Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0010772

Physical Location & Seq

Genomic Coordinates Reverse (-)

36300107 .. 36300846

Gene Structure 740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018792

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGGTTTGAAGAAAAAGCTGATTCAGATGGGTTTTGATCCAATGACCCACCGGCCTCGAACTGACATCTTCTCCAGCTTGCCACACCTTCTAGCTCTTGTCAATTTGACAGATCTTATTGACCAAGGCAGCAGCCAGACATCTCGGGATGAACAAGCCTTGAGACTACAAGCAGAAACTGCTCAAATGGCTAAAATTCAATACCTACAATACCTCCTCCAACCTCAAGCTTCTACCTCAAAAAACCTAAGCGATTTCACTGACATGGAGACAATTGATTCAATCCCTTTCTCTCCTTTGCTTGATTTGCAAATGGTACCCTCCTCTGCTTATCAAAAAGACGTGATCATTAGTCAAGCTCTAGATCAGTTTACAGTGTTGAGCCAAGTGGACAACTCTCCCAACAATAATTCATGGAATATTCCTTCCTCTTCAAATACTAGTACTCCCTCTCCTCCTTCTGTGGCGGTTCCTCCTGTGACGGAGACTTCAACAAGCAATAATAATATGGGTGATGCTTGCAGCACTACTACTTCAAGCTATAGAGGAGTGGCTACTATTTCTGCTTGGCCTGACCTACTTCTGGAGGACTACCCATTTTTCAATGAGATTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

206

Amino Acids

22.54

Weight (kDa)

4.39

Isoelectric Point (pI)

