Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010772

Physical Location & Seq

Genomic Coordinates Reverse (-)

24451875 .. 24453193

Gene Structure 1319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g28470.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGAAATACATTCAGAAAAATGGCCATGGAAGCTGGAGAGCCCTTCCAAAACTTGCAGGGTTGAACAGATGCGGCAAGAGTTGCAGGTTAAGATGGACAAACTATCTTAGGCCGGATATAAAGAGAGGGAAGTTTTCTCAAGAAGAAGAACAAACAATTCTTAATCTCCATTCCGTCCTCGGCAACAAATGGTCAGCAATTGCAAGCCACCTACCCGGTCGGACAGACAATGAAATCAAAAATTTCTGGAACACCCATTTGAAGAAAAAGCTAATTCAGATGGGTTTTGATCCGATGACTCACCGGCCCCGGACTGATATCTTCTCCAGCTTGCCTCATCTTCTAGCTCTTGTCAATTTGAAAGAGCTTCTAGACCATGGAAGCAGTCACCAATCCAGTTGGGATGAACAAGCTTTGAGATTACAAGCAGAAGCTGCTCAAATGGCTAGGCTTCAATACCTACAATGTCTCCTCCAATCTAATAACAATTCCTTTGGAGCTGCTACCCCAAACAACCTAAATGACTTCACTGACATGGAGACCATTAATCTTTTGAATTCACTCTGTTCATCTCAGCTGGATATTCAAAACCCTACTGCACAATACCCTGTTGGTAATTTTCAACCAGTAGTCCAAGATAATTCGGTCCCTTTCTCTCATTTGCCTGACTTGCAAGCCTATCCAACACCACCAAGCAAGGACATGGTTGATGATCGAGCTCCAGATCAATTTACTGCAGTTTTGAGACAAGATGAAAGCTCTCCAAATAATCCATGGAATATTCCTTCGTCTTCAAATACCACTCCATCTCCTACTTCGGTGGCTCCTCCCGTGACAGTGACAGAGACTTCAGTAAGCAACAACATGGGTGATGCTTGCAGCACTTCAAGCTATGGAGGAGTGGCTACTTCAGCGTGGTCTGACCTTCTTTTTGAGGATCCTTTTTTCAATGAGATTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

321

Amino Acids

35.67

Weight (kDa)

