Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004663

Physical Location & Seq

Genomic Coordinates Forward (+)

54407129 .. 54407488

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0399300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCAGCCGGGAATGAAGAGTGGAGGAAAACGGCAGACACTCACAAAATGAGTCCAGAGGAAGTGAAAAGGGCAGGAGTGGAGGGATCAAAAAGGCCACCTGGCCATAACCCTGGGGGTGTTCTTCACCAGAGGCGCAACCTTCCTATTAGCCCCACAGGGATGCTCCTCGGTGGCTTCCTCATCTGCACCACCATAGGCTACTTCACCCTCTACGCCATGAAAAAACCCGAAGCCTCTGCACGAGATGTTGCCAGGGTTTCCACCAATATCGCCGACCCTGAGGACACAAAACCCAGGCCGGGTGACACAGTGCCCACGCCAGGCCGGAAGGGAACTAGTAGTAGCGCTGTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

119

Amino Acids

12.75

Weight (kDa)

9.66

Isoelectric Point (pI)

59.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004663)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11440 AT5G11440 AT5G25540 AT5G25540 AT5G25540
fragaria_vesca	FvH4_2g30160 FvH4_2g30160 FvH4_2g30160 FvH4_2g30160 FvH4_2g30160
malus_domestica	MD08G1136600.v1.1
prunus_persica	Prupe.1G466700_v2.0.a1 Prupe.1G466700_v2.0.a1 Prupe.1G466700_v2.0.a1 Prupe.1G466700_v2.0.a1
pyrus_communis	pycom08g11540 pycom15g10400 pycom15g10410
rosa_chinensis	RchiOBHm_Chr6g0312751
rosa_laevigata	RLG00000010301
rosa_multiflora	Rmu_ssc0000412.1_g000014
rosa_roxburghii	Rroxscaffold_7G00156530
rosa_rugosa	Rorug06G0399200 Rorug06G0399300 Rorug06G0399400 Rorug06G0399500
rosa_samantha	Rh6AG516300 Rh6BG527600 Rh6CG532500 Rh6DG518600
rosa_wichuraiana	Rw6G044860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	94
AcoI	YGGCCR	1 cut(s)	103
AfeI	AGCGCT	1 cut(s)	349
AfiI	CCNNNNNNNGG	2 cut(s)	302, 323
AhlI	ACTAGT	1 cut(s)	338
AjnI	CCWGG	5 cut(s)	100, 112, 254, 296, 322
AlwI	GGATC	1 cut(s)	94
Aor51HI	AGCGCT	1 cut(s)	349
AoxI	GGCC	4 cut(s)	95, 103, 299, 325
ApeKI	GCWGC	1 cut(s)	5
AspLEI	GCGC	2 cut(s)	138, 350
AsuC2I	CCSGG	2 cut(s)	10, 303
AsuHPI	GGTGA	3 cut(s)	119, 199, 317
AxyI	CCTNAGG	1 cut(s)	282
BaeGI	GKGCMC	1 cut(s)	318
BalI	TGGCCA	1 cut(s)	105
BauI	CACGAG	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	17
BceAI	ACGGC	1 cut(s)	48
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BciT130I	CCWGG	5 cut(s)	102, 114, 256, 298, 324
BcnI	CCSGG	2 cut(s)	10, 303
BcuI	ACTAGT	1 cut(s)	338
BfaI	CTAG	1 cut(s)	339
BfoI	RGCGCY	1 cut(s)	351
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	7 cut(s)	10, 102, 114, 256, 298, 303, 324
BmrFI	CCNGG	7 cut(s)	10, 102, 114, 256, 298, 303, 324
BmsI	GCATC	1 cut(s)	153
BpuMI	CCSGG	2 cut(s)	10, 303
BsaJI	CCNNGG	5 cut(s)	112, 113, 169, 255, 296
Bsc4I	CCNNNNNNNGG	2 cut(s)	302, 323
Bse21I	CCTNAGG	1 cut(s)	282
BseBI	CCWGG	5 cut(s)	102, 114, 256, 298, 324
BseDI	CCNNGG	5 cut(s)	112, 113, 169, 255, 296
BseGI	GGATG	1 cut(s)	168
BseLI	CCNNNNNNNGG	2 cut(s)	302, 323
BseMII	CTCAG	1 cut(s)	273
BseRI	GAGGAG	1 cut(s)	158
BseSI	GKGCMC	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	17
BsgI	GTGCAG	2 cut(s)	172, 225
BshFI	GGCC	4 cut(s)	97, 105, 301, 327
BsiSI	CCGG	3 cut(s)	9, 302, 328
BslI	CCNNNNNNNGG	2 cut(s)	302, 323
BsnI	GGCC	4 cut(s)	97, 105, 301, 327
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	1 cut(s)	86
BspANI	GGCC	4 cut(s)	97, 105, 301, 327
BspCNI	CTCAG	1 cut(s)	274
BspPI	GGATC	1 cut(s)	94
BssECI	CCNNGG	5 cut(s)	112, 113, 169, 255, 296
BssMI	GATC	1 cut(s)	86
BssSI	CACGAG	1 cut(s)	243
