010772

Physical Location & Seq

Genomic Coordinates Reverse (-)

25580472 .. 25581167

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG244000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGGTTTTGATCCGATGACCCACCGGCCTCGAACTGACATCTTCTCCAGCTTGCCACACCTTCTAGCTCTTGTCAATTTGAAAGATCTTATTGACCAAGGCAGCAGCCAGACATCTTGGGATGAACAAGCCTTGAGACTACAAGCAGAAGCTGCTCAAATGGCTAAAATTCAATACCTACAATACCTCCTCCAACCTCAAGCTTCTACCTCAAACAACCTAAGCGATTTCACTGACATGGAGACAATTGGTCTTTTGAATTCACTCTGTTCATCAATCAAAGATGTTAATCCAGTGTTTGGTTCATCGCAGTTGGAAACCTCAGCACAATACCTTGGATCATCTTCGGTGCAGGATTCAATCCCTTTCTCTCCTTTGCCTGATTTGCAAATGGTACCCTCCTCTGCTTATCAAAAGGACGTGATCATTAATCAAGCTCCAGATCAGTTTACAGTGGTGAGCCAACTGGACAACTCTCCCAACAATAATTCATGGAATATTCCTTCCTCTTCAAATACTAGTACTCCCTCTCCTCCTTCTGTGGCGGTTCCTCCTGTGACGGAGACTTCAACAAGCAATAATAATATGGGTGATGCTTGCAGCACTACTACTTCAAGCTATGGAGGAGTGGCTACTATTTCTGCTTGGTCTGACCTACTTCTGGAGGACTACCCTTTTTTCAATGAGATTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

231

Amino Acids

25.0

Weight (kDa)

4.05

Isoelectric Point (pI)

