Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004663

Physical Location & Seq

Genomic Coordinates Reverse (-)

3652714 .. 3654202

Gene Structure 1489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G11440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAAGCCAGGAGCATTTGCATTGAATCCACATGCAGCATCGTATGTACCAATCTCCAAAAGAGTGGATTATGGTGGCGGTGATGATGGTTTGGTGTTTGCAGCAAAGTCCCCCACGGTTGAAGTGTCAATGCCGAAGAAATCCTCTGAAATGGCTTATAAGCAGATCAGGGATGATGATTTGGATTTGGAGATGGATATAGACATGGATATTGAATACCTTCTTGTCACTTTCTCTGGTCTCTCACAAGAGTCTATCACTGATGTTTACCTCGCTAATGGCGGTGATCTTGAAGCAACCATTGAGATGCTGAATCAGCTTGAGATATACAGCACTGAATCTGAAGAAAACCTGCCAGAGACACTTGATATTGGGGATATCTCTGAGTCAGGGCCTTCAACATCAAAATCTACTGAAGTCGCTGCATCCACATCATCGGTTATCCCTAATGCACCTGTATCGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

155

Amino Acids

16.56

Weight (kDa)

4.05

Isoelectric Point (pI)

49.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004663)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11440 AT5G11440 AT5G25540 AT5G25540 AT5G25540
fragaria_vesca	FvH4_2g30160 FvH4_2g30160 FvH4_2g30160 FvH4_2g30160 FvH4_2g30160
malus_domestica	MD08G1136600.v1.1
prunus_persica	Prupe.1G466700_v2.0.a1 Prupe.1G466700_v2.0.a1 Prupe.1G466700_v2.0.a1 Prupe.1G466700_v2.0.a1
pyrus_communis	pycom08g11540 pycom15g10400 pycom15g10410
rosa_chinensis	RchiOBHm_Chr6g0312751
rosa_laevigata	RLG00000010301
rosa_multiflora	Rmu_ssc0000412.1_g000014
rosa_roxburghii	Rroxscaffold_7G00156530
rosa_rugosa	Rorug06G0399200 Rorug06G0399300 Rorug06G0399400 Rorug06G0399500
rosa_samantha	Rh6AG516300 Rh6BG527600 Rh6CG532500 Rh6DG518600
rosa_wichuraiana	Rw6G044860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	159
Acc36I	ACCTGC	1 cut(s)	360
AciI	CCGC	2 cut(s)	78, 282
AcuI	CTGAAG	2 cut(s)	363, 435
AfaI	GTAC	1 cut(s)	48
AgsI	TTSAA	5 cut(s)	25, 122, 215, 293, 399
AjnI	CCWGG	1 cut(s)	7
AluBI	AGCT	1 cut(s)	319
AluI	AGCT	1 cut(s)	319
Alw26I	GTCTC	2 cut(s)	245, 353
AoxI	GGCC	2 cut(s)	392, 462
ApeKI	GCWGC	3 cut(s)	35, 101, 422
Asp700I	GAANNNNTTC	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	392
AsuHPI	GGTGA	2 cut(s)	92, 296
BbvI	GCAGC	3 cut(s)	47, 113, 409
BccI	CCATC	2 cut(s)	80, 187
BcgI	CGANNNNNNTGC	1 cut(s)	441
BciT130I	CCWGG	1 cut(s)	9
BcoDI	GTCTC	2 cut(s)	245, 353
BfuAI	ACCTGC	1 cut(s)	360
BisI	GCNGC	3 cut(s)	36, 102, 423
BlsI	GCNGC	3 cut(s)	37, 103, 424
Bme1390I	CCNGG	1 cut(s)	9
BmgT120I	GGNCC	1 cut(s)	392
BmrFI	CCNGG	1 cut(s)	9
BmsI	GCATC	3 cut(s)	47, 297, 434
BpuEI	CTTGAG	1 cut(s)	341
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	9
BseDI	CCNNGG	1 cut(s)	114
BseGI	GGATG	2 cut(s)	178, 425
BseMII	CTCAG	1 cut(s)	375
BseXI	GCAGC	3 cut(s)	47, 113, 409
BshFI	GGCC	2 cut(s)	394, 464
BslFI	GGGAC	1 cut(s)	94
BsmAI	GTCTC	2 cut(s)	245, 353
BsmFI	GGGAC	1 cut(s)	94
BsnI	GGCC	2 cut(s)	394, 464
Bso31I	GGTCTC	1 cut(s)	245
Bsp143I	GATC	2 cut(s)	165, 286
BspACI	CCGC	2 cut(s)	78, 282
BspANI	GGCC	2 cut(s)	394, 464
BspCNI	CTCAG	1 cut(s)	376
BspMI	ACCTGC	1 cut(s)	360
BspTNI	GGTCTC	1 cut(s)	245
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	2 cut(s)	165, 286
Bst2UI	CCWGG	1 cut(s)	9
Bst4CI	ACNGT	1 cut(s)	118
BstDEI	CTNAG	1 cut(s)	384
BstDSI	CCRYGG	1 cut(s)	114
BstF5I	GGATG	2 cut(s)	178, 425
BstKTI	GATC	2 cut(s)	168, 289
