RchiOBHm_Chr6g0312751

Polyadenylate-binding protein-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0004663
Physical Location & Seq
Forward (+)
69318530 .. 69322064
3535 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28136

Sequence Viewer

Length: 570 bp
ATGAAGCCGGGAGTATCTTCTTTGAATCCATATGCAGCAGCATACATTCCCCTCTCCAAAAGGGAGGCAGATGATAGAACTTTTGTGACATCCAAAGAATCTAGCCGCACCAATGATCCACTCTGGTTTGGGGCCCCTCAGAATATGACCCACAATCAAAACCATAGCAAAGCTTATCTTGGATCTGATTCCCCTGCTACTGCTGCACTTCTCAGTCCAAAGGCGTTTGCTCTAAACAACTACCCTGCCCATGGTTCTTATGGTTCATCGTCACAGAATGTGAATGAAGTGACAGCAAATGAGGAATTTGATATGGATTTGGAATATCTTCAGATGGCATTTCCTGGTATATCTGATCAGTCTCTTGCTGATGTTTACTTGGCGAACAAGGGGGACCTGGAAGCTACCATTGACATGCTGAACCAACTTGAGTTCTACACAGTCGAGTCTTCTGAAAGTCTTCCAGACACTTTGGACATTGGAGATGTTTCTGAATCTGGGTTGTCACCAAATTCTGCATGGAAACTGAAGAATGTAGCAGGTGAAGCCAGTGGTTCACCCAAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CUE

Protein Analysis

189

Amino Acids

20.35

Weight (kDa)

4.43

Isoelectric Point (pI)

