Rh6BG527600

Polyadenylate-binding protein-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0004663
Physical Location & Seq
Forward (+)
71888088 .. 71891411
3324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG527600.1

Sequence Viewer

Length: 573 bp
ATGAAGCCAGGAGTATCTTCTTTGAATCCATATGCAGCAGCATACATTCCCCTCTCCAAAAGGGAGGCAGATGTTACAACTTTTGTGACATCAAAAGAATCTAGCCGCAACAATGATCCAGTCTGGTTTGGGGCCCCTCAGAATATGACCCACAATCAAAACCATAGCAAAGCTTATCTTGGATCTGATTCCCCTGCTACTGCAGCACTTCTCAGTCCAAAGGCGTTTGCTCTAAACAACTACCCTGCCCATGGTTCTTATGGTTCATCGTCACAGAATGTGAATGAAGTGACAGAAAATGAGGAATTTGATATGGATTTGGAATATCTTCAGATGGCATTTCCTGATATATCCGAACAGTCTCTTGCTGATGTTTACTTAGCAAACAAGGGGGACCTGGAAGCTACCATTGACATGCTCAACCAACTTGAGGTATCTTTCATTTTCCATTGGGGAGTTTTTAGTTTTCATATTGGAGGAGAATGTACATTATCCTCCACCAATTGTTCATCTACTGTTATGTCGTTAATACTTAAGGGCTGCTTGCAATGTGGAAACAATGGAATCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CUE

Protein Analysis

190

Amino Acids

20.66

Weight (kDa)

4.64

Isoelectric Point (pI)

