Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010772

Physical Location & Seq

Genomic Coordinates Forward (+)

26068112 .. 26069652

Gene Structure 1541 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G65230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGGAAGATCTCCTAGCTCAGATGAAACTGGTCTGAAGAAAGGTCCATGGTTGCCTGAAGAAGATGATAAACTGATCAATTATATTCACAAACATGGCCATAGCAGCTGGAGTGCCCTTCCCAAGCTCGCTGGTCTTAACAGGTGTGGGAAGAGTTGCAGGCTACGATGGACAAACTATTTGAGACCAGACATTAAGCGAGGAAAATTCTCTGCGGAGGAAGAAGAGACCATCCTGAACCTTCATGCGGTTCTAGGCAACAAGTGGTCAATGATTGCAAGCCACTTACCTGGACGAACTGACAATGAGATCAAGAATTTCTGGAATACTCATTTGAAGAAAAAGCTGATTCAGATGGGTTTTGACCCCATGACCCATCAGCCAAGAACCGATGATATCTTCTCAAGTTTATCTCAGCTCATGTCTCTGTCTAACCTAAGAGGACTTGTTGATCTGCAGCAACAGTTTCCAATGGAAGACCAAGCGCTACTTAATCTCCAAACTGAGATGGCTAAGCTCCAATTGTTCCAATACCTTCTTCAACCTTCTCCTGCTCCCATGAGTATCAACAACATTAACCCTAACATTCTCAATCTCCTCATCAAAGAAAACTCCGTTACCAGTAATATCGACCTCGGTTTCCTCTCCTCTCATCTTCAAGACTTCAACAACAACAACCTCCCTTCCCTCAAAACCCTAGACGATAATCACTTCAGTCAAAACACTTCTCCAATATGGCTCCATGAACCACCGAGCTTGAACCAAACTATGTTGCCTACGCATGATCCTTGTGCTCAGAGTGTAGATGGTTTCGGCAGCAACCAAGCCTCCTCAAGCCATGATCAAGAAGTAGCAGTCACAGACTCTGTAGATTGGCCTGATCATCATCTATTTGATGATTCCATGTTTCCAGACATTTCTTATCAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

310

Amino Acids

35.14

Weight (kDa)

5.63

Isoelectric Point (pI)