45.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CUE PF02845 107 - 142 1e-05 CUE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 530
Acc36I ACCTGC 1 cut(s) 530
AciI CCGC 1 cut(s) 106
AclWI GGATC 2 cut(s) 110, 190
AcsI RAATTY 2 cut(s) 305, 511
AcuI CTGAAG 2 cut(s) 314, 548
AfiI CCNNNNNNNGG 1 cut(s) 251
AgsI TTSAA 1 cut(s) 25
AjnI CCWGG 2 cut(s) 343, 396
AluBI AGCT 2 cut(s) 173, 404
AluI AGCT 2 cut(s) 173, 404
Alw26I GTCTC 1 cut(s) 366
AlwI GGATC 2 cut(s) 110, 190
AoxI GGCC 1 cut(s) 132
ApaI GGGCCC 1 cut(s) 136
ApeKI GCWGC 3 cut(s) 35, 38, 203
ApoI RAATTY 2 cut(s) 305, 511
Asp700I GAANNNNTTC 2 cut(s) 327, 459
AspS9I GGNCC 3 cut(s) 132, 133, 394
AsuC2I CCSGG 1 cut(s) 9
AsuHPI GGTGA 3 cut(s) 498, 549, 554
AvaII GGWCC 1 cut(s) 394
BaeGI GKGCMC 1 cut(s) 136
BanII GRGCYC 1 cut(s) 136
BbsI GAAGAC 2 cut(s) 441, 452
BbvI GCAGC 3 cut(s) 47, 50, 190
BccI CCATC 1 cut(s) 328
BciT130I CCWGG 2 cut(s) 345, 398
BclI TGATCA 1 cut(s) 355
BcnI CCSGG 1 cut(s) 9
BcoDI GTCTC 1 cut(s) 366
BfaI CTAG 1 cut(s) 102
BfuAI ACCTGC 1 cut(s) 530
BisI GCNGC 4 cut(s) 36, 39, 106, 204
BlsI GCNGC 4 cut(s) 37, 40, 107, 205
Bme1390I CCNGG 3 cut(s) 9, 345, 398
Bme18I GGWCC 1 cut(s) 394
BmgT120I GGNCC 3 cut(s) 132, 133, 394
BmiI GGNNCC 4 cut(s) 133, 134, 135, 395
BmrFI CCNGG 3 cut(s) 9, 345, 398
BpiI GAAGAC 2 cut(s) 441, 452
BpuEI CTTGAG 1 cut(s) 449
BpuMI CCSGG 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 250
Bsc4I CCNNNNNNNGG 1 cut(s) 251
Bse1I ACTGG 1 cut(s) 549
BseBI CCWGG 2 cut(s) 345, 398
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 251
BseMII CTCAG 2 cut(s) 152, 226
BseNI ACTGG 1 cut(s) 549
BseSI GKGCMC 1 cut(s) 136
BseXI GCAGC 3 cut(s) 47, 50, 190
BsgI GTGCAG 1 cut(s) 189
BshFI GGCC 1 cut(s) 134
BsiSI CCGG 1 cut(s) 8
BslFI GGGAC 1 cut(s) 407
BslI CCNNNNNNNGG 1 cut(s) 251
BsmAI GTCTC 1 cut(s) 366
BsmFI GGGAC 1 cut(s) 407
BsnI GGCC 1 cut(s) 134
Bsp120I GGGCCC 1 cut(s) 132
Bsp1286I GDGCHC 1 cut(s) 136
Bsp143I GATC 3 cut(s) 115, 182, 355
Bsp19I CCATGG 1 cut(s) 250
BspACI CCGC 1 cut(s) 106
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 2 cut(s) 151, 225
BspLI GGNNCC 4 cut(s) 133, 134, 135, 395
BspMI ACCTGC 1 cut(s) 530
BspPI GGATC 2 cut(s) 110, 190
BsrI ACTGG 1 cut(s) 549
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 3 cut(s) 115, 182, 355
BssT1I CCWWGG 1 cut(s) 250
Bst2UI CCWGG 2 cut(s) 345, 398
Bst4CI ACNGT 1 cut(s) 442
BstDEI CTNAG 3 cut(s) 138, 212, 567
BstDSI CCRYGG 1 cut(s) 250
BstF5I GGATG 1 cut(s) 89
BstKTI GATC 3 cut(s) 118, 185, 358
BstMAI GTCTC 1 cut(s) 366
BstMBI GATC 3 cut(s) 115, 182, 355
BstMWI GCNNNNNNNGC 2 cut(s) 203, 545
BstNI CCWGG 2 cut(s) 345, 398
BstNSI RCATGY 1 cut(s) 418
BstSCI CCNGG 3 cut(s) 7, 343, 396
BstSLI GKGCMC 1 cut(s) 136
BstV1I GCAGC 3 cut(s) 47, 50, 190
BstV2I GAAGAC 2 cut(s) 441, 452
BstX2I RGATCY 1 cut(s) 182
BstYI RGATCY 1 cut(s) 182
BsuRI GGCC 1 cut(s) 134
BtgI CCRYGG 1 cut(s) 250
BtsCI GGATG 1 cut(s) 89
BtsIMutI CAGTG 1 cut(s) 556
BveI ACCTGC 1 cut(s) 530
Cfr13I GGNCC 3 cut(s) 132, 133, 394
CviAII CATG 3 cut(s) 251, 415, 519
CviJI RGCY 6 cut(s) 7, 105, 134, 173, 404, 548
CviKI_1 RGCY 6 cut(s) 7, 105, 134, 173, 404, 548
DdeI CTNAG 3 cut(s) 138, 212, 567
DpnI GATC 3 cut(s) 117, 184, 357
DpnII GATC 3 cut(s) 115, 182, 355
Eco130I CCWWGG 1 cut(s) 250
Eco24I GRGCYC 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 394
Eco57I CTGAAG 2 cut(s) 314, 548
EcoO109I RGGNCCY 3 cut(s) 132, 133, 394