49.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CUE PF02845 107 - 142 1.1e-06 CUE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 106
AclWI GGATC 2 cut(s) 110, 190
AcsI RAATTY 1 cut(s) 305
AcuI CTGAAG 1 cut(s) 314
AfaI GTAC 1 cut(s) 487
AfiI CCNNNNNNNGG 2 cut(s) 251, 430
AflII CTTAAG 1 cut(s) 533
AgsI TTSAA 1 cut(s) 25
AjnI CCWGG 2 cut(s) 7, 396
AluBI AGCT 2 cut(s) 173, 404
AluI AGCT 2 cut(s) 173, 404
Alw26I GTCTC 1 cut(s) 366
AlwI GGATC 2 cut(s) 110, 190
AoxI GGCC 1 cut(s) 132
ApaI GGGCCC 1 cut(s) 136
ApeKI GCWGC 4 cut(s) 35, 38, 203, 540
ApoI RAATTY 1 cut(s) 305
Asp700I GAANNNNTTC 1 cut(s) 327
AspS9I GGNCC 3 cut(s) 132, 133, 394
AvaII GGWCC 1 cut(s) 394
BaeGI GKGCMC 1 cut(s) 136
BanII GRGCYC 1 cut(s) 136
BbvI GCAGC 4 cut(s) 47, 50, 215, 527
BccI CCATC 1 cut(s) 328
BciT130I CCWGG 2 cut(s) 9, 398
BcoDI GTCTC 1 cut(s) 366
BfaI CTAG 1 cut(s) 102
BfmI CTRYAG 1 cut(s) 201
BfrI CTTAAG 1 cut(s) 533
BisI GCNGC 5 cut(s) 36, 39, 106, 204, 541
BlsI GCNGC 5 cut(s) 37, 40, 107, 205, 542
Bme1390I CCNGG 2 cut(s) 9, 398
Bme18I GGWCC 1 cut(s) 394
BmgT120I GGNCC 3 cut(s) 132, 133, 394
BmiI GGNNCC 4 cut(s) 133, 134, 135, 395
BmrFI CCNGG 2 cut(s) 9, 398
BpuEI CTTGAG 1 cut(s) 449
BsaJI CCNNGG 1 cut(s) 250
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 430
Bse1I ACTGG 1 cut(s) 119
Bse3DI GCAATG 1 cut(s) 554
BseBI CCWGG 2 cut(s) 9, 398
BseDI CCNNGG 1 cut(s) 250
BseLI CCNNNNNNNGG 2 cut(s) 251, 430
BseMI GCAATG 1 cut(s) 554
BseMII CTCAG 2 cut(s) 152, 226
BseNI ACTGG 1 cut(s) 119
BseRI GAGGAG 1 cut(s) 492
BseSI GKGCMC 1 cut(s) 136
BseXI GCAGC 4 cut(s) 47, 50, 215, 527
BshFI GGCC 1 cut(s) 134
BslFI GGGAC 1 cut(s) 407
BslI CCNNNNNNNGG 2 cut(s) 251, 430
BsmAI GTCTC 1 cut(s) 366
BsmFI GGGAC 1 cut(s) 407
BsnI GGCC 1 cut(s) 134
Bsp120I GGGCCC 1 cut(s) 132
Bsp1286I GDGCHC 1 cut(s) 136
Bsp1407I TGTACA 1 cut(s) 485
Bsp143I GATC 2 cut(s) 115, 182
Bsp19I CCATGG 1 cut(s) 250
BspACI CCGC 1 cut(s) 106
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 2 cut(s) 151, 225
BspLI GGNNCC 4 cut(s) 133, 134, 135, 395
BspMAI CTGCAG 1 cut(s) 205
BspPI GGATC 2 cut(s) 110, 190
BspTI CTTAAG 1 cut(s) 533
BsrDI GCAATG 1 cut(s) 554
BsrGI TGTACA 1 cut(s) 485
BsrI ACTGG 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 2 cut(s) 115, 182
BssT1I CCWWGG 1 cut(s) 250
Bst2UI CCWGG 2 cut(s) 9, 398
Bst4CI ACNGT 2 cut(s) 360, 517
BstAFI CTTAAG 1 cut(s) 533
BstAUI TGTACA 1 cut(s) 485
BstC8I GCNNGC 1 cut(s) 545
BstDEI CTNAG 3 cut(s) 138, 212, 379
BstDSI CCRYGG 1 cut(s) 250
BstKTI GATC 2 cut(s) 118, 185
BstMAI GTCTC 1 cut(s) 366
BstMBI GATC 2 cut(s) 115, 182
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstNI CCWGG 2 cut(s) 9, 398
BstNSI RCATGY 1 cut(s) 418
BstSCI CCNGG 2 cut(s) 7, 396
BstSFI CTRYAG 1 cut(s) 201
BstSLI GKGCMC 1 cut(s) 136
BstV1I GCAGC 4 cut(s) 47, 50, 215, 527
BstX2I RGATCY 1 cut(s) 182
BstYI RGATCY 1 cut(s) 182
BsuRI GGCC 1 cut(s) 134
BtgI CCRYGG 1 cut(s) 250
Cac8I GCNNGC 1 cut(s) 545
Cfr13I GGNCC 3 cut(s) 132, 133, 394
Csp6I GTAC 1 cut(s) 486
CviAII CATG 2 cut(s) 251, 415
CviJI RGCY 6 cut(s) 7, 105, 134, 173, 404, 540
CviKI_1 RGCY 6 cut(s) 7, 105, 134, 173, 404, 540
CviQI GTAC 1 cut(s) 486
DdeI CTNAG 3 cut(s) 138, 212, 379
DpnI GATC 2 cut(s) 117, 184
DpnII GATC 2 cut(s) 115, 182
Eco130I CCWWGG 1 cut(s) 250
Eco24I GRGCYC 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 394
Eco57I CTGAAG 1 cut(s) 314
