Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004663

Physical Location & Seq

Genomic Coordinates Forward (+)

38911932 .. 38914683

Gene Structure 2752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G466700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGAAGCCAGGATTGTCTTCTTTGAATCCCTATGCAGCAGCATACATTCCACTCTCCAAAAGGGAGACGGATGATAGAATGTATGTGACGACGAAAGATTCTAGCCGCAGCAATGAGGCAGTCTGGTTTGGGACCCCACAGAATAACTCCCAGAATCAACCGCATAGCAAATCTTATCTTGAATCTGATGCCCCTGGTACTGCAAGACTCCCCAGTCCAAAGTCATTTGCTGTAAAGAGCTACCCTGCCCACGGTTCTTATGGTTCATCTTCACAGAATGTGAATGAAGTGACAGCACATGAAGATTTTGATATGGCTTTGGATTATCTTGAGATGACATTTCCTGGTATATCTGATCAGTCCCTTACTGATGTTTATTTGGCAAATAAGGGTGACCTGGATGCCACCATTGACATGCTGAACCAACTTGAGTTCTACACAGTTGAGTCTTCTGAAAGTCTTCCAGACACTTTGGACATTGGAGATGTTTCTGAATCTGGGTTGCCAGGCAATAGTGCATGGAAACTGAAGAATGTAGCAGGTGAAGCCAGCGGTTCACCCAAATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

190

Amino Acids

20.46

Weight (kDa)