56.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	6.1e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 77	1e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	1.9e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 116	1.3e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0010772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10280 AT5G65230
fragaria_vesca	FvH4_1g20680
malus_domestica	MD01G1031700.v1.1 MD15G1323500.v1.1
prunus_persica	Prupe.6G188300_v2.0.a1
pyrus_communis	pycom01g05920 pycom15g28470
rosa_chinensis	RchiOBHm_Chr2g0113131
rosa_laevigata	RLG00000018046 RLG00000018792
rosa_multiflora	Rmu_sc0005949.1_g000025
rosa_roxburghii	Rroxscaffold_2G00129590 Rroxscaffold_2G00129720
rosa_rugosa	Rorug02G0185700
rosa_samantha	Rh2AG240000 Rh2BG253900 Rh2CG244000 Rh2DG247900
rosa_wichuraiana	Rw2G018780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	215, 248
AclWI	GGATC	1 cut(s)	779
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	2 cut(s)	206, 316
AcuI	CTGAAG	3 cut(s)	56, 78, 697
AfeI	AGCGCT	1 cut(s)	486
AfiI	CCNNNNNNNGG	1 cut(s)	247
AgsI	TTSAA	5 cut(s)	337, 542, 659, 667, 760
AjnI	CCWGG	1 cut(s)	289
AjuI	GAANNNNNNNTTGG	2 cut(s)	522, 554
AluBI	AGCT	7 cut(s)	18, 108, 127, 346, 418, 517, 756
AluI	AGCT	7 cut(s)	18, 108, 127, 346, 418, 517, 756
Alw21I	GWGCWC	1 cut(s)	796
Alw26I	GTCTC	3 cut(s)	178, 221, 429
AlwI	GGATC	1 cut(s)	779
AlwNI	CAGNNNCTG	1 cut(s)	866
Aor51HI	AGCGCT	1 cut(s)	486
AoxI	GGCC	2 cut(s)	97, 875
ApeKI	GCWGC	3 cut(s)	105, 457, 816
ApoI	RAATTY	2 cut(s)	206, 316
ArsI	GACNNNNNNTTYG	2 cut(s)	163, 195
AspLEI	GCGC	1 cut(s)	487
AspS9I	GGNCC	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	44
BaeGI	GKGCMC	1 cut(s)	118
BalI	TGGCCA	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	483
Bbv12I	GWGCWC	1 cut(s)	796
BbvI	GCAGC	3 cut(s)	117, 469, 828
BccI	CCATC	6 cut(s)	162, 239, 349, 384, 502, 800
BciT130I	CCWGG	1 cut(s)	291
BclI	TGATCA	3 cut(s)	75, 841, 880
BcoDI	GTCTC	3 cut(s)	178, 221, 429
BfaI	CTAG	3 cut(s)	15, 254, 698
BfmI	CTRYAG	2 cut(s)	455, 867
BfoI	RGCGCY	1 cut(s)	488
BglII	AGATCT	1 cut(s)	8
BisI	GCNGC	3 cut(s)	106, 458, 817
BlpI	GCTNAGC	1 cut(s)	513
BlsI	GCNGC	3 cut(s)	107, 459, 818
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	1 cut(s)	740
BmrFI	CCNGG	1 cut(s)	291
BpiI	GAAGAC	1 cut(s)	483
BpmI	CTGGAG	1 cut(s)	130
Bpu1102I	GCTNAGC	1 cut(s)	513
BpuEI	CTTGAG	2 cut(s)	388, 817
BsaBI	GATNNNNATC	1 cut(s)	885
BsaI	GGTCTC	2 cut(s)	178, 221
BsaJI	CCNNGG	2 cut(s)	47, 634
BsaXI	ACNNNNNCTCC	4 cut(s)	480, 510, 812, 842
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse1I	ACTGG	2 cut(s)	34, 621
Bse8I	GATNNNNATC	1 cut(s)	885
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	2 cut(s)	47, 634
BseGI	GGATG	1 cut(s)	231
BseJI	GATNNNNATC	1 cut(s)	885
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseMII	CTCAG	4 cut(s)	33, 428, 495, 809
BseNI	ACTGG	2 cut(s)	34, 621
BseRI	GAGGAG	3 cut(s)	587, 637, 820
BseSI	GKGCMC	1 cut(s)	118
BseXI	GCAGC	3 cut(s)	117, 469, 828
BshFI	GGCC	2 cut(s)	99, 877
BsiHKAI	GWGCWC	1 cut(s)	796
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmAI	GTCTC	3 cut(s)	178, 221, 429
BsnI	GGCC	2 cut(s)	99, 877
Bso31I	GGTCTC	2 cut(s)	178, 221
Bsp1286I	GDGCHC	2 cut(s)	118, 796
Bsp143I	GATC	7 cut(s)	8, 75, 309, 451, 784, 841, 880
Bsp1720I	GCTNAGC	1 cut(s)	513
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	2 cut(s)	215, 248
BspANI	GGCC	2 cut(s)	99, 877
BspCNI	CTCAG	4 cut(s)	32, 427, 496, 808
BspLI	GGNNCC	1 cut(s)	740
BspMAI	CTGCAG	1 cut(s)	459
BspPI	GGATC	1 cut(s)	779
BspTNI	GGTCTC	2 cut(s)	178, 221
BsrI	ACTGG	2 cut(s)	34, 621
BssECI	CCNNGG	2 cut(s)	47, 634
BssMI	GATC	7 cut(s)	8, 75, 309, 451, 784, 841, 880
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	465
Bst6I	CTCTTC	2 cut(s)	146, 219
BstC8I	GCNNGC	3 cut(s)	129, 161, 280
BstDEI	CTNAG	6 cut(s)	19, 414, 437, 504, 513, 795
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	231
BstH2I	RGCGCY	1 cut(s)	488
BstHHI	GCGC	1 cut(s)	487
BstKTI	GATC	7 cut(s)	11, 78, 312, 454, 787, 844, 883
BstMAI	GTCTC	3 cut(s)	178, 221, 429
BstMBI	GATC	7 cut(s)	8, 75, 309, 451, 784, 841, 880
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	2 cut(s)	455, 867