EcoO109I RGGNCCY 3 cut(s) 132, 133, 394
EcoRII CCWGG 2 cut(s) 7, 396
EcoT14I CCWWGG 1 cut(s) 250
EcoT38I GRGCYC 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 2 cut(s) 254, 418
FalI AAGNNNNNCTT 4 cut(s) 162, 194, 527, 559
FaqI GGGAC 1 cut(s) 407
FatI CATG 2 cut(s) 250, 414
FauNDI CATATG 1 cut(s) 31
Fnu4HI GCNGC 5 cut(s) 36, 39, 106, 204, 541
FriOI GRGCYC 1 cut(s) 136
Fsp4HI GCNGC 5 cut(s) 36, 39, 106, 204, 541
FspBI CTAG 1 cut(s) 102
GluI GCNGC 5 cut(s) 36, 39, 106, 204, 541
HaeIII GGCC 1 cut(s) 134
Hin1II CATG 2 cut(s) 254, 418
HindIII AAGCTT 1 cut(s) 171
HinfI GANTC 4 cut(s) 25, 98, 188, 564
Hpy166II GTNNAC 1 cut(s) 376
Hpy188I TCNGA 4 cut(s) 141, 187, 333, 355
Hpy188III TCNNGA 1 cut(s) 344
Hpy8I GTNNAC 1 cut(s) 376
HpyCH4III ACNGT 2 cut(s) 360, 517
HpyCH4V TGCA 3 cut(s) 35, 203, 547
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 3 cut(s) 138, 212, 379
Hsp92II CATG 2 cut(s) 254, 418
Kzo9I GATC 2 cut(s) 115, 182
LpnPI CCDG 8 cut(s) 21, 109, 132, 207, 258, 357, 383, 410
Lsp1109I GCAGC 4 cut(s) 47, 50, 215, 527
MaeI CTAG 1 cut(s) 102
MaeIII GTNAC 4 cut(s) 73, 85, 270, 289
MalI GATC 2 cut(s) 117, 184
MboI GATC 2 cut(s) 115, 182
MboII GAAGA 2 cut(s) 9, 320
MfeI CAATTG 1 cut(s) 502
MflI RGATCY 1 cut(s) 182
MhlI GDGCHC 1 cut(s) 136
MluCI AATT 2 cut(s) 305, 502
MnlI CCTC 7 cut(s) 58, 62, 147, 295, 424, 470, 505
MroXI GAANNNNTTC 1 cut(s) 327
MseI TTAA 2 cut(s) 527, 534
MslI CAYNNNNRTG 1 cut(s) 413
MspCI CTTAAG 1 cut(s) 533
MspR9I CCNGG 2 cut(s) 9, 398
MunI CAATTG 1 cut(s) 502
MvaI CCWGG 2 cut(s) 9, 398
MwoI GCNNNNNNNGC 1 cut(s) 203
NcoI CCATGG 1 cut(s) 250
NdeI CATATG 1 cut(s) 31
NdeII GATC 2 cut(s) 115, 182
NlaIII CATG 2 cut(s) 254, 418
NlaIV GGNNCC 4 cut(s) 133, 134, 135, 395
NmuCI GTSAC 3 cut(s) 85, 270, 289
NspI RCATGY 1 cut(s) 418
PdmI GAANNNNTTC 1 cut(s) 327
PfeI GAWTC 4 cut(s) 25, 98, 188, 564
PkrI GCNGC 5 cut(s) 37, 40, 107, 205, 542
PpuMI RGGWCCY 1 cut(s) 394
Psp5II RGGWCCY 1 cut(s) 394
Psp6I CCWGG 2 cut(s) 7, 396
PspGI CCWGG 2 cut(s) 7, 396
PspN4I GGNNCC 4 cut(s) 133, 134, 135, 395
PspOMI GGGCCC 1 cut(s) 132
PspPI GGNCC 3 cut(s) 132, 133, 394
PspPPI RGGWCCY 1 cut(s) 394
PstI CTGCAG 1 cut(s) 205
PsuI RGATCY 1 cut(s) 182
RsaI GTAC 1 cut(s) 487
RsaNI GTAC 1 cut(s) 486
RseI CAYNNNNRTG 1 cut(s) 413
SaqAI TTAA 2 cut(s) 527, 534
SatI GCNGC 5 cut(s) 36, 39, 106, 204, 541
Sau3AI GATC 2 cut(s) 115, 182
Sau96I GGNCC 3 cut(s) 132, 133, 394
ScrFI CCNGG 2 cut(s) 9, 398
SduI GDGCHC 1 cut(s) 136
SetI ASST 4 cut(s) 175, 399, 406, 435
SfcI CTRYAG 1 cut(s) 201
SinI GGWCC 1 cut(s) 394
SmiMI CAYNNNNRTG 1 cut(s) 413
SmlI CTYRAG 2 cut(s) 428, 533
SmoI CTYRAG 2 cut(s) 428, 533
Sse9I AATT 2 cut(s) 305, 502
SsiI CCGC 1 cut(s) 106
SspMI CTAG 1 cut(s) 102
StyD4I CCNGG 2 cut(s) 7, 396
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 2 cut(s) 360, 517
TasI AATT 2 cut(s) 305, 502
TatI WGTACW 1 cut(s) 485
TauI GCSGC 1 cut(s) 108
TfiI GAWTC 4 cut(s) 25, 98, 188, 564
Tru1I TTAA 2 cut(s) 527, 534
Tru9I TTAA 2 cut(s) 527, 534
TseFI GTSAC 3 cut(s) 85, 270, 289
TseI GCWGC 4 cut(s) 35, 38, 203, 540
Tsp45I GTSAC 3 cut(s) 85, 270, 289
TspDTI ATGAA 6 cut(s) 17, 255, 300, 430, 458, 498
Vha464I CTTAAG 1 cut(s) 533
VpaK11BI GGWCC 1 cut(s) 394
XapI RAATTY 1 cut(s) 305
XceI RCATGY 1 cut(s) 418
XcmI CCANNNNNNNNNTGG 1 cut(s) 257
XmnI GAANNNNTTC 1 cut(s) 327
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.