51.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10280 AT5G65230
fragaria_vesca	FvH4_1g20680
malus_domestica	MD01G1031700.v1.1 MD15G1323500.v1.1
prunus_persica	Prupe.6G188300_v2.0.a1
pyrus_communis	pycom01g05920 pycom15g28470
rosa_chinensis	RchiOBHm_Chr2g0113131
rosa_laevigata	RLG00000018046 RLG00000018792
rosa_multiflora	Rmu_sc0005949.1_g000025
rosa_roxburghii	Rroxscaffold_2G00129590 Rroxscaffold_2G00129720
rosa_rugosa	Rorug02G0185700
rosa_samantha	Rh2AG240000 Rh2BG253900 Rh2CG244000 Rh2DG247900
rosa_wichuraiana	Rw2G018780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	316
AccB1I	GGYRCC	1 cut(s)	316
AciI	CCGC	1 cut(s)	467
AclWI	GGATC	1 cut(s)	32
AcsI	RAATTY	1 cut(s)	195
AfaI	GTAC	2 cut(s)	318, 445
AfiI	CCNNNNNNNGG	1 cut(s)	583
AgsI	TTSAA	7 cut(s)	10, 200, 282, 435, 492, 537, 604
AhlI	ACTAGT	1 cut(s)	440
AjiI	CACGTC	1 cut(s)	343
AluBI	AGCT	6 cut(s)	19, 78, 95, 230, 359, 540
AluI	AGCT	6 cut(s)	19, 78, 95, 230, 359, 540
Alw26I	GTCTC	3 cut(s)	157, 263, 479
AlwI	GGATC	1 cut(s)	32
AlwNI	CAGNNNCTG	1 cut(s)	179
Ama87I	CYCGRG	1 cut(s)	144
AoxI	GGCC	2 cut(s)	53, 569
ApeKI	GCWGC	3 cut(s)	129, 132, 522
ApoI	RAATTY	1 cut(s)	195
Asp718I	GGTACC	1 cut(s)	316
AsuHPI	GGTGA	1 cut(s)	524
AvaI	CYCGRG	1 cut(s)	144
BanI	GGYRCC	1 cut(s)	316
BbvI	GCAGC	3 cut(s)	141, 144, 534
BccI	CCATC	1 cut(s)	22
BclI	TGATCA	1 cut(s)	345
BcoDI	GTCTC	3 cut(s)	157, 263, 479
BcuI	ACTAGT	1 cut(s)	440
BfaI	CTAG	3 cut(s)	92, 362, 441
BfmI	CTRYAG	1 cut(s)	541
BglII	AGATCT	1 cut(s)	112
BisI	GCNGC	3 cut(s)	130, 133, 523
BlsI	GCNGC	3 cut(s)	131, 134, 524
BmcAI	AGTACT	1 cut(s)	445
BmeT110I	CYCGRG	1 cut(s)	144
BmgBI	CACGTC	1 cut(s)	343
BmiI	GGNNCC	2 cut(s)	318, 471
BmsI	GCATC	1 cut(s)	505
BpmI	CTGGAG	2 cut(s)	58, 605
Bpu10I	CCTNAGC	1 cut(s)	248
BpuEI	CTTGAG	2 cut(s)	181, 210
BsaJI	CCNNGG	1 cut(s)	124
BsaXI	ACNNNNNCTCC	8 cut(s)	56, 86, 198, 228, 430, 436, 460, 466
Bsc4I	CCNNNNNNNGG	1 cut(s)	583
Bse118I	RCCGGY	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	124
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	583
BseRI	GAGGAG	4 cut(s)	206, 313, 444, 561
BseXI	GCAGC	3 cut(s)	141, 144, 534
BshFI	GGCC	2 cut(s)	55, 571
BshNI	GGYRCC	1 cut(s)	316
BsiHKCI	CYCGRG	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	52
BslI	CCNNNNNNNGG	1 cut(s)	583
BsmAI	GTCTC	3 cut(s)	157, 263, 479
BsnI	GGCC	2 cut(s)	55, 571
BsoBI	CYCGRG	1 cut(s)	144
Bsp143I	GATC	4 cut(s)	37, 112, 345, 364
BspACI	CCGC	1 cut(s)	467
BspANI	GGCC	2 cut(s)	55, 571
BspLI	GGNNCC	2 cut(s)	318, 471
BspPI	GGATC	1 cut(s)	32
BspT107I	GGYRCC	1 cut(s)	316
BsrFI	RCCGGY	1 cut(s)	51
BssAI	RCCGGY	1 cut(s)	51
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	4 cut(s)	37, 112, 345, 364
BssT1I	CCWWGG	1 cut(s)	124
Bst4CI	ACNGT	1 cut(s)	376
Bst6I	CTCTTC	1 cut(s)	436
BstAPI	GCANNNNNTGC	1 cut(s)	179
BstC8I	GCNNGC	2 cut(s)	80, 520
BstDEI	CTNAG	2 cut(s)	248, 615
BstF5I	GGATG	1 cut(s)	154
BstKTI	GATC	4 cut(s)	40, 115, 348, 367
BstMAI	GTCTC	3 cut(s)	157, 263, 479
BstMBI	GATC	4 cut(s)	37, 112, 345, 364
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 188, 307
BstSFI	CTRYAG	1 cut(s)	541
BstV1I	GCAGC	3 cut(s)	141, 144, 534
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
BsuRI	GGCC	2 cut(s)	55, 571
BtrI	CACGTC	1 cut(s)	343
BtsCI	GGATG	1 cut(s)	154
BtsIMutI	CAGTG	2 cut(s)	258, 381
Cac8I	GCNNGC	2 cut(s)	80, 520
