RLG00000010301

Polyadenylate-binding protein-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004663
Physical Location & Seq
Reverse (-)
399339 .. 400475
1137 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010301

Sequence Viewer

Length: 426 bp
ATGACCCACAATCAAAACCATAGCAAAGCTTATCTTGGATCTGATTCCCCTGCTACTGCAGCACTTCTCAGTCCAAAGGCGTTTGCACTAAACAACTACCCTGCCCATGGTTCTTATGGTTCATCGTCACAGAATGTGAATGAAGTGACAGAAAATGAGGAATTTGATATGGATTTGGAATATCTTCAGATGGCATTTCCTGGTATATCCGAACAGTCTCTTGCTGATGTTTACTTGGCGAACAAGGGGGACCTGGAAGCTACCATTGACATGCTGAACCAACTTGAGTTCTACACAGTCGAGTCTACTGAAAGTCTTCCAGACACTTTGGACATTGGTGATGTTTCTGAATCTGGGTTGTCACCAAATTCTGCATGGAAACTGAAGAATGTAGCAGGCGAAGCCACTGGTTCACCCAAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CUE

Protein Analysis

142

Amino Acids

15.15

Weight (kDa)

4.16

Isoelectric Point (pI)

49.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CUE PF02845 59 - 94 5.4e-06 CUE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 305
AclWI GGATC 1 cut(s) 46
AcsI RAATTY 2 cut(s) 161, 367
AcuI CTGAAG 2 cut(s) 170, 404
AfiI CCNNNNNNNGG 1 cut(s) 107
AjnI CCWGG 2 cut(s) 199, 252
AluBI AGCT 2 cut(s) 29, 260
AluI AGCT 2 cut(s) 29, 260
Alw26I GTCTC 1 cut(s) 222
AlwI GGATC 1 cut(s) 46
ApeKI GCWGC 1 cut(s) 59
ApoI RAATTY 2 cut(s) 161, 367
Asp700I GAANNNNTTC 2 cut(s) 183, 315
AspS9I GGNCC 1 cut(s) 250
AsuHPI GGTGA 3 cut(s) 350, 354, 405
AvaII GGWCC 1 cut(s) 250
BbsI GAAGAC 1 cut(s) 308
BbvI GCAGC 1 cut(s) 71
BccI CCATC 1 cut(s) 184
BciT130I CCWGG 2 cut(s) 201, 254
BcoDI GTCTC 1 cut(s) 222
BfmI CTRYAG 1 cut(s) 57
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
Bme1390I CCNGG 2 cut(s) 201, 254
Bme18I GGWCC 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 250
BmiI GGNNCC 1 cut(s) 251
BmrFI CCNGG 2 cut(s) 201, 254
BpiI GAAGAC 1 cut(s) 308
BpuEI CTTGAG 1 cut(s) 305
BsaJI CCNNGG 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse1I ACTGG 1 cut(s) 412
BseBI CCWGG 2 cut(s) 201, 254
BseDI CCNNGG 1 cut(s) 106
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMII CTCAG 1 cut(s) 82
BseNI ACTGG 1 cut(s) 412
BseXI GCAGC 1 cut(s) 71
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 1 cut(s) 107
BsmAI GTCTC 1 cut(s) 222
BsmFI GGGAC 1 cut(s) 263
Bsp143I GATC 1 cut(s) 38
Bsp19I CCATGG 1 cut(s) 106
BspCNI CTCAG 1 cut(s) 81
BspLI GGNNCC 1 cut(s) 251
BspMAI CTGCAG 1 cut(s) 61
BspPI GGATC 1 cut(s) 46
BsrI ACTGG 1 cut(s) 412
BssECI CCNNGG 1 cut(s) 106
BssMI GATC 1 cut(s) 38
BssT1I CCWWGG 1 cut(s) 106
Bst2UI CCWGG 2 cut(s) 201, 254
Bst4CI ACNGT 2 cut(s) 216, 298
BstC8I GCNNGC 1 cut(s) 397
BstDEI CTNAG 2 cut(s) 68, 423
BstDSI CCRYGG 1 cut(s) 106
BstKTI GATC 1 cut(s) 41
BstMAI GTCTC 1 cut(s) 222
BstMBI GATC 1 cut(s) 38
BstMWI GCNNNNNNNGC 2 cut(s) 59, 401
BstNI CCWGG 2 cut(s) 201, 254
BstNSI RCATGY 1 cut(s) 274
BstSCI CCNGG 2 cut(s) 199, 252
BstSFI CTRYAG 1 cut(s) 57
BstV1I GCAGC 1 cut(s) 71
BstV2I GAAGAC 1 cut(s) 308
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
BtgI CCRYGG 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 405
Cac8I GCNNGC 1 cut(s) 397