BstMAI	GTCTC	2 cut(s)	245, 353
BstMBI	GATC	2 cut(s)	165, 286
BstMWI	GCNNNNNNNGC	1 cut(s)	316
BstNI	CCWGG	1 cut(s)	9
BstNSI	RCATGY	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	7
BstV1I	GCAGC	3 cut(s)	47, 113, 409
BstXI	CCANNNNNNTGG	1 cut(s)	64
BsuRI	GGCC	2 cut(s)	394, 464
BtgI	CCRYGG	1 cut(s)	114
BtsCI	GGATG	2 cut(s)	178, 425
BtsIMutI	CAGTG	2 cut(s)	258, 333
BveI	ACCTGC	1 cut(s)	360
Cfr13I	GGNCC	1 cut(s)	392
Csp6I	GTAC	1 cut(s)	47
CviAII	CATG	2 cut(s)	32, 205
CviJI	RGCY	5 cut(s)	7, 155, 319, 394, 464
CviKI_1	RGCY	5 cut(s)	7, 155, 319, 394, 464
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	1 cut(s)	384
DpnI	GATC	2 cut(s)	167, 288
DpnII	GATC	2 cut(s)	165, 286
Eco31I	GGTCTC	1 cut(s)	245
Eco32I	GATATC	1 cut(s)	379
Eco57I	CTGAAG	2 cut(s)	363, 435
EcoO109I	RGGNCCY	1 cut(s)	392
EcoRII	CCWGG	1 cut(s)	7
EcoRV	GATATC	1 cut(s)	379
FaeI	CATG	2 cut(s)	35, 208
FaiI	YATR	7 cut(s)	33, 45, 72, 159, 200, 206, 328
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	2 cut(s)	31, 204
Fnu4HI	GCNGC	3 cut(s)	36, 102, 423
FokI	GGATG	2 cut(s)	185, 412
Fsp4HI	GCNGC	3 cut(s)	36, 102, 423
GluI	GCNGC	3 cut(s)	36, 102, 423
HaeIII	GGCC	2 cut(s)	394, 464
Hin1II	CATG	2 cut(s)	35, 208
HinfI	GANTC	5 cut(s)	25, 251, 313, 338, 386
HphI	GGTGA	2 cut(s)	92, 296
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	3 cut(s)	148, 343, 385
Hpy188III	TCNNGA	1 cut(s)	290
Hpy8I	GTNNAC	1 cut(s)	268
HpyAV	CCTTC	2 cut(s)	230, 405
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4V	TGCA	5 cut(s)	20, 35, 101, 425, 452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	316
HpyF3I	CTNAG	1 cut(s)	384
Hsp92II	CATG	2 cut(s)	35, 208
Kzo9I	GATC	2 cut(s)	165, 286
LmnI	GCTCC	1 cut(s)	11
LpnPI	CCDG	6 cut(s)	21, 154, 222, 365, 369, 375
Lsp1109I	GCAGC	3 cut(s)	47, 113, 409
LweI	GCATC	3 cut(s)	47, 297, 434
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	2 cut(s)	167, 288
MboI	GATC	2 cut(s)	165, 286
MboII	GAAGA	2 cut(s)	148, 356
MlyI	GAGTC	2 cut(s)	260, 395
MnlI	CCTC	2 cut(s)	154, 281
MroXI	GAANNNNTTC	1 cut(s)	219
MslI	CAYNNNNRTG	1 cut(s)	305
MspR9I	CCNGG	1 cut(s)	9
MvaI	CCWGG	1 cut(s)	9
MwoI	GCNNNNNNNGC	1 cut(s)	316
NdeII	GATC	2 cut(s)	165, 286
NlaIII	CATG	2 cut(s)	35, 208
NmuCI	GTSAC	1 cut(s)	226
NspI	RCATGY	1 cut(s)	35
PdmI	GAANNNNTTC	1 cut(s)	219
PfeI	GAWTC	3 cut(s)	25, 313, 338
PkrI	GCNGC	3 cut(s)	37, 103, 424
PleI	GAGTC	2 cut(s)	259, 394
PpsI	GAGTC	2 cut(s)	259, 394
PsiI	TTATAA	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	7
PspPI	GGNCC	1 cut(s)	392
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
RseI	CAYNNNNRTG	1 cut(s)	305
SatI	GCNGC	3 cut(s)	36, 102, 423
Sau3AI	GATC	2 cut(s)	165, 286
Sau96I	GGNCC	1 cut(s)	392
SchI	GAGTC	2 cut(s)	260, 395
ScrFI	CCNGG	1 cut(s)	9
SetI	ASST	5 cut(s)	222, 273, 321, 354, 457
SfaNI	GCATC	3 cut(s)	47, 297, 434
SmiMI	CAYNNNNRTG	1 cut(s)	305
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
SsiI	CCGC	2 cut(s)	78, 282
StyD4I	CCNGG	1 cut(s)	7
TaaI	ACNGT	1 cut(s)	118
TfiI	GAWTC	3 cut(s)	25, 313, 338
TscAI	CASTG	2 cut(s)	265, 340
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	3 cut(s)	35, 101, 422
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	265, 340
XceI	RCATGY	1 cut(s)	35
XmnI	GAANNNNTTC	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.