CaiI	CAGNNNCTG	1 cut(s)	179
Cfr10I	RCCGGY	1 cut(s)	51
Csp6I	GTAC	2 cut(s)	317, 444
CviAII	CATG	2 cut(s)	265, 414
CviQI	GTAC	2 cut(s)	317, 444
DdeI	CTNAG	2 cut(s)	248, 615
DpnI	GATC	4 cut(s)	39, 114, 347, 366
DpnII	GATC	4 cut(s)	37, 112, 345, 364
Eam1104I	CTCTTC	1 cut(s)	436
EarI	CTCTTC	1 cut(s)	436
Eco130I	CCWWGG	1 cut(s)	124
Eco88I	CYCGRG	1 cut(s)	144
EcoT14I	CCWWGG	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	124
FaeI	CATG	2 cut(s)	268, 417
FaiI	YATR	4 cut(s)	266, 415, 509, 543
FatI	CATG	2 cut(s)	264, 413
FbaI	TGATCA	1 cut(s)	345
Fnu4HI	GCNGC	3 cut(s)	130, 133, 523
FokI	GGATG	1 cut(s)	161
Fsp4HI	GCNGC	3 cut(s)	130, 133, 523
FspBI	CTAG	3 cut(s)	92, 362, 441
GluI	GCNGC	3 cut(s)	130, 133, 523
GsuI	CTGGAG	2 cut(s)	58, 605
HaeIII	GGCC	2 cut(s)	55, 571
HapII	CCGG	1 cut(s)	52
Hin1II	CATG	2 cut(s)	268, 417
HindIII	AAGCTT	1 cut(s)	228
HinfI	GANTC	2 cut(s)	22, 278
HpaII	CCGG	1 cut(s)	52
HphI	GGTGA	1 cut(s)	524
Hpy166II	GTNNAC	2 cut(s)	372, 391
Hpy188I	TCNGA	1 cut(s)	27
Hpy188III	TCNNGA	3 cut(s)	146, 362, 584
Hpy8I	GTNNAC	2 cut(s)	372, 391
HpyAV	CCTTC	3 cut(s)	98, 435, 468
HpyCH4III	ACNGT	1 cut(s)	376
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	2 cut(s)	310, 522
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 188, 307
HpyF3I	CTNAG	2 cut(s)	248, 615
HpySE526I	ACGT	1 cut(s)	342
Hsp92II	CATG	2 cut(s)	268, 417
KpnI	GGTACC	1 cut(s)	320
Ksp22I	TGATCA	1 cut(s)	345
Kzo9I	GATC	4 cut(s)	37, 112, 345, 364
LpnPI	CCDG	6 cut(s)	65, 88, 149, 489, 569, 585
Lsp1109I	GCAGC	3 cut(s)	141, 144, 534
LweI	GCATC	1 cut(s)	505
MaeI	CTAG	3 cut(s)	92, 362, 441
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	1 cut(s)	478
MalI	GATC	4 cut(s)	39, 114, 347, 366
MboI	GATC	4 cut(s)	37, 112, 345, 364
MboII	GAAGA	3 cut(s)	22, 61, 423
MfeI	CAATTG	1 cut(s)	273
MflI	RGATCY	1 cut(s)	112
MluCI	AATT	4 cut(s)	103, 195, 273, 409
MmeI	TCCRAC	1 cut(s)	244
MslI	CAYNNNNRTG	1 cut(s)	263
MspI	CCGG	1 cut(s)	52
MunI	CAATTG	1 cut(s)	273
MwoI	GCNNNNNNNGC	3 cut(s)	179, 188, 307
NdeII	GATC	4 cut(s)	37, 112, 345, 364
NlaIII	CATG	2 cut(s)	268, 417
NlaIV	GGNNCC	2 cut(s)	318, 471
NmuCI	GTSAC	1 cut(s)	478
PfeI	GAWTC	2 cut(s)	22, 278
PkrI	GCNGC	3 cut(s)	131, 134, 524
PspN4I	GGNNCC	2 cut(s)	318, 471
PstNI	CAGNNNCTG	1 cut(s)	179
PsuI	RGATCY	1 cut(s)	112
RsaI	GTAC	2 cut(s)	318, 445
RsaNI	GTAC	2 cut(s)	317, 444
RseI	CAYNNNNRTG	1 cut(s)	263
SatI	GCNGC	3 cut(s)	130, 133, 523
Sau3AI	GATC	4 cut(s)	37, 112, 345, 364
ScaI	AGTACT	1 cut(s)	445
SfaNI	GCATC	1 cut(s)	505
SfcI	CTRYAG	1 cut(s)	541
SmiMI	CAYNNNNRTG	1 cut(s)	263
SmlI	CTYRAG	2 cut(s)	160, 225
SmoI	CTYRAG	2 cut(s)	160, 225
SpeI	ACTAGT	1 cut(s)	440
Sse9I	AATT	4 cut(s)	103, 195, 273, 409
SsiI	CCGC	1 cut(s)	467
SspI	AATATT	1 cut(s)	421
SspMI	CTAG	3 cut(s)	92, 362, 441
StyI	CCWWGG	1 cut(s)	124
TaaI	ACNGT	1 cut(s)	376
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	1 cut(s)	58
TasI	AATT	4 cut(s)	103, 195, 273, 409
TatI	WGTACW	1 cut(s)	443
TfiI	GAWTC	2 cut(s)	22, 278
TscAI	CASTG	2 cut(s)	265, 381
TseFI	GTSAC	1 cut(s)	478
TseI	GCWGC	3 cut(s)	129, 132, 522
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	2 cut(s)	165, 402
TspGWI	ACGGA	1 cut(s)	497
TspRI	CASTG	2 cut(s)	265, 381
XapI	RAATTY	1 cut(s)	195
XbaI	TCTAGA	1 cut(s)	361
XspI	CTAG	3 cut(s)	92, 362, 441
ZrmI	AGTACT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.