5.98

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10280 AT5G65230
fragaria_vesca	FvH4_1g20680
malus_domestica	MD01G1031700.v1.1 MD15G1323500.v1.1
prunus_persica	Prupe.6G188300_v2.0.a1
pyrus_communis	pycom01g05920 pycom15g28470
rosa_chinensis	RchiOBHm_Chr2g0113131
rosa_laevigata	RLG00000018046 RLG00000018792
rosa_multiflora	Rmu_sc0005949.1_g000025
rosa_roxburghii	Rroxscaffold_2G00129590 Rroxscaffold_2G00129720
rosa_rugosa	Rorug02G0185700
rosa_samantha	Rh2AG240000 Rh2BG253900 Rh2CG244000 Rh2DG247900
rosa_wichuraiana	Rw2G018780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	75
AciI	CCGC	1 cut(s)	72
AclWI	GGATC	3 cut(s)	284, 932, 945
AcoI	YGGCCR	1 cut(s)	22
AcsI	RAATTY	2 cut(s)	241, 556
AcuI	CTGAAG	2 cut(s)	834, 894
Alw21I	GWGCWC	1 cut(s)	721
Alw26I	GTCTC	4 cut(s)	473, 533, 739, 839
AlwI	GGATC	3 cut(s)	284, 932, 945
AlwNI	CAGNNNCTG	1 cut(s)	434
AoxI	GGCC	3 cut(s)	22, 110, 305
ApeKI	GCWGC	3 cut(s)	434, 500, 879
ApoI	RAATTY	2 cut(s)	241, 556
ArsI	GACNNNNNNTTYG	2 cut(s)	914, 946
AseI	ATTAAT	1 cut(s)	546
AspS9I	GGNCC	2 cut(s)	306, 646
AsuC2I	CCSGG	2 cut(s)	216, 310
AsuHPI	GGTGA	3 cut(s)	293, 380, 881
AvaII	GGWCC	1 cut(s)	646
BalI	TGGCCA	1 cut(s)	24
BamHI	GGATCC	1 cut(s)	937
BanII	GRGCYC	2 cut(s)	43, 721
BbsI	GAAGAC	1 cut(s)	783
Bbv12I	GWGCWC	1 cut(s)	721
BbvI	GCAGC	3 cut(s)	421, 487, 891
BccI	CCATC	3 cut(s)	87, 274, 814
BcnI	CCSGG	2 cut(s)	216, 310
BcoDI	GTCTC	4 cut(s)	473, 533, 739, 839
BfaI	CTAG	3 cut(s)	344, 371, 447
BfmI	CTRYAG	1 cut(s)	735
BfuAI	ACCTGC	1 cut(s)	75
BisI	GCNGC	4 cut(s)	73, 435, 501, 880
BlsI	GCNGC	4 cut(s)	74, 436, 502, 881
Bme1390I	CCNGG	2 cut(s)	216, 310
Bme18I	GGWCC	1 cut(s)	646
BmgT120I	GGNCC	2 cut(s)	306, 646
BmiI	GGNNCC	4 cut(s)	308, 648, 825, 939
BmrFI	CCNGG	2 cut(s)	216, 310
BmsI	GCATC	2 cut(s)	59, 862
BpiI	GAAGAC	1 cut(s)	783
BpmI	CTGGAG	3 cut(s)	55, 310, 705
BpuEI	CTTGAG	1 cut(s)	123
BpuMI	CCSGG	2 cut(s)	216, 310
BsaI	GGTCTC	1 cut(s)	533
BsaJI	CCNNGG	5 cut(s)	25, 178, 308, 376, 773
BsaXI	ACNNNNNCTCC	4 cut(s)	453, 483, 793, 823
Bse118I	RCCGGY	1 cut(s)	303
Bse1I	ACTGG	2 cut(s)	396, 626
BseDI	CCNNGG	5 cut(s)	25, 178, 308, 376, 773
BseGI	GGATG	1 cut(s)	409
BseMII	CTCAG	1 cut(s)	587
BseNI	ACTGG	2 cut(s)	396, 626
BseRI	GAGGAG	3 cut(s)	461, 816, 912
BseXI	GCAGC	3 cut(s)	421, 487, 891
BsgI	GTGCAG	1 cut(s)	582
Bsh1285I	CGRYCG	1 cut(s)	220
BshFI	GGCC	3 cut(s)	24, 112, 307
BsiEI	CGRYCG	1 cut(s)	220
BsiHKAI	GWGCWC	1 cut(s)	721
BsiSI	CCGG	4 cut(s)	113, 216, 304, 310
BslFI	GGGAC	1 cut(s)	632
BsmAI	GTCTC	4 cut(s)	473, 533, 739, 839
BsmFI	GGGAC	1 cut(s)	632
BsnI	GGCC	3 cut(s)	24, 112, 307
Bso31I	GGTCTC	1 cut(s)	533
Bsp1286I	GDGCHC	2 cut(s)	43, 721
Bsp143I	GATC	4 cut(s)	289, 712, 724, 937
Bsp19I	CCATGG	3 cut(s)	25, 376, 773
BspACI	CCGC	1 cut(s)	72
BspANI	GGCC	3 cut(s)	24, 112, 307
BspCNI	CTCAG	1 cut(s)	586