53.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10280 AT5G65230
fragaria_vesca	FvH4_1g20680
malus_domestica	MD01G1031700.v1.1 MD15G1323500.v1.1
prunus_persica	Prupe.6G188300_v2.0.a1
pyrus_communis	pycom01g05920 pycom15g28470
rosa_chinensis	RchiOBHm_Chr2g0113131
rosa_laevigata	RLG00000018046 RLG00000018792
rosa_multiflora	Rmu_sc0005949.1_g000025
rosa_roxburghii	Rroxscaffold_2G00129590 Rroxscaffold_2G00129720
rosa_rugosa	Rorug02G0185700
rosa_samantha	Rh2AG240000 Rh2BG253900 Rh2CG244000 Rh2DG247900
rosa_wichuraiana	Rw2G018780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	394
AccB1I	GGYRCC	1 cut(s)	394
AccB7I	CCANNNNNTGG	1 cut(s)	299
AciI	CCGC	1 cut(s)	545
AclWI	GGATC	2 cut(s)	5, 346
AcsI	RAATTY	2 cut(s)	168, 259
AfaI	GTAC	2 cut(s)	396, 523
AfiI	CCNNNNNNNGG	2 cut(s)	299, 661
AgsI	TTSAA	8 cut(s)	82, 173, 259, 360, 513, 570, 615, 682
AhdI	GACNNNNNGTC	1 cut(s)	249
AhlI	ACTAGT	1 cut(s)	518
AjiI	CACGTC	1 cut(s)	421
AluBI	AGCT	6 cut(s)	51, 68, 152, 203, 437, 618
AluI	AGCT	6 cut(s)	51, 68, 152, 203, 437, 618
Alw26I	GTCTC	3 cut(s)	130, 236, 557
AlwI	GGATC	2 cut(s)	5, 346
AlwNI	CAGNNNCTG	1 cut(s)	152
AoxI	GGCC	1 cut(s)	26
ApeKI	GCWGC	4 cut(s)	102, 105, 152, 600
ApoI	RAATTY	2 cut(s)	168, 259
AseI	ATTAAT	1 cut(s)	429
Asp718I	GGTACC	1 cut(s)	394
AsuHPI	GGTGA	2 cut(s)	469, 602
BanI	GGYRCC	1 cut(s)	394
BbvCI	CCTCAGC	1 cut(s)	322
BbvI	GCAGC	4 cut(s)	114, 117, 139, 612
BclI	TGATCA	1 cut(s)	423
BcoDI	GTCTC	3 cut(s)	130, 236, 557
BcuI	ACTAGT	1 cut(s)	518
BfaI	CTAG	2 cut(s)	65, 519
BglII	AGATCT	1 cut(s)	85
BisI	GCNGC	4 cut(s)	103, 106, 153, 601
BlsI	GCNGC	4 cut(s)	104, 107, 154, 602
BmcAI	AGTACT	1 cut(s)	523
BmeRI	GACNNNNNGTC	1 cut(s)	249
BmgBI	CACGTC	1 cut(s)	421
BmiI	GGNNCC	2 cut(s)	396, 549
BmsI	GCATC	1 cut(s)	583
BpmI	CTGGAG	3 cut(s)	31, 423, 683
Bpu10I	CCTNAGC	2 cut(s)	221, 322
BpuEI	CTTGAG	2 cut(s)	154, 183
BsaBI	GATNNNNATC	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	97, 334
BsaXI	ACNNNNNCTCC	8 cut(s)	29, 59, 171, 201, 508, 514, 538, 544
Bsc4I	CCNNNNNNNGG	2 cut(s)	299, 661
Bse118I	RCCGGY	1 cut(s)	24
Bse1I	ACTGG	2 cut(s)	293, 471
Bse8I	GATNNNNATC	1 cut(s)	288
BseDI	CCNNGG	2 cut(s)	97, 334
BseGI	GGATG	1 cut(s)	127
BseJI	GATNNNNATC	1 cut(s)	288
BseLI	CCNNNNNNNGG	2 cut(s)	299, 661
BseMII	CTCAG	1 cut(s)	336
BseNI	ACTGG	2 cut(s)	293, 471
BseRI	GAGGAG	4 cut(s)	179, 391, 522, 639
BseXI	GCAGC	4 cut(s)	114, 117, 139, 612
BsgI	GTGCAG	1 cut(s)	371
BshFI	GGCC	1 cut(s)	28
BshNI	GGYRCC	1 cut(s)	394
BsiSI	CCGG	1 cut(s)	25
BslI	CCNNNNNNNGG	2 cut(s)	299, 661
BsmAI	GTCTC	3 cut(s)	130, 236, 557
BsnI	GGCC	1 cut(s)	28
Bsp143I	GATC	5 cut(s)	10, 85, 338, 423, 442
BspACI	CCGC	1 cut(s)	545
BspANI	GGCC	1 cut(s)	28
BspCNI	CTCAG	1 cut(s)	335
BspLI	GGNNCC	2 cut(s)	396, 549
BspPI	GGATC	2 cut(s)	5, 346
BspT107I	GGYRCC	1 cut(s)	394
BsrFI	RCCGGY	1 cut(s)	24
BsrI	ACTGG	2 cut(s)	293, 471
BssAI	RCCGGY	1 cut(s)	24
BssECI	CCNNGG	2 cut(s)	97, 334
BssMI	GATC	5 cut(s)	10, 85, 338, 423, 442
BssT1I	CCWWGG	2 cut(s)	97, 334
Bst4CI	ACNGT	1 cut(s)	454
Bst6I	CTCTTC	1 cut(s)	514
BstAPI	GCANNNNNTGC	1 cut(s)	152
BstC8I	GCNNGC	2 cut(s)	53, 598
BstDEI	CTNAG	3 cut(s)	221, 322, 693
BstF5I	GGATG	1 cut(s)	127
BstKTI	GATC	5 cut(s)	13, 88, 341, 426, 445
BstMAI	GTCTC	3 cut(s)	130, 236, 557
BstMBI	GATC	5 cut(s)	10, 85, 338, 423, 442
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 161, 385
BstV1I	GCAGC	4 cut(s)	114, 117, 139, 612
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BsuRI	GGCC	1 cut(s)	28
BtgZI	GCGATG	1 cut(s)	291
BtrI	CACGTC	1 cut(s)	421
BtsCI	GGATG	1 cut(s)	127
BtsIMutI	CAGTG	3 cut(s)	231, 300, 459
Cac8I	GCNNGC	2 cut(s)	53, 598
CaiI	CAGNNNCTG	1 cut(s)	152