EcoRII CCWGG 2 cut(s) 343, 396
EcoT14I CCWWGG 1 cut(s) 250
EcoT38I GRGCYC 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 3 cut(s) 254, 418, 522
FalI AAGNNNNNCTT 2 cut(s) 162, 194
FaqI GGGAC 1 cut(s) 407
FatI CATG 3 cut(s) 250, 414, 518
FauNDI CATATG 1 cut(s) 31
FbaI TGATCA 1 cut(s) 355
Fnu4HI GCNGC 4 cut(s) 36, 39, 106, 204
FokI GGATG 1 cut(s) 76
FriOI GRGCYC 1 cut(s) 136
Fsp4HI GCNGC 4 cut(s) 36, 39, 106, 204
FspBI CTAG 1 cut(s) 102
GluI GCNGC 4 cut(s) 36, 39, 106, 204
HaeIII GGCC 1 cut(s) 134
HapII CCGG 1 cut(s) 8
Hin1II CATG 3 cut(s) 254, 418, 522
HindIII AAGCTT 1 cut(s) 171
HinfI GANTC 5 cut(s) 25, 98, 188, 446, 494
HpaII CCGG 1 cut(s) 8
HphI GGTGA 3 cut(s) 498, 549, 554
Hpy166II GTNNAC 2 cut(s) 376, 557
Hpy188I TCNGA 6 cut(s) 141, 187, 333, 355, 454, 493
Hpy188III TCNNGA 1 cut(s) 464
Hpy8I GTNNAC 2 cut(s) 376, 557
HpyCH4III ACNGT 1 cut(s) 442
HpyCH4V TGCA 3 cut(s) 35, 206, 518
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 545
HpyF3I CTNAG 3 cut(s) 138, 212, 567
Hsp92II CATG 3 cut(s) 254, 418, 522
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 3 cut(s) 115, 182, 355
Lsp1109I GCAGC 3 cut(s) 47, 50, 190
MaeI CTAG 1 cut(s) 102
MaeIII GTNAC 4 cut(s) 85, 270, 289, 504
MalI GATC 3 cut(s) 117, 184, 357
MboI GATC 3 cut(s) 115, 182, 355
MboII GAAGA 5 cut(s) 9, 320, 441, 452, 541
MflI RGATCY 1 cut(s) 182
MhlI GDGCHC 1 cut(s) 136
MluCI AATT 2 cut(s) 305, 511
MlyI GAGTC 1 cut(s) 455
MnlI CCTC 4 cut(s) 58, 62, 147, 295
MroXI GAANNNNTTC 2 cut(s) 327, 459
MslI CAYNNNNRTG 1 cut(s) 413
MspI CCGG 1 cut(s) 8
MspR9I CCNGG 3 cut(s) 9, 345, 398
MvaI CCWGG 2 cut(s) 345, 398
MwoI GCNNNNNNNGC 2 cut(s) 203, 545
NciI CCSGG 1 cut(s) 9
NcoI CCATGG 1 cut(s) 250
NdeI CATATG 1 cut(s) 31
NdeII GATC 3 cut(s) 115, 182, 355
NlaIII CATG 3 cut(s) 254, 418, 522
NlaIV GGNNCC 4 cut(s) 133, 134, 135, 395
NmuCI GTSAC 4 cut(s) 85, 270, 289, 504
NspI RCATGY 1 cut(s) 418
PaqCI CACCTGC 1 cut(s) 530
PdmI GAANNNNTTC 2 cut(s) 327, 459
PfeI GAWTC 4 cut(s) 25, 98, 188, 494
PkrI GCNGC 4 cut(s) 37, 40, 107, 205
PleI GAGTC 1 cut(s) 454
PpsI GAGTC 1 cut(s) 454
PpuMI RGGWCCY 1 cut(s) 394
Psp5II RGGWCCY 1 cut(s) 394
Psp6I CCWGG 2 cut(s) 343, 396
PspGI CCWGG 2 cut(s) 343, 396
PspN4I GGNNCC 4 cut(s) 133, 134, 135, 395
PspOMI GGGCCC 1 cut(s) 132
PspPI GGNCC 3 cut(s) 132, 133, 394
PspPPI RGGWCCY 1 cut(s) 394
PsuI RGATCY 1 cut(s) 182
RseI CAYNNNNRTG 1 cut(s) 413
SatI GCNGC 4 cut(s) 36, 39, 106, 204
Sau3AI GATC 3 cut(s) 115, 182, 355
Sau96I GGNCC 3 cut(s) 132, 133, 394
SchI GAGTC 1 cut(s) 455
ScrFI CCNGG 3 cut(s) 9, 345, 398
SduI GDGCHC 1 cut(s) 136
SetI ASST 4 cut(s) 175, 399, 406, 544
SinI GGWCC 1 cut(s) 394
SmiMI CAYNNNNRTG 1 cut(s) 413
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
Sse9I AATT 2 cut(s) 305, 511
SsiI CCGC 1 cut(s) 106
SspMI CTAG 1 cut(s) 102
StyD4I CCNGG 3 cut(s) 7, 343, 396
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 1 cut(s) 442
TaqI TCGA 1 cut(s) 444
TasI AATT 2 cut(s) 305, 511
TauI GCSGC 1 cut(s) 108
TfiI GAWTC 4 cut(s) 25, 98, 188, 494
TscAI CASTG 1 cut(s) 556
TseFI GTSAC 4 cut(s) 85, 270, 289, 504
TseI GCWGC 3 cut(s) 35, 38, 203
Tsp45I GTSAC 4 cut(s) 85, 270, 289, 504
TspDTI ATGAA 3 cut(s) 17, 255, 300
TspRI CASTG 1 cut(s) 556
VpaK11BI GGWCC 1 cut(s) 394
XapI RAATTY 2 cut(s) 305, 511
XceI RCATGY 1 cut(s) 418
XcmI CCANNNNNNNNNTGG 2 cut(s) 257, 516
XmnI GAANNNNTTC 2 cut(s) 327, 459
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.