BspLI	GGNNCC	4 cut(s)	308, 648, 825, 939
BspMAI	CTGCAG	1 cut(s)	739
BspMI	ACCTGC	1 cut(s)	75
BspPI	GGATC	3 cut(s)	284, 932, 945
BspTNI	GGTCTC	1 cut(s)	533
BsrFI	RCCGGY	1 cut(s)	303
BsrI	ACTGG	2 cut(s)	396, 626
BssAI	RCCGGY	1 cut(s)	303
BssECI	CCNNGG	5 cut(s)	25, 178, 308, 376, 773
BssMI	GATC	4 cut(s)	289, 712, 724, 937
BssT1I	CCWWGG	3 cut(s)	25, 376, 773
Bst4CI	ACNGT	1 cut(s)	838
BstAPI	GCANNNNNTGC	2 cut(s)	81, 434
BstC8I	GCNNGC	4 cut(s)	205, 332, 675, 877
BstDEI	CTNAG	2 cut(s)	107, 573
BstDSI	CCRYGG	3 cut(s)	25, 376, 773
BstF5I	GGATG	1 cut(s)	409
BstKTI	GATC	4 cut(s)	292, 715, 727, 940
BstMAI	GTCTC	4 cut(s)	473, 533, 739, 839
BstMBI	GATC	4 cut(s)	289, 712, 724, 937
BstMCI	CGRYCG	1 cut(s)	220
BstMWI	GCNNNNNNNGC	7 cut(s)	30, 81, 434, 443, 670, 888, 911
BstSCI	CCNGG	2 cut(s)	214, 308
BstSFI	CTRYAG	1 cut(s)	735
BstV1I	GCAGC	3 cut(s)	421, 487, 891
BstV2I	GAAGAC	1 cut(s)	783
BstX2I	RGATCY	1 cut(s)	937
BstYI	RGATCY	1 cut(s)	937
BsuRI	GGCC	3 cut(s)	24, 112, 307
BtgI	CCRYGG	3 cut(s)	25, 376, 773
BtsCI	GGATG	1 cut(s)	409
BtsIMutI	CAGTG	2 cut(s)	528, 843
BveI	ACCTGC	1 cut(s)	75
Cac8I	GCNNGC	4 cut(s)	205, 332, 675, 877
CaiI	CAGNNNCTG	1 cut(s)	434
Cfr10I	RCCGGY	1 cut(s)	303
Cfr13I	GGNCC	2 cut(s)	306, 646
CviAII	CATG	6 cut(s)	26, 377, 535, 703, 774, 865
DdeI	CTNAG	2 cut(s)	107, 573
DpnI	GATC	4 cut(s)	291, 714, 726, 939
DpnII	GATC	4 cut(s)	289, 712, 724, 937
EaeI	YGGCCR	1 cut(s)	22
Ecl136II	GAGCTC	1 cut(s)	719
Eco130I	CCWWGG	3 cut(s)	25, 376, 773
Eco24I	GRGCYC	2 cut(s)	43, 721
Eco31I	GGTCTC	1 cut(s)	533
Eco32I	GATATC	1 cut(s)	319
Eco47I	GGWCC	1 cut(s)	646
Eco53kI	GAGCTC	1 cut(s)	719
Eco57I	CTGAAG	2 cut(s)	834, 894
EcoICRI	GAGCTC	1 cut(s)	719
EcoRI	GAATTC	1 cut(s)	556
EcoRV	GATATC	1 cut(s)	319
EcoT14I	CCWWGG	3 cut(s)	25, 376, 773
EcoT38I	GRGCYC	2 cut(s)	43, 721
ErhI	CCWWGG	3 cut(s)	25, 376, 773
FaeI	CATG	6 cut(s)	29, 380, 538, 706, 777, 868
FaiI	YATR	8 cut(s)	27, 119, 378, 536, 704, 775, 866, 894
FaqI	GGGAC	1 cut(s)	632
FatI	CATG	6 cut(s)	25, 376, 534, 702, 773, 864
Fnu4HI	GCNGC	4 cut(s)	73, 435, 501, 880
FokI	GGATG	1 cut(s)	416
FriOI	GRGCYC	2 cut(s)	43, 721
Fsp4HI	GCNGC	4 cut(s)	73, 435, 501, 880
FspBI	CTAG	3 cut(s)	344, 371, 447
GluI	GCNGC	4 cut(s)	73, 435, 501, 880
GsuI	CTGGAG	3 cut(s)	55, 310, 705
HaeIII	GGCC	3 cut(s)	24, 112, 307
HapII	CCGG	4 cut(s)	113, 216, 304, 310
Hin1II	CATG	6 cut(s)	29, 380, 538, 706, 777, 868
HindIII	AAGCTT	1 cut(s)	411
HinfI	GANTC	1 cut(s)	298
HpaII	CCGG	4 cut(s)	113, 216, 304, 310
HphI	GGTGA	3 cut(s)	293, 380, 881
Hpy188I	TCNGA	5 cut(s)	15, 222, 279, 294, 922
Hpy188III	TCNNGA	4 cut(s)	140, 247, 371, 722
HpyAV	CCTTC	3 cut(s)	53, 795, 935
HpyCH4III	ACNGT	1 cut(s)	838
HpyCH4V	TGCA	7 cut(s)	56, 84, 203, 599, 673, 737, 879
HpyF10VI	GCNNNNNNNGC	7 cut(s)	30, 81, 434, 443, 670, 888, 911
HpyF3I	CTNAG	2 cut(s)	107, 573