4.51

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004663)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11440 AT5G11440 AT5G25540 AT5G25540 AT5G25540
fragaria_vesca	FvH4_2g30160 FvH4_2g30160 FvH4_2g30160 FvH4_2g30160 FvH4_2g30160
malus_domestica	MD08G1136600.v1.1
prunus_persica	Prupe.1G466700_v2.0.a1 Prupe.1G466700_v2.0.a1 Prupe.1G466700_v2.0.a1 Prupe.1G466700_v2.0.a1
pyrus_communis	pycom08g11540 pycom15g10400 pycom15g10410
rosa_chinensis	RchiOBHm_Chr6g0312751
rosa_laevigata	RLG00000010301
rosa_multiflora	Rmu_ssc0000412.1_g000014
rosa_roxburghii	Rroxscaffold_7G00156530
rosa_rugosa	Rorug06G0399200 Rorug06G0399300 Rorug06G0399400 Rorug06G0399500
rosa_samantha	Rh6AG516300 Rh6BG527600 Rh6CG532500 Rh6DG518600
rosa_wichuraiana	Rw6G044860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	530
AasI	GACNNNNNNGTC	1 cut(s)	213
Acc36I	ACCTGC	1 cut(s)	530
AciI	CCGC	3 cut(s)	106, 161, 552
AcuI	CTGAAG	1 cut(s)	548
AfaI	GTAC	1 cut(s)	199
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgsI	TTSAA	2 cut(s)	25, 182
AjnI	CCWGG	5 cut(s)	7, 193, 343, 396, 505
AluBI	AGCT	1 cut(s)	240
AluI	AGCT	1 cut(s)	240
Alw26I	GTCTC	1 cut(s)	59
ApeKI	GCWGC	3 cut(s)	35, 38, 108
Asp700I	GAANNNNTTC	1 cut(s)	459
AspS9I	GGNCC	1 cut(s)	132
AsuHPI	GGTGA	3 cut(s)	404, 549, 554
AvaII	GGWCC	1 cut(s)	132
BbsI	GAAGAC	3 cut(s)	9, 441, 452
BbvI	GCAGC	3 cut(s)	47, 50, 120
BciT130I	CCWGG	5 cut(s)	9, 195, 345, 398, 507
BclI	TGATCA	1 cut(s)	355
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	1 cut(s)	102
BfuAI	ACCTGC	1 cut(s)	530
BisI	GCNGC	4 cut(s)	36, 39, 106, 109
BlsI	GCNGC	4 cut(s)	37, 40, 107, 110
Bme1390I	CCNGG	5 cut(s)	9, 195, 345, 398, 507
Bme18I	GGWCC	1 cut(s)	132
BmgT120I	GGNCC	1 cut(s)	132
BmiI	GGNNCC	2 cut(s)	133, 134
BmrFI	CCNGG	5 cut(s)	9, 195, 345, 398, 507
BmrI	ACTGGG	1 cut(s)	207
BmsI	GCATC	2 cut(s)	178, 391
BmuI	ACTGGG	1 cut(s)	207
BpiI	GAAGAC	3 cut(s)	9, 441, 452
BpuEI	CTTGAG	2 cut(s)	350, 449
BsaJI	CCNNGG	2 cut(s)	193, 250
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	1 cut(s)	213
Bse3DI	GCAATG	1 cut(s)	118
BseBI	CCWGG	5 cut(s)	9, 195, 345, 398, 507
BseDI	CCNNGG	2 cut(s)	193, 250
BseGI	GGATG	2 cut(s)	76, 406
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMI	GCAATG	1 cut(s)	118
BseNI	ACTGG	1 cut(s)	213
BseXI	GCAGC	3 cut(s)	47, 50, 120
BslFI	GGGAC	2 cut(s)	145, 346
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	59
BsmBI	CGTCTC	1 cut(s)	59
BsmFI	GGGAC	2 cut(s)	145, 346
Bsp143I	GATC	1 cut(s)	355
BspACI	CCGC	3 cut(s)	106, 161, 552
BspLI	GGNNCC	2 cut(s)	133, 134
BspMI	ACCTGC	1 cut(s)	530
BsrDI	GCAATG	1 cut(s)	118
BsrI	ACTGG	1 cut(s)	213
BssECI	CCNNGG	2 cut(s)	193, 250
BssMI	GATC	1 cut(s)	355
Bst2UI	CCWGG	5 cut(s)	9, 195, 345, 398, 507
Bst4CI	ACNGT	2 cut(s)	254, 442
BstC8I	GCNNGC	1 cut(s)	550
BstDSI	CCRYGG	1 cut(s)	250
BstEII	GGTNACC	1 cut(s)	392
BstF5I	GGATG	2 cut(s)	76, 406
BstKTI	GATC	1 cut(s)	358
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	1 cut(s)	355
BstMWI	GCNNNNNNNGC	1 cut(s)	545
BstNI	CCWGG	5 cut(s)	9, 195, 345, 398, 507
BstNSI	RCATGY	1 cut(s)	418
BstPI	GGTNACC	1 cut(s)	392
BstSCI	CCNGG	5 cut(s)	7, 193, 343, 396, 505
BstV1I	GCAGC	3 cut(s)	47, 50, 120
BstV2I	GAAGAC	3 cut(s)	9, 441, 452
BtgI	CCRYGG	1 cut(s)	250
BtsCI	GGATG	2 cut(s)	76, 406
BveI	ACCTGC	1 cut(s)	530
Cac8I	GCNNGC	1 cut(s)	550
Cfr13I	GGNCC	1 cut(s)	132
Csp6I	GTAC	1 cut(s)	198