Cfr13I GGNCC 1 cut(s) 250
CviAII CATG 3 cut(s) 107, 271, 375
CviJI RGCY 3 cut(s) 29, 260, 404
CviKI_1 RGCY 3 cut(s) 29, 260, 404
DdeI CTNAG 2 cut(s) 68, 423
DpnI GATC 1 cut(s) 40
DpnII GATC 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 250
Eco57I CTGAAG 2 cut(s) 170, 404
EcoO109I RGGNCCY 1 cut(s) 250
EcoRII CCWGG 2 cut(s) 199, 252
EcoT14I CCWWGG 1 cut(s) 106
ErhI CCWWGG 1 cut(s) 106
FaeI CATG 3 cut(s) 110, 274, 378
FaiI YATR 7 cut(s) 21, 108, 117, 170, 206, 272, 376
FalI AAGNNNNNCTT 2 cut(s) 18, 50
FaqI GGGAC 1 cut(s) 263
FatI CATG 3 cut(s) 106, 270, 374
FblI GTMKAC 1 cut(s) 305
Fnu4HI GCNGC 1 cut(s) 60
Fsp4HI GCNGC 1 cut(s) 60
GluI GCNGC 1 cut(s) 60
Hin1II CATG 3 cut(s) 110, 274, 378
HindIII AAGCTT 1 cut(s) 27
HinfI GANTC 3 cut(s) 44, 302, 350
HphI GGTGA 3 cut(s) 350, 354, 405
Hpy166II GTNNAC 3 cut(s) 232, 306, 413
Hpy188I TCNGA 4 cut(s) 43, 189, 211, 349
Hpy188III TCNNGA 1 cut(s) 320
Hpy8I GTNNAC 3 cut(s) 232, 306, 413
HpyCH4III ACNGT 2 cut(s) 216, 298
HpyCH4V TGCA 3 cut(s) 59, 86, 374
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 401
HpyF3I CTNAG 2 cut(s) 68, 423
Hsp92II CATG 3 cut(s) 110, 274, 378
Kzo9I GATC 1 cut(s) 38
Lsp1109I GCAGC 1 cut(s) 71
MaeIII GTNAC 3 cut(s) 126, 145, 360
MalI GATC 1 cut(s) 40
MboI GATC 1 cut(s) 38
MboII GAAGA 3 cut(s) 176, 308, 397
MflI RGATCY 1 cut(s) 38
MluCI AATT 2 cut(s) 161, 367
MlyI GAGTC 1 cut(s) 311
MnlI CCTC 1 cut(s) 151
MroXI GAANNNNTTC 2 cut(s) 183, 315
MslI CAYNNNNRTG 1 cut(s) 269
MspR9I CCNGG 2 cut(s) 201, 254
MvaI CCWGG 2 cut(s) 201, 254
MwoI GCNNNNNNNGC 2 cut(s) 59, 401
NcoI CCATGG 1 cut(s) 106
NdeII GATC 1 cut(s) 38
NlaIII CATG 3 cut(s) 110, 274, 378
NlaIV GGNNCC 1 cut(s) 251
NmuCI GTSAC 3 cut(s) 126, 145, 360
NspI RCATGY 1 cut(s) 274
PdmI GAANNNNTTC 2 cut(s) 183, 315
PfeI GAWTC 2 cut(s) 44, 350
PkrI GCNGC 1 cut(s) 61
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
PpuMI RGGWCCY 1 cut(s) 250
Psp5II RGGWCCY 1 cut(s) 250
Psp6I CCWGG 2 cut(s) 199, 252
PspGI CCWGG 2 cut(s) 199, 252
PspN4I GGNNCC 1 cut(s) 251
PspPI GGNCC 1 cut(s) 250
PspPPI RGGWCCY 1 cut(s) 250
PstI CTGCAG 1 cut(s) 61
PsuI RGATCY 1 cut(s) 38
RseI CAYNNNNRTG 1 cut(s) 269
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 1 cut(s) 38
Sau96I GGNCC 1 cut(s) 250
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 2 cut(s) 201, 254
SetI ASST 3 cut(s) 31, 255, 262
SfcI CTRYAG 1 cut(s) 57
SinI GGWCC 1 cut(s) 250
SmiMI CAYNNNNRTG 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 2 cut(s) 161, 367
StyD4I CCNGG 2 cut(s) 199, 252
StyI CCWWGG 1 cut(s) 106
TaaI ACNGT 2 cut(s) 216, 298
TaqI TCGA 1 cut(s) 300
TasI AATT 2 cut(s) 161, 367
TfiI GAWTC 2 cut(s) 44, 350
TscAI CASTG 1 cut(s) 412
TseFI GTSAC 3 cut(s) 126, 145, 360
TseI GCWGC 1 cut(s) 59
Tsp45I GTSAC 3 cut(s) 126, 145, 360
TspDTI ATGAA 2 cut(s) 111, 156
TspRI CASTG 1 cut(s) 412
VpaK11BI GGWCC 1 cut(s) 250
XapI RAATTY 2 cut(s) 161, 367
XceI RCATGY 1 cut(s) 274
XcmI CCANNNNNNNNNTGG 2 cut(s) 113, 372
XmiI GTMKAC 1 cut(s) 305
XmnI GAANNNNTTC 2 cut(s) 183, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.