Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0004663

Physical Location & Seq

Genomic Coordinates Forward (+)

9763049 .. 9764400

Gene Structure 1352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g11540.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGAAGCCAGGACTTTCTTCTTTGAATCCCTACGCAGCAGCATACATTCCACTCTCGAAGAGGGAGACAGATGATAGAACTTATGTGACAACAAAAGATTCTAGCCGCAGCAATGAGTCAGTTTGGTTTGGGAACCCTCAGAATTTTACCCATAATCAACATCATAACAAACCTTATCTTGAATCTGATGCCCCTGGTACTGCAACACTCCAGAGTCCAAAGTCATATGCTGTAAAGAACTACCCTGCTCATGGCTATTATGGTTCATCTTCGCAGAATGTGATTAAAGTGTCAGAAAATGAAGATTTTGATATGGATATGGAATATCTTGGGATGTCATTTCCTGGTATATCTGATCAGTCCCTTAGTGATGTGTATTTGGCAAATAGGGGCGACCTGGATGCCACCATTGACATGCTGAACCAACTTGAGGTTGTGTTGTTTTCGAATCTTCTGAAAGTCTTCCAGACACTTTGGACATTGGTGATGTTTCTGAATCTGGGTTGGTGGGCAATAATGCATGGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

177

Amino Acids

19.87

Weight (kDa)

5.05

Isoelectric Point (pI)