CviAII	CATG	3 cut(s)	299, 415, 519
CviJI	RGCY	5 cut(s)	7, 105, 240, 317, 548
CviKI_1	RGCY	5 cut(s)	7, 105, 240, 317, 548
CviQI	GTAC	1 cut(s)	198
DpnI	GATC	1 cut(s)	357
DpnII	GATC	1 cut(s)	355
DrdI	GACNNNNNNGTC	1 cut(s)	213
DseDI	GACNNNNNNGTC	1 cut(s)	213
Eco47I	GGWCC	1 cut(s)	132
Eco57I	CTGAAG	1 cut(s)	548
Eco91I	GGTNACC	1 cut(s)	392
EcoO109I	RGGNCCY	1 cut(s)	132
EcoO65I	GGTNACC	1 cut(s)	392
EcoRII	CCWGG	5 cut(s)	7, 193, 343, 396, 505
Esp3I	CGTCTC	1 cut(s)	59
FaeI	CATG	3 cut(s)	302, 418, 522
FaqI	GGGAC	2 cut(s)	145, 346
FatI	CATG	3 cut(s)	298, 414, 518
FbaI	TGATCA	1 cut(s)	355
Fnu4HI	GCNGC	4 cut(s)	36, 39, 106, 109
FokI	GGATG	2 cut(s)	83, 413
Fsp4HI	GCNGC	4 cut(s)	36, 39, 106, 109
FspBI	CTAG	1 cut(s)	102
GluI	GCNGC	4 cut(s)	36, 39, 106, 109
Hin1II	CATG	3 cut(s)	302, 418, 522
HinfI	GANTC	7 cut(s)	25, 98, 154, 182, 207, 446, 494
HphI	GGTGA	3 cut(s)	404, 549, 554
Hpy166II	GTNNAC	1 cut(s)	557
Hpy188I	TCNGA	4 cut(s)	187, 355, 454, 493
Hpy188III	TCNNGA	3 cut(s)	179, 329, 464
Hpy8I	GTNNAC	1 cut(s)	557
Hpy99I	CGWCG	1 cut(s)	94
HpyCH4III	ACNGT	2 cut(s)	254, 442
HpyCH4V	TGCA	3 cut(s)	35, 203, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	545
Hsp92II	CATG	3 cut(s)	302, 418, 522
KflI	GGGWCCC	1 cut(s)	132
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	1 cut(s)	355
Lsp1109I	GCAGC	3 cut(s)	47, 50, 120
LweI	GCATC	2 cut(s)	178, 391
MaeI	CTAG	1 cut(s)	102
MaeIII	GTNAC	3 cut(s)	85, 289, 392
MalI	GATC	1 cut(s)	357
MboI	GATC	1 cut(s)	355
MboII	GAAGA	6 cut(s)	9, 261, 314, 441, 452, 541
MlyI	GAGTC	2 cut(s)	201, 455
MnlI	CCTC	1 cut(s)	109
MroXI	GAANNNNTTC	1 cut(s)	459
MslI	CAYNNNNRTG	1 cut(s)	413
MspA1I	CMGCKG	1 cut(s)	552
MspR9I	CCNGG	5 cut(s)	9, 195, 345, 398, 507
MvaI	CCWGG	5 cut(s)	9, 195, 345, 398, 507
MwoI	GCNNNNNNNGC	1 cut(s)	545
NdeII	GATC	1 cut(s)	355
NlaIII	CATG	3 cut(s)	302, 418, 522
NlaIV	GGNNCC	2 cut(s)	133, 134
NmuCI	GTSAC	3 cut(s)	85, 289, 392
NspI	RCATGY	1 cut(s)	418
PaqCI	CACCTGC	1 cut(s)	530
PdmI	GAANNNNTTC	1 cut(s)	459
PfeI	GAWTC	5 cut(s)	25, 98, 154, 182, 494
PkrI	GCNGC	4 cut(s)	37, 40, 107, 110
PleI	GAGTC	2 cut(s)	201, 454
PpsI	GAGTC	2 cut(s)	201, 454
PpuMI	RGGWCCY	1 cut(s)	132
Psp5II	RGGWCCY	1 cut(s)	132
Psp6I	CCWGG	5 cut(s)	7, 193, 343, 396, 505
PspEI	GGTNACC	1 cut(s)	392
PspGI	CCWGG	5 cut(s)	7, 193, 343, 396, 505
PspN4I	GGNNCC	2 cut(s)	133, 134
PspPI	GGNCC	1 cut(s)	132
PspPPI	RGGWCCY	1 cut(s)	132
RsaI	GTAC	1 cut(s)	199
RsaNI	GTAC	1 cut(s)	198
RseI	CAYNNNNRTG	1 cut(s)	413
SatI	GCNGC	4 cut(s)	36, 39, 106, 109
Sau3AI	GATC	1 cut(s)	355
Sau96I	GGNCC	1 cut(s)	132
SchI	GAGTC	2 cut(s)	201, 455
ScrFI	CCNGG	5 cut(s)	9, 195, 345, 398, 507
SetI	ASST	3 cut(s)	242, 399, 544
SfaNI	GCATC	2 cut(s)	178, 391
SinI	GGWCC	1 cut(s)	132
SmiMI	CAYNNNNRTG	1 cut(s)	413
SmlI	CTYRAG	2 cut(s)	329, 428
SmoI	CTYRAG	2 cut(s)	329, 428
SsiI	CCGC	3 cut(s)	106, 161, 552
SspMI	CTAG	1 cut(s)	102
StyD4I	CCNGG	5 cut(s)	7, 193, 343, 396, 505
TaaI	ACNGT	2 cut(s)	254, 442
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	5 cut(s)	25, 98, 154, 182, 494
TseFI	GTSAC	3 cut(s)	85, 289, 392
TseI	GCWGC	3 cut(s)	35, 38, 108
Tsp45I	GTSAC	3 cut(s)	85, 289, 392
TspDTI	ATGAA	4 cut(s)	17, 255, 300, 315
TspGWI	ACGGA	1 cut(s)	83
VpaK11BI	GGWCC	1 cut(s)	132
XceI	RCATGY	1 cut(s)	418
XcmI	CCANNNNNNNNNTGG	1 cut(s)	257
XmnI	GAANNNNTTC	1 cut(s)	459
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.