FvH4_2g30160

Polyadenylate-binding protein-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0004663
Physical Location & Seq
Reverse (-)
23329640 .. 23332109
2470 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g30160.t4

Sequence Viewer

Length: 573 bp
ATGAAGCCAGGAGTGTCGTCTTTGAATCCATATGCAGCAGCATACATTCCCCTCTCCAAAAGGGAGGCAGATGATAGACCTTTTGCGACATCAAAAGAATCTAACTGCAACAACGATGCAGTCTGGTTTGGGGCCCCTCATAGTATGAACCAGAATCAAAACCATAGCAAAGCTTATCTTGGATCTGATTCCCCTGGTACTGCAGCACTTCTCAGTCCAAAGGCGTTTGCTCTAAACAACTACCCTCCCCATGGTTCGTATGGTTCATCGTCACAGAAAGTGAATGAAGTGACAGAAAATGAGGAATTTGATATGGATTTGGAGTATCTTCAGATGGCATTTCCTGGTATTTCTGATCAGTCTCTGGCTGATGTTTACTTGGCGAACAAGGGGGACCTGGAAGCAACCATTGACATGCTGAACCAACTTGAGTTCTACACAGTGGAGTCTTCTGAGAGTCTTCCAGACACTTTGGACATCGGAGATGTTTCTGAATCTGGGATGTCACCAAAATCTGCATGGAAACTGAAGACTGTAGCAGCAGGCGAAGCCAGTGGTTCACCCAAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CUE

Protein Analysis

191

Amino Acids

20.43

Weight (kDa)

4.47

Isoelectric Point (pI)