Bst2BI	CACGAG	1 cut(s)	243
Bst2UI	CCWGG	5 cut(s)	102, 114, 256, 298, 324
Bst4CI	ACNGT	1 cut(s)	313
Bst6I	CTCTTC	1 cut(s)	12
BstDEI	CTNAG	1 cut(s)	282
BstF5I	GGATG	1 cut(s)	168
BstH2I	RGCGCY	1 cut(s)	351
BstHHI	GCGC	2 cut(s)	138, 350
BstKTI	GATC	1 cut(s)	89
BstMBI	GATC	1 cut(s)	86
BstNI	CCWGG	5 cut(s)	102, 114, 256, 298, 324
BstSCI	CCNGG	7 cut(s)	8, 100, 112, 254, 296, 301, 322
BstSLI	GKGCMC	1 cut(s)	318
BstV1I	GCAGC	1 cut(s)	17
BstXI	CCANNNNNNTGG	1 cut(s)	113
Bsu36I	CCTNAGG	1 cut(s)	282
BsuRI	GGCC	4 cut(s)	97, 105, 301, 327
BtsCI	GGATG	1 cut(s)	168
BtsIMutI	CAGTG	1 cut(s)	318
CfoI	GCGC	2 cut(s)	138, 350
CviAII	CATG	1 cut(s)	220
CviJI	RGCY	9 cut(s)	8, 97, 105, 153, 177, 201, 236, 301, 327
CviKI_1	RGCY	9 cut(s)	8, 97, 105, 153, 177, 201, 236, 301, 327
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	1 cut(s)	88
DpnII	GATC	1 cut(s)	86
EaeI	YGGCCR	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Eco47III	AGCGCT	1 cut(s)	349
Eco81I	CCTNAGG	1 cut(s)	282
EcoRII	CCWGG	5 cut(s)	100, 112, 254, 296, 322
FaeI	CATG	1 cut(s)	223
FaiI	YATR	3 cut(s)	108, 197, 221
FatI	CATG	1 cut(s)	219
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	175
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	339
GlaI	GCGC	2 cut(s)	137, 349
GluI	GCNGC	1 cut(s)	6
HaeII	RGCGCY	1 cut(s)	351
HaeIII	GGCC	4 cut(s)	97, 105, 301, 327
HapII	CCGG	3 cut(s)	9, 302, 328
HhaI	GCGC	2 cut(s)	138, 350
Hin1II	CATG	1 cut(s)	223
Hin6I	GCGC	2 cut(s)	136, 348
HinP1I	GCGC	2 cut(s)	136, 348
HinfI	GANTC	1 cut(s)	52
HpaII	CCGG	3 cut(s)	9, 302, 328
HphI	GGTGA	3 cut(s)	119, 199, 317
Hpy188III	TCNNGA	1 cut(s)	56
HpyAV	CCTTC	2 cut(s)	152, 325
HpyCH4III	ACNGT	1 cut(s)	313
HpyCH4V	TGCA	2 cut(s)	189, 242
HpyF3I	CTNAG	1 cut(s)	282
Hsp92II	CATG	1 cut(s)	223
HspAI	GCGC	2 cut(s)	136, 348
Kzo9I	GATC	1 cut(s)	86
LmnI	GCTCC	1 cut(s)	171
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	153
MaeI	CTAG	1 cut(s)	339
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	1 cut(s)	88
MboI	GATC	1 cut(s)	86
MboII	GAAGA	2 cut(s)	29, 116
MhlI	GDGCHC	1 cut(s)	318
MlsI	TGGCCA	1 cut(s)	105
MluNI	TGGCCA	1 cut(s)	105
MlyI	GAGTC	1 cut(s)	61
MnlI	CCTC	9 cut(s)	18, 52, 76, 126, 179, 191, 221, 247, 277
Mox20I	TGGCCA	1 cut(s)	105
MscI	TGGCCA	1 cut(s)	105
MslI	CAYNNNNRTG	1 cut(s)	161
Msp20I	TGGCCA	1 cut(s)	105
MspI	CCGG	3 cut(s)	9, 302, 328
MspR9I	CCNGG	7 cut(s)	10, 102, 114, 256, 298, 303, 324
MvaI	CCWGG	5 cut(s)	102, 114, 256, 298, 324
NciI	CCSGG	2 cut(s)	10, 303
NdeII	GATC	1 cut(s)	86
NlaIII	CATG	1 cut(s)	223
NmuCI	GTSAC	1 cut(s)	305
PasI	CCCWGGG	1 cut(s)	113
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
Psp6I	CCWGG	5 cut(s)	100, 112, 254, 296, 322
PspGI	CCWGG	5 cut(s)	100, 112, 254, 296, 322
RseI	CAYNNNNRTG	1 cut(s)	161
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	86
SchI	GAGTC	1 cut(s)	61
ScrFI	CCNGG	7 cut(s)	10, 102, 114, 256, 298, 303, 324
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	2 cut(s)	103, 144
SfaNI	GCATC	1 cut(s)	153
SmiMI	CAYNNNNRTG	1 cut(s)	161
SpeI	ACTAGT	1 cut(s)	338
SspMI	CTAG	1 cut(s)	339
StyD4I	CCNGG	7 cut(s)	8, 100, 112, 254, 296, 301, 322
TaaI	ACNGT	1 cut(s)	313
TscAI	CASTG	1 cut(s)	318
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	2 cut(s)	30, 236
TspRI	CASTG	1 cut(s)	318
XspI	CTAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.