BstSLI	GKGCMC	1 cut(s)	118
BstV1I	GCAGC	3 cut(s)	117, 469, 828
BstV2I	GAAGAC	1 cut(s)	483
BstX2I	RGATCY	1 cut(s)	8
BstXI	CCANNNNNNTGG	1 cut(s)	290
BstYI	RGATCY	1 cut(s)	8
BsuRI	GGCC	2 cut(s)	99, 877
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	231
Cac8I	GCNNGC	3 cut(s)	129, 161, 280
CaiI	CAGNNNCTG	1 cut(s)	866
CfoI	GCGC	1 cut(s)	487
Cfr13I	GGNCC	1 cut(s)	44
CspCI	CAANNNNNGTGG	2 cut(s)	738, 773
DdeI	CTNAG	6 cut(s)	19, 414, 437, 504, 513, 795
DpnI	GATC	7 cut(s)	10, 77, 311, 453, 786, 843, 882
DpnII	GATC	7 cut(s)	8, 75, 309, 451, 784, 841, 880
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	2 cut(s)	146, 219
EarI	CTCTTC	2 cut(s)	146, 219
Eco130I	CCWWGG	1 cut(s)	47
Eco31I	GGTCTC	2 cut(s)	178, 221
Eco32I	GATATC	1 cut(s)	397
Eco47I	GGWCC	1 cut(s)	44
Eco47III	AGCGCT	1 cut(s)	486
Eco57I	CTGAAG	3 cut(s)	56, 78, 697
EcoRII	CCWGG	1 cut(s)	289
EcoRV	GATATC	1 cut(s)	397
EcoT14I	CCWWGG	1 cut(s)	47
ErhI	CCWWGG	1 cut(s)	47
FalI	AAGNNNNNCTT	2 cut(s)	474, 506
FbaI	TGATCA	3 cut(s)	75, 841, 880
Fnu4HI	GCNGC	3 cut(s)	106, 458, 817
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	3 cut(s)	106, 458, 817
FspBI	CTAG	3 cut(s)	15, 254, 698
GlaI	GCGC	1 cut(s)	486
GluI	GCNGC	3 cut(s)	106, 458, 817
GsuI	CTGGAG	1 cut(s)	130
HaeII	RGCGCY	1 cut(s)	488
HaeIII	GGCC	2 cut(s)	99, 877
HhaI	GCGC	1 cut(s)	487
Hin6I	GCGC	1 cut(s)	485
HinP1I	GCGC	1 cut(s)	485
HinfI	GANTC	3 cut(s)	349, 863, 899
Hpy188I	TCNGA	4 cut(s)	22, 36, 354, 798
Hpy188III	TCNNGA	6 cut(s)	235, 313, 322, 659, 845, 911
HpyAV	CCTTC	5 cut(s)	128, 251, 545, 555, 693
HpyCH4III	ACNGT	1 cut(s)	465
HpyCH4V	TGCA	3 cut(s)	159, 278, 457
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	6 cut(s)	19, 414, 437, 504, 513, 795
HspAI	GCGC	1 cut(s)	485
Ksp22I	TGATCA	3 cut(s)	75, 841, 880
Kzo9I	GATC	7 cut(s)	8, 75, 309, 451, 784, 841, 880
LmnI	GCTCC	3 cut(s)	522, 559, 744
Lsp1109I	GCAGC	3 cut(s)	117, 469, 828
MaeI	CTAG	3 cut(s)	15, 254, 698
MaeIII	GTNAC	2 cut(s)	616, 856
MalI	GATC	7 cut(s)	10, 77, 311, 453, 786, 843, 882
MboI	GATC	7 cut(s)	8, 75, 309, 451, 784, 841, 880
MfeI	CAATTG	1 cut(s)	521
MflI	RGATCY	1 cut(s)	8
MhlI	GDGCHC	2 cut(s)	118, 796
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	4 cut(s)	79, 206, 316, 521
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	1 cut(s)	857
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	5 cut(s)	138, 195, 492, 576, 931
MslI	CAYNNNNRTG	1 cut(s)	93
Msp20I	TGGCCA	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	108
MspR9I	CCNGG	1 cut(s)	291
MunI	CAATTG	1 cut(s)	521
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	105
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	7 cut(s)	8, 75, 309, 451, 784, 841, 880
NlaIV	GGNNCC	1 cut(s)	740
NmuCI	GTSAC	1 cut(s)	856
PfeI	GAWTC	2 cut(s)	349, 899
PkrI	GCNGC	3 cut(s)	107, 459, 818
PleI	GAGTC	1 cut(s)	857
PpsI	GAGTC	1 cut(s)	857
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	740
PspPI	GGNCC	1 cut(s)	44
PstI	CTGCAG	1 cut(s)	459
PstNI	CAGNNNCTG	1 cut(s)	866
PsuI	RGATCY	1 cut(s)	8
PvuII	CAGCTG	1 cut(s)	108
RseI	CAYNNNNRTG	1 cut(s)	93
SaqAI	TTAA	5 cut(s)	138, 195, 492, 576, 931
SatI	GCNGC	3 cut(s)	106, 458, 817
Sau3AI	GATC	7 cut(s)	8, 75, 309, 451, 784, 841, 880
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	1 cut(s)	857
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	2 cut(s)	118, 796
SfcI	CTRYAG	2 cut(s)	455, 867
SinI	GGWCC	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	93
SmlI	CTYRAG	2 cut(s)	403, 832
SmoI	CTYRAG	2 cut(s)	403, 832
Sse9I	AATT	4 cut(s)	79, 206, 316, 521
SsiI	CCGC	2 cut(s)	215, 248
SspMI	CTAG	3 cut(s)	15, 254, 698
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	1 cut(s)	465
TaqI	TCGA	1 cut(s)	630
TasI	AATT	4 cut(s)	79, 206, 316, 521
TfiI	GAWTC	2 cut(s)	349, 899
Tru1I	TTAA	5 cut(s)	138, 195, 492, 576, 931
Tru9I	TTAA	5 cut(s)	138, 195, 492, 576, 931
TseFI	GTSAC	1 cut(s)	856
TseI	GCWGC	3 cut(s)	105, 457, 816
Tsp45I	GTSAC	1 cut(s)	856
TspDTI	ATGAA	3 cut(s)	39, 233, 759
TspGWI	ACGGA	1 cut(s)	604
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	2 cut(s)	206, 316
XspI	CTAG	3 cut(s)	15, 254, 698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.