Cfr10I	RCCGGY	1 cut(s)	24
Csp6I	GTAC	2 cut(s)	395, 522
CviAII	CATG	2 cut(s)	238, 492
CviQI	GTAC	2 cut(s)	395, 522
DdeI	CTNAG	3 cut(s)	221, 322, 693
DpnI	GATC	5 cut(s)	12, 87, 340, 425, 444
DpnII	GATC	5 cut(s)	10, 85, 338, 423, 442
DriI	GACNNNNNGTC	1 cut(s)	249
Eam1104I	CTCTTC	1 cut(s)	514
Eam1105I	GACNNNNNGTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	514
Eco130I	CCWWGG	2 cut(s)	97, 334
EcoRI	GAATTC	1 cut(s)	259
EcoT14I	CCWWGG	2 cut(s)	97, 334
ErhI	CCWWGG	2 cut(s)	97, 334
FaeI	CATG	2 cut(s)	241, 495
FaiI	YATR	4 cut(s)	239, 493, 587, 621
FatI	CATG	2 cut(s)	237, 491
FbaI	TGATCA	1 cut(s)	423
Fnu4HI	GCNGC	4 cut(s)	103, 106, 153, 601
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	4 cut(s)	103, 106, 153, 601
FspBI	CTAG	2 cut(s)	65, 519
GluI	GCNGC	4 cut(s)	103, 106, 153, 601
GsuI	CTGGAG	3 cut(s)	31, 423, 683
HaeIII	GGCC	1 cut(s)	28
HapII	CCGG	1 cut(s)	25
Hin1II	CATG	2 cut(s)	241, 495
HindIII	AAGCTT	1 cut(s)	201
HinfI	GANTC	1 cut(s)	356
HpaII	CCGG	1 cut(s)	25
HphI	GGTGA	2 cut(s)	469, 602
Hpy166II	GTNNAC	1 cut(s)	450
Hpy188I	TCNGA	2 cut(s)	15, 652
Hpy188III	TCNNGA	2 cut(s)	440, 662
Hpy8I	GTNNAC	1 cut(s)	450
HpyAV	CCTTC	3 cut(s)	71, 513, 546
HpyCH4III	ACNGT	1 cut(s)	454
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	3 cut(s)	352, 388, 600
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 161, 385
HpyF3I	CTNAG	3 cut(s)	221, 322, 693
HpySE526I	ACGT	1 cut(s)	420
Hsp92II	CATG	2 cut(s)	241, 495
KpnI	GGTACC	1 cut(s)	398
Ksp22I	TGATCA	1 cut(s)	423
Kzo9I	GATC	5 cut(s)	10, 85, 338, 423, 442
LmnI	GCTCC	1 cut(s)	442
Lsp1109I	GCAGC	4 cut(s)	114, 117, 139, 612
LweI	GCATC	1 cut(s)	583
MaeI	CTAG	2 cut(s)	65, 519
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	1 cut(s)	556
MalI	GATC	5 cut(s)	12, 87, 340, 425, 444
MboI	GATC	5 cut(s)	10, 85, 338, 423, 442
MboII	GAAGA	3 cut(s)	34, 336, 501
MfeI	CAATTG	1 cut(s)	246
MflI	RGATCY	1 cut(s)	85
MluCI	AATT	5 cut(s)	76, 168, 246, 259, 487
MmeI	TCCRAC	2 cut(s)	217, 294
MseI	TTAA	2 cut(s)	288, 429
MslI	CAYNNNNRTG	1 cut(s)	236
MspI	CCGG	1 cut(s)	25
MunI	CAATTG	1 cut(s)	246
MwoI	GCNNNNNNNGC	3 cut(s)	152, 161, 385
NdeII	GATC	5 cut(s)	10, 85, 338, 423, 442
NlaIII	CATG	2 cut(s)	241, 495
NlaIV	GGNNCC	2 cut(s)	396, 549
NmuCI	GTSAC	1 cut(s)	556
PfeI	GAWTC	1 cut(s)	356
PflMI	CCANNNNNTGG	1 cut(s)	299
PkrI	GCNGC	4 cut(s)	104, 107, 154, 602
PshBI	ATTAAT	1 cut(s)	429
PspN4I	GGNNCC	2 cut(s)	396, 549
PstNI	CAGNNNCTG	1 cut(s)	152
PsuI	RGATCY	1 cut(s)	85
RsaI	GTAC	2 cut(s)	396, 523
RsaNI	GTAC	2 cut(s)	395, 522
RseI	CAYNNNNRTG	1 cut(s)	236
SaqAI	TTAA	2 cut(s)	288, 429
SatI	GCNGC	4 cut(s)	103, 106, 153, 601
Sau3AI	GATC	5 cut(s)	10, 85, 338, 423, 442
ScaI	AGTACT	1 cut(s)	523
SfaNI	GCATC	1 cut(s)	583
SmiMI	CAYNNNNRTG	1 cut(s)	236
SmlI	CTYRAG	2 cut(s)	133, 198
SmoI	CTYRAG	2 cut(s)	133, 198
SpeI	ACTAGT	1 cut(s)	518
Sse9I	AATT	5 cut(s)	76, 168, 246, 259, 487
SsiI	CCGC	1 cut(s)	545
SspI	AATATT	1 cut(s)	499
SspMI	CTAG	2 cut(s)	65, 519
StyI	CCWWGG	2 cut(s)	97, 334
TaaI	ACNGT	1 cut(s)	454
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	1 cut(s)	31
TasI	AATT	5 cut(s)	76, 168, 246, 259, 487
TatI	WGTACW	1 cut(s)	521
TfiI	GAWTC	1 cut(s)	356
Tru1I	TTAA	2 cut(s)	288, 429
Tru9I	TTAA	2 cut(s)	288, 429
TscAI	CASTG	3 cut(s)	238, 300, 459
TseFI	GTSAC	1 cut(s)	556
TseI	GCWGC	4 cut(s)	102, 105, 152, 600
Tsp45I	GTSAC	1 cut(s)	556
TspDTI	ATGAA	4 cut(s)	138, 261, 294, 480
TspGWI	ACGGA	1 cut(s)	575
TspRI	CASTG	3 cut(s)	238, 300, 459
Van91I	CCANNNNNTGG	1 cut(s)	299
VspI	ATTAAT	1 cut(s)	429
XapI	RAATTY	2 cut(s)	168, 259
XspI	CTAG	2 cut(s)	65, 519
ZrmI	AGTACT	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.