43.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004663)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11440 AT5G11440 AT5G25540 AT5G25540 AT5G25540
fragaria_vesca	FvH4_2g30160 FvH4_2g30160 FvH4_2g30160 FvH4_2g30160 FvH4_2g30160
malus_domestica	MD08G1136600.v1.1
prunus_persica	Prupe.1G466700_v2.0.a1 Prupe.1G466700_v2.0.a1 Prupe.1G466700_v2.0.a1 Prupe.1G466700_v2.0.a1
pyrus_communis	pycom08g11540 pycom15g10400 pycom15g10410
rosa_chinensis	RchiOBHm_Chr6g0312751
rosa_laevigata	RLG00000010301
rosa_multiflora	Rmu_ssc0000412.1_g000014
rosa_roxburghii	Rroxscaffold_7G00156530
rosa_rugosa	Rorug06G0399200 Rorug06G0399300 Rorug06G0399400 Rorug06G0399500
rosa_samantha	Rh6AG516300 Rh6BG527600 Rh6CG532500 Rh6DG518600
rosa_wichuraiana	Rw6G044860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	106
AcsI	RAATTY	1 cut(s)	142
AfaI	GTAC	1 cut(s)	199
AfiI	CCNNNNNNNGG	2 cut(s)	251, 430
AgsI	TTSAA	2 cut(s)	25, 182
AjnI	CCWGG	4 cut(s)	7, 193, 343, 396
Alw26I	GTCTC	1 cut(s)	59
ApeKI	GCWGC	3 cut(s)	35, 38, 108
ApoI	RAATTY	1 cut(s)	142
Asp700I	GAANNNNTTC	1 cut(s)	461
AsuHPI	GGTGA	1 cut(s)	496
AsuII	TTCGAA	1 cut(s)	446
BbsI	GAAGAC	1 cut(s)	454
BbvI	GCAGC	3 cut(s)	47, 50, 120
BcgI	CGANNNNNNTGC	2 cut(s)	383, 417
BciT130I	CCWGG	4 cut(s)	9, 195, 345, 398
BclI	TGATCA	1 cut(s)	355
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	1 cut(s)	102
BisI	GCNGC	4 cut(s)	36, 39, 106, 109
BlsI	GCNGC	4 cut(s)	37, 40, 107, 110
Bme1390I	CCNGG	4 cut(s)	9, 195, 345, 398
BmiI	GGNNCC	1 cut(s)	134
BmrFI	CCNGG	4 cut(s)	9, 195, 345, 398
BmsI	GCATC	2 cut(s)	178, 391
BpiI	GAAGAC	1 cut(s)	454
BpmI	CTGGAG	1 cut(s)	194
Bpu14I	TTCGAA	1 cut(s)	446
BpuEI	CTTGAG	1 cut(s)	449
BsaJI	CCNNGG	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	2 cut(s)	251, 430
Bse3DI	GCAATG	1 cut(s)	118
BseBI	CCWGG	4 cut(s)	9, 195, 345, 398
BseDI	CCNNGG	1 cut(s)	193
BseGI	GGATG	2 cut(s)	339, 406
BseLI	CCNNNNNNNGG	2 cut(s)	251, 430
BseMI	GCAATG	1 cut(s)	118
BseMII	CTCAG	1 cut(s)	152
BseXI	GCAGC	3 cut(s)	47, 50, 120
BslFI	GGGAC	1 cut(s)	346
BslI	CCNNNNNNNGG	2 cut(s)	251, 430
BsmAI	GTCTC	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	346
Bsp119I	TTCGAA	1 cut(s)	446
Bsp143I	GATC	1 cut(s)	355
BspACI	CCGC	1 cut(s)	106
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	134
BspT104I	TTCGAA	1 cut(s)	446
BsrDI	GCAATG	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	1 cut(s)	355
Bst2UI	CCWGG	4 cut(s)	9, 195, 345, 398
Bst6I	CTCTTC	1 cut(s)	53
BstBI	TTCGAA	1 cut(s)	446
BstDEI	CTNAG	2 cut(s)	138, 365
BstF5I	GGATG	2 cut(s)	339, 406
BstKTI	GATC	1 cut(s)	358
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	1 cut(s)	355
BstNI	CCWGG	4 cut(s)	9, 195, 345, 398
BstNSI	RCATGY	1 cut(s)	418
BstSCI	CCNGG	4 cut(s)	7, 193, 343, 396
BstV1I	GCAGC	3 cut(s)	47, 50, 120
BstV2I	GAAGAC	1 cut(s)	454
BtsCI	GGATG	2 cut(s)	339, 406
Csp6I	GTAC	1 cut(s)	198
CviAII	CATG	3 cut(s)	251, 415, 521
CviJI	RGCY	3 cut(s)	7, 105, 255
CviKI_1	RGCY	3 cut(s)	7, 105, 255
CviQI	GTAC	1 cut(s)	198
DdeI	CTNAG	2 cut(s)	138, 365
DpnI	GATC	1 cut(s)	357
DpnII	GATC	1 cut(s)	355
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
EcoRII	CCWGG	4 cut(s)	7, 193, 343, 396
EcoT22I	ATGCAT	1 cut(s)	522
FaeI	CATG	3 cut(s)	254, 418, 524
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	3 cut(s)	250, 414, 520
FauNDI	CATATG	1 cut(s)	226
FbaI	TGATCA	1 cut(s)	355
Fnu4HI	GCNGC	4 cut(s)	36, 39, 106, 109
FokI	GGATG	2 cut(s)	346, 413
Fsp4HI	GCNGC	4 cut(s)	36, 39, 106, 109
FspBI	CTAG	1 cut(s)	102
GluI	GCNGC	4 cut(s)	36, 39, 106, 109
GsuI	CTGGAG	1 cut(s)	194
Hin1II	CATG	3 cut(s)	254, 418, 524
HinfI	GANTC	7 cut(s)	25, 98, 116, 182, 214, 448, 496
HphI	GGTGA	1 cut(s)	496
Hpy188I	TCNGA	6 cut(s)	141, 187, 295, 355, 456, 495
Hpy188III	TCNNGA	4 cut(s)	55, 179, 211, 466
HpyCH4V	TGCA	2 cut(s)	203, 520
HpyF3I	CTNAG	2 cut(s)	138, 365
Hsp92II	CATG	3 cut(s)	254, 418, 524
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	1 cut(s)	355
Lsp1109I	GCAGC	3 cut(s)	47, 50, 120
LweI	GCATC	2 cut(s)	178, 391
MaeI	CTAG	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	1 cut(s)	357
MboI	GATC	1 cut(s)	355
MboII	GAAGA	6 cut(s)	9, 70, 261, 314, 443, 454
MluCI	AATT	1 cut(s)	142
MlyI	GAGTC	2 cut(s)	125, 223
MnlI	CCTC	3 cut(s)	54, 147, 424
Mph1103I	ATGCAT	1 cut(s)	522
MroXI	GAANNNNTTC	1 cut(s)	461
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	1 cut(s)	413
MspR9I	CCNGG	4 cut(s)	9, 195, 345, 398
MvaI	CCWGG	4 cut(s)	9, 195, 345, 398
NdeI	CATATG	1 cut(s)	226
NdeII	GATC	1 cut(s)	355
NlaIII	CATG	3 cut(s)	254, 418, 524
NlaIV	GGNNCC	1 cut(s)	134
NmuCI	GTSAC	1 cut(s)	85
NsiI	ATGCAT	1 cut(s)	522
NspI	RCATGY	1 cut(s)	418
NspV	TTCGAA	1 cut(s)	446
PdmI	GAANNNNTTC	1 cut(s)	461
PfeI	GAWTC	5 cut(s)	25, 98, 182, 448, 496
PkrI	GCNGC	4 cut(s)	37, 40, 107, 110
PleI	GAGTC	2 cut(s)	124, 222
PpsI	GAGTC	2 cut(s)	124, 222
Psp6I	CCWGG	4 cut(s)	7, 193, 343, 396
PspGI	CCWGG	4 cut(s)	7, 193, 343, 396
PspN4I	GGNNCC	1 cut(s)	134
RsaI	GTAC	1 cut(s)	199
RsaNI	GTAC	1 cut(s)	198
RseI	CAYNNNNRTG	1 cut(s)	413
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	4 cut(s)	36, 39, 106, 109
Sau3AI	GATC	1 cut(s)	355
SchI	GAGTC	2 cut(s)	125, 223
ScrFI	CCNGG	4 cut(s)	9, 195, 345, 398
SetI	ASST	3 cut(s)	175, 399, 435
SfaNI	GCATC	2 cut(s)	178, 391
SfuI	TTCGAA	1 cut(s)	446
SmiMI	CAYNNNNRTG	1 cut(s)	413
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	1 cut(s)	142
SsiI	CCGC	1 cut(s)	106
SspMI	CTAG	1 cut(s)	102
StyD4I	CCNGG	4 cut(s)	7, 193, 343, 396
TaqI	TCGA	2 cut(s)	56, 446
TasI	AATT	1 cut(s)	142
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	5 cut(s)	25, 98, 182, 448, 496
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	3 cut(s)	35, 38, 108
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	3 cut(s)	17, 255, 315
XapI	RAATTY	1 cut(s)	142
XceI	RCATGY	1 cut(s)	418
XmnI	GAANNNNTTC	1 cut(s)	461
XspI	CTAG	1 cut(s)	102
Zsp2I	ATGCAT	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.