44.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CUE PF02845 107 - 142 6.5e-06 CUE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 190
AcsI RAATTY 1 cut(s) 305
AcuI CTGAAG 2 cut(s) 314, 548
AfaI GTAC 1 cut(s) 199
AfiI CCNNNNNNNGG 1 cut(s) 251
AgsI TTSAA 1 cut(s) 25
AjnI CCWGG 4 cut(s) 7, 193, 343, 396
AluBI AGCT 1 cut(s) 173
AluI AGCT 1 cut(s) 173
Alw26I GTCTC 1 cut(s) 366
AlwI GGATC 1 cut(s) 190
AlwNI CAGNNNCTG 1 cut(s) 364
AoxI GGCC 1 cut(s) 132
ApaI GGGCCC 1 cut(s) 136
ApeKI GCWGC 4 cut(s) 35, 38, 203, 539
ApoI RAATTY 1 cut(s) 305
AspS9I GGNCC 3 cut(s) 132, 133, 394
AsuHPI GGTGA 2 cut(s) 498, 552
AvaII GGWCC 1 cut(s) 394
BaeGI GKGCMC 1 cut(s) 136
BanII GRGCYC 1 cut(s) 136
BbsI GAAGAC 3 cut(s) 441, 452, 536
BbvI GCAGC 4 cut(s) 47, 50, 215, 551
BccI CCATC 1 cut(s) 328
BciT130I CCWGG 4 cut(s) 9, 195, 345, 398
BclI TGATCA 1 cut(s) 355
BcoDI GTCTC 1 cut(s) 366
BfmI CTRYAG 2 cut(s) 201, 534
BisI GCNGC 4 cut(s) 36, 39, 204, 540
BlsI GCNGC 4 cut(s) 37, 40, 205, 541
Bme1390I CCNGG 4 cut(s) 9, 195, 345, 398
Bme18I GGWCC 1 cut(s) 394
BmgT120I GGNCC 3 cut(s) 132, 133, 394
BmiI GGNNCC 4 cut(s) 133, 134, 135, 395
BmrFI CCNGG 4 cut(s) 9, 195, 345, 398
BmsI GCATC 1 cut(s) 106
BpiI GAAGAC 3 cut(s) 441, 452, 536
BpuEI CTTGAG 1 cut(s) 449
BsaJI CCNNGG 2 cut(s) 193, 250
Bsc4I CCNNNNNNNGG 1 cut(s) 251
Bse1I ACTGG 1 cut(s) 552
BseBI CCWGG 4 cut(s) 9, 195, 345, 398
BseDI CCNNGG 2 cut(s) 193, 250
BseGI GGATG 1 cut(s) 507
BseLI CCNNNNNNNGG 1 cut(s) 251
BseMII CTCAG 2 cut(s) 226, 444
BseNI ACTGG 1 cut(s) 552
BseSI GKGCMC 1 cut(s) 136
BseXI GCAGC 4 cut(s) 47, 50, 215, 551
BshFI GGCC 1 cut(s) 134
BslFI GGGAC 1 cut(s) 407
BslI CCNNNNNNNGG 1 cut(s) 251
BsmAI GTCTC 1 cut(s) 366
BsmFI GGGAC 1 cut(s) 407
BsnI GGCC 1 cut(s) 134
Bsp120I GGGCCC 1 cut(s) 132
Bsp1286I GDGCHC 1 cut(s) 136
Bsp143I GATC 2 cut(s) 182, 355
Bsp19I CCATGG 1 cut(s) 250
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 2 cut(s) 225, 445
BspLI GGNNCC 4 cut(s) 133, 134, 135, 395
BspMAI CTGCAG 1 cut(s) 205
BspPI GGATC 1 cut(s) 190
BsrI ACTGG 1 cut(s) 552
BssECI CCNNGG 2 cut(s) 193, 250
BssMI GATC 2 cut(s) 182, 355
BssT1I CCWWGG 1 cut(s) 250
Bst2UI CCWGG 4 cut(s) 9, 195, 345, 398
Bst4CI ACNGT 2 cut(s) 442, 535
BstC8I GCNNGC 1 cut(s) 544
BstDEI CTNAG 3 cut(s) 212, 453, 570
BstDSI CCRYGG 1 cut(s) 250
BstF5I GGATG 1 cut(s) 507
BstKTI GATC 2 cut(s) 185, 358
BstMAI GTCTC 1 cut(s) 366
BstMBI GATC 2 cut(s) 182, 355
BstMWI GCNNNNNNNGC 1 cut(s) 548
BstNI CCWGG 4 cut(s) 9, 195, 345, 398
BstNSI RCATGY 1 cut(s) 418
BstSCI CCNGG 4 cut(s) 7, 193, 343, 396
BstSFI CTRYAG 2 cut(s) 201, 534
BstSLI GKGCMC 1 cut(s) 136
BstV1I GCAGC 4 cut(s) 47, 50, 215, 551
BstV2I GAAGAC 3 cut(s) 441, 452, 536
BstX2I RGATCY 1 cut(s) 182
BstYI RGATCY 1 cut(s) 182
BsuRI GGCC 1 cut(s) 134
BtgI CCRYGG 1 cut(s) 250
BtsCI GGATG 1 cut(s) 507
BtsIMutI CAGTG 2 cut(s) 447, 559
Cac8I GCNNGC 1 cut(s) 544
CaiI CAGNNNCTG 1 cut(s) 364
Cfr13I GGNCC 3 cut(s) 132, 133, 394
Csp6I GTAC 1 cut(s) 198
CviAII CATG 3 cut(s) 251, 415, 519
CviJI RGCY 5 cut(s) 7, 134, 173, 368, 551
CviKI_1 RGCY 5 cut(s) 7, 134, 173, 368, 551
CviQI GTAC 1 cut(s) 198
DdeI CTNAG 3 cut(s) 212, 453, 570
DpnI GATC 2 cut(s) 184, 357
DpnII GATC 2 cut(s) 182, 355
Eco130I CCWWGG 1 cut(s) 250
Eco24I GRGCYC 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 394
Eco57I CTGAAG 2 cut(s) 314, 548