Hsp92II	CATG	6 cut(s)	29, 380, 538, 706, 777, 868
Kzo9I	GATC	4 cut(s)	289, 712, 724, 937
LmnI	GCTCC	3 cut(s)	497, 724, 829
Lsp1109I	GCAGC	3 cut(s)	421, 487, 891
LweI	GCATC	2 cut(s)	59, 862
MaeI	CTAG	3 cut(s)	344, 371, 447
MaeIII	GTNAC	3 cut(s)	386, 832, 838
MalI	GATC	4 cut(s)	291, 714, 726, 939
MboI	GATC	4 cut(s)	289, 712, 724, 937
MboII	GAAGA	6 cut(s)	155, 158, 274, 313, 332, 783
MfeI	CAATTG	1 cut(s)	198
MflI	RGATCY	1 cut(s)	937
MhlI	GDGCHC	2 cut(s)	43, 721
MlsI	TGGCCA	1 cut(s)	24
MluNI	TGGCCA	1 cut(s)	24
MlyI	GAGTC	1 cut(s)	292
MmeI	TCCRAC	2 cut(s)	200, 707
MnlI	CCTC	7 cut(s)	119, 188, 345, 482, 837, 890, 928
Mox20I	TGGCCA	1 cut(s)	24
MscI	TGGCCA	1 cut(s)	24
MseI	TTAA	4 cut(s)	89, 162, 546, 961
MslI	CAYNNNNRTG	1 cut(s)	533
Msp20I	TGGCCA	1 cut(s)	24
MspA1I	CMGCKG	1 cut(s)	577
MspI	CCGG	4 cut(s)	113, 216, 304, 310
MspR9I	CCNGG	2 cut(s)	216, 310
MunI	CAATTG	1 cut(s)	198
MwoI	GCNNNNNNNGC	7 cut(s)	30, 81, 434, 443, 670, 888, 911
NciI	CCSGG	2 cut(s)	216, 310
NcoI	CCATGG	3 cut(s)	25, 376, 773
NdeII	GATC	4 cut(s)	289, 712, 724, 937
NlaIII	CATG	6 cut(s)	29, 380, 538, 706, 777, 868
NlaIV	GGNNCC	4 cut(s)	308, 648, 825, 939
NmeAIII	GCCGAG	1 cut(s)	159
NmuCI	GTSAC	3 cut(s)	386, 832, 838
PkrI	GCNGC	4 cut(s)	74, 436, 502, 881
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
PshBI	ATTAAT	1 cut(s)	546
Psp124BI	GAGCTC	1 cut(s)	721
PspN4I	GGNNCC	4 cut(s)	308, 648, 825, 939
PspPI	GGNCC	2 cut(s)	306, 646
PstI	CTGCAG	1 cut(s)	739
PstNI	CAGNNNCTG	1 cut(s)	434
PsuI	RGATCY	1 cut(s)	937
PvuII	CAGCTG	1 cut(s)	577
RseI	CAYNNNNRTG	1 cut(s)	533
SacI	GAGCTC	1 cut(s)	721
SaqAI	TTAA	4 cut(s)	89, 162, 546, 961
SatI	GCNGC	4 cut(s)	73, 435, 501, 880
Sau3AI	GATC	4 cut(s)	289, 712, 724, 937
Sau96I	GGNCC	2 cut(s)	306, 646
SchI	GAGTC	1 cut(s)	292
ScrFI	CCNGG	2 cut(s)	216, 310
SduI	GDGCHC	2 cut(s)	43, 721
SfaNI	GCATC	2 cut(s)	59, 862
SfcI	CTRYAG	1 cut(s)	735
SinI	GGWCC	1 cut(s)	646
SmiMI	CAYNNNNRTG	1 cut(s)	533
SmlI	CTYRAG	1 cut(s)	138
SmoI	CTYRAG	1 cut(s)	138
SsiI	CCGC	1 cut(s)	72
SspI	AATATT	1 cut(s)	781
SspMI	CTAG	3 cut(s)	344, 371, 447
SstI	GAGCTC	1 cut(s)	721
StyD4I	CCNGG	2 cut(s)	214, 308
StyI	CCWWGG	3 cut(s)	25, 376, 773
TaaI	ACNGT	1 cut(s)	838
TaqI	TCGA	1 cut(s)	715
TaqII	GACCGA	1 cut(s)	634
TauI	GCSGC	1 cut(s)	75
Tru1I	TTAA	4 cut(s)	89, 162, 546, 961
Tru9I	TTAA	4 cut(s)	89, 162, 546, 961
TscAI	CASTG	2 cut(s)	535, 843
TseFI	GTSAC	3 cut(s)	386, 832, 838
TseI	GCWGC	3 cut(s)	434, 500, 879
Tsp45I	GTSAC	3 cut(s)	386, 832, 838
TspDTI	ATGAA	5 cut(s)	17, 246, 420, 558, 768
TspGWI	ACGGA	1 cut(s)	163
TspRI	CASTG	2 cut(s)	535, 843
VpaK11BI	GGWCC	1 cut(s)	646
VspI	ATTAAT	1 cut(s)	546
XapI	RAATTY	2 cut(s)	241, 556
XbaI	TCTAGA	1 cut(s)	370
XcmI	CCANNNNNNNNNTGG	1 cut(s)	771
XspI	CTAG	3 cut(s)	344, 371, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.