EcoO109I RGGNCCY 3 cut(s) 132, 133, 394
EcoRII CCWGG 4 cut(s) 7, 193, 343, 396
EcoT14I CCWWGG 1 cut(s) 250
EcoT38I GRGCYC 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 3 cut(s) 254, 418, 522
FalI AAGNNNNNCTT 2 cut(s) 162, 194
FaqI GGGAC 1 cut(s) 407
FatI CATG 3 cut(s) 250, 414, 518
FauNDI CATATG 1 cut(s) 31
FbaI TGATCA 1 cut(s) 355
Fnu4HI GCNGC 4 cut(s) 36, 39, 204, 540
FokI GGATG 1 cut(s) 514
FriOI GRGCYC 1 cut(s) 136
Fsp4HI GCNGC 4 cut(s) 36, 39, 204, 540
GluI GCNGC 4 cut(s) 36, 39, 204, 540
HaeIII GGCC 1 cut(s) 134
Hin1II CATG 3 cut(s) 254, 418, 522
HindIII AAGCTT 1 cut(s) 171
HinfI GANTC 7 cut(s) 25, 98, 154, 188, 446, 457, 494
HphI GGTGA 2 cut(s) 498, 552
Hpy166II GTNNAC 2 cut(s) 376, 560
Hpy188I TCNGA 6 cut(s) 187, 333, 355, 454, 482, 493
Hpy188III TCNNGA 1 cut(s) 464
Hpy8I GTNNAC 2 cut(s) 376, 560
HpyCH4III ACNGT 2 cut(s) 442, 535
HpyCH4V TGCA 5 cut(s) 35, 108, 119, 203, 518
HpyF10VI GCNNNNNNNGC 1 cut(s) 548
HpyF3I CTNAG 3 cut(s) 212, 453, 570
Hsp92II CATG 3 cut(s) 254, 418, 522
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 2 cut(s) 182, 355
Lsp1109I GCAGC 4 cut(s) 47, 50, 215, 551
LweI GCATC 1 cut(s) 106
MaeIII GTNAC 3 cut(s) 270, 289, 504
MalI GATC 2 cut(s) 184, 357
MboI GATC 2 cut(s) 182, 355
MboII GAAGA 4 cut(s) 320, 441, 452, 541
MflI RGATCY 1 cut(s) 182
MhlI GDGCHC 1 cut(s) 136
MluCI AATT 1 cut(s) 305
MlyI GAGTC 2 cut(s) 455, 466
MnlI CCTC 5 cut(s) 58, 62, 147, 255, 295
MslI CAYNNNNRTG 1 cut(s) 413
MspR9I CCNGG 4 cut(s) 9, 195, 345, 398
MvaI CCWGG 4 cut(s) 9, 195, 345, 398
MwoI GCNNNNNNNGC 1 cut(s) 548
NcoI CCATGG 1 cut(s) 250
NdeI CATATG 1 cut(s) 31
NdeII GATC 2 cut(s) 182, 355
NlaIII CATG 3 cut(s) 254, 418, 522
NlaIV GGNNCC 4 cut(s) 133, 134, 135, 395
NmuCI GTSAC 3 cut(s) 270, 289, 504
NspI RCATGY 1 cut(s) 418
PfeI GAWTC 5 cut(s) 25, 98, 154, 188, 494
PkrI GCNGC 4 cut(s) 37, 40, 205, 541
PleI GAGTC 2 cut(s) 454, 465
PpsI GAGTC 2 cut(s) 454, 465
PpuMI RGGWCCY 1 cut(s) 394
Psp5II RGGWCCY 1 cut(s) 394
Psp6I CCWGG 4 cut(s) 7, 193, 343, 396
PspGI CCWGG 4 cut(s) 7, 193, 343, 396
PspN4I GGNNCC 4 cut(s) 133, 134, 135, 395
PspOMI GGGCCC 1 cut(s) 132
PspPI GGNCC 3 cut(s) 132, 133, 394
PspPPI RGGWCCY 1 cut(s) 394
PstI CTGCAG 1 cut(s) 205
PstNI CAGNNNCTG 1 cut(s) 364
PsuI RGATCY 1 cut(s) 182
RsaI GTAC 1 cut(s) 199
RsaNI GTAC 1 cut(s) 198
RseI CAYNNNNRTG 1 cut(s) 413
SatI GCNGC 4 cut(s) 36, 39, 204, 540
Sau3AI GATC 2 cut(s) 182, 355
Sau96I GGNCC 3 cut(s) 132, 133, 394
SchI GAGTC 2 cut(s) 455, 466
ScrFI CCNGG 4 cut(s) 9, 195, 345, 398
SduI GDGCHC 1 cut(s) 136
SetI ASST 3 cut(s) 82, 175, 399
SfaNI GCATC 1 cut(s) 106
SfcI CTRYAG 2 cut(s) 201, 534
SinI GGWCC 1 cut(s) 394
SmiMI CAYNNNNRTG 1 cut(s) 413
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
Sse9I AATT 1 cut(s) 305
StyD4I CCNGG 4 cut(s) 7, 193, 343, 396
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 2 cut(s) 442, 535
TasI AATT 1 cut(s) 305
TfiI GAWTC 5 cut(s) 25, 98, 154, 188, 494
TscAI CASTG 2 cut(s) 447, 559
TseFI GTSAC 3 cut(s) 270, 289, 504
TseI GCWGC 4 cut(s) 35, 38, 203, 539
Tsp45I GTSAC 3 cut(s) 270, 289, 504
TspDTI ATGAA 4 cut(s) 17, 161, 255, 300
TspRI CASTG 2 cut(s) 447, 559
VpaK11BI GGWCC 1 cut(s) 394
XapI RAATTY 1 cut(s) 305
XceI RCATGY 1 cut(s) 418
XcmI CCANNNNNNNNNTGG 2 cut(s) 257, 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.