AT5G11450

PsbP

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0008432
Physical Location & Seq
Forward (+)
3654392 .. 3656647
2256 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G11450.2

Sequence Viewer

Length: 894 bp
ATGGCTCTTCTCTGTCCTTCTCTTCCCTCTCCGAATTCTCGTCTTTTCAGGTGCAGGAGCAGCAATATTTCGAGCAAGTATCATGGAGCCTCAAAGGAGCTGATGATTGCTCGTTCTGGTGTGTCTACGAGATCAATTTCTTCGGAAAAGGGGCTTTCTCGTAGGGATTTAGTGCTCATTGGTCTCTCTTCTCCGTTGTCTATGTTCTTGCCATTGTCTTCTCCAGTCACTCATGCAGAAGAAGACGTGAAAATGAGTGGAGAAGAATTGAAAATGGGTACAATGGTGGATGATATTAATGCTTATTCTTATGCTTACCCATTGGATTATCCATCTGAGAAGCTTGTCTTCAAATGGGTTGAATCAAGAAAGCCTGAAAGATACTCTTCAGCTGCACCACTCTCTCCTGATGCACGTTTACGGATTGTTTCTGAACGAGTTGACCTAACTGACAACCTCGTCATTTCTATTTCGATAGGTCCCCCAAACTCAAGATTAACATCAAAAGAAAAGAAAACATGGTCCGCTAAAGAAGTTGCTGATTCTGTTTTGTCTGATAAATCAGCATTGCGTGTCACCTCAAGTCAGCGTCTTGAAGAGAGTTCGGTTCTTGATGCTCATGCTAGTGATATTGATGGGGAGCCTTACTGGTACTACGAGTACCTTGTCCGCAAATCACCAACCAAAATTGCTGAAGCATCAAAGCTTTACAGACACTATATTTCTTCAACAGCTGAACGTGATGGATACTTATACACCATAAATGCTTCAACCCTTGGCAAGCAGTGGGACAAGATGGGACCGGTGTTAGAAAGAGCAGTAGGATCCTTTAGGCTTCTTCCTCCTACTGATAGTTATGTTCCTCCATACAAGGATCCATGGAGGTTTTGGTGA

Protein Analysis

297

Amino Acids

33.36

Weight (kDa)

8.83

Isoelectric Point (pI)

54.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 114 - 296 1.4e-13 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 458
AccI GTMKAC 1 cut(s) 125
AciI CCGC 2 cut(s) 525, 670
AclWI GGATC 4 cut(s) 819, 832, 869, 882
AcsI RAATTY 1 cut(s) 34
AcuI CTGAAG 2 cut(s) 372, 714
AfaI GTAC 3 cut(s) 280, 653, 662
AgeI ACCGGT 1 cut(s) 802
AgsI TTSAA 6 cut(s) 271, 352, 362, 596, 729, 771
AjiI CACGTC 1 cut(s) 247
AluBI AGCT 5 cut(s) 100, 343, 392, 706, 734
AluI AGCT 5 cut(s) 100, 343, 392, 706, 734
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 188
AlwI GGATC 4 cut(s) 819, 832, 869, 882
ApeKI GCWGC 2 cut(s) 60, 392
ApoI RAATTY 1 cut(s) 34
AseI ATTAAT 1 cut(s) 297
AsiGI ACCGGT 1 cut(s) 802
AspS9I GGNCC 3 cut(s) 479, 522, 800
AsuHPI GGTGA 2 cut(s) 568, 669
AvaII GGWCC 3 cut(s) 479, 522, 800
BaeI ACNNNNGTAYC 2 cut(s) 270, 303
BamHI GGATCC 2 cut(s) 824, 874
BbsI GAAGAC 3 cut(s) 210, 249, 340
Bbv12I GWGCWC 1 cut(s) 177
BbvI GCAGC 2 cut(s) 72, 379
BccI CCATC 4 cut(s) 340, 629, 737, 790
BciVI GTATCC 1 cut(s) 740
BcoDI GTCTC 1 cut(s) 188
BfaI CTAG 1 cut(s) 624
BfuI GTATCC 1 cut(s) 740
BisI GCNGC 2 cut(s) 61, 393
BlsI GCNGC 2 cut(s) 62, 394
Bme18I GGWCC 3 cut(s) 479, 522, 800
BmgBI CACGTC 1 cut(s) 247
BmgT120I GGNCC 3 cut(s) 479, 522, 800
BmiI GGNNCC 6 cut(s) 88, 481, 642, 801, 826, 876
BmsI GCATC 3 cut(s) 400, 604, 707
BpiI GAAGAC 3 cut(s) 210, 249, 340
BpmI CTGGAG 1 cut(s) 207
BpuEI CTTGAG 2 cut(s) 475, 565
BsaBI GATNNNNATC 1 cut(s) 499
BsaI GGTCTC 1 cut(s) 188
BsaJI CCNNGG 2 cut(s) 775, 878
BsaWI WCCGGW 1 cut(s) 802
Bse118I RCCGGY 1 cut(s) 802
Bse1I ACTGG 2 cut(s) 224, 653
Bse3DI GCAATG 1 cut(s) 566
Bse8I GATNNNNATC 1 cut(s) 499
BseDI CCNNGG 2 cut(s) 775, 878
BseGI GGATG 1 cut(s) 295
BseJI GATNNNNATC 1 cut(s) 499
BseMI GCAATG 1 cut(s) 566
BseMII CTCAG 1 cut(s) 327
BseNI ACTGG 2 cut(s) 224, 653
BseXI GCAGC 2 cut(s) 72, 379
BsgI GTGCAG 2 cut(s) 73, 378
BshTI ACCGGT 1 cut(s) 802
BsiHKAI GWGCWC 1 cut(s) 177
BsiSI CCGG 1 cut(s) 803
BslFI GGGAC 3 cut(s) 465, 803, 813
BsmAI GTCTC 1 cut(s) 188
BsmFI GGGAC 3 cut(s) 465, 803, 813
Bso31I GGTCTC 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 177
Bsp143I GATC 3 cut(s) 131, 824, 874
Bsp19I CCATGG 1 cut(s) 878
BspACI CCGC 2 cut(s) 525, 670
BspCNI CTCAG 1 cut(s) 328
BspLI GGNNCC 6 cut(s) 88, 481, 642, 801, 826, 876
BspPI GGATC 4 cut(s) 819, 832, 869, 882
BspQI GCTCTTC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 566
BsrFI RCCGGY 1 cut(s) 802
BsrI ACTGG 2 cut(s) 224, 653
BssAI RCCGGY 1 cut(s) 802
BssECI CCNNGG 2 cut(s) 775, 878
BssMI GATC 3 cut(s) 131, 824, 874
BssT1I CCWWGG 2 cut(s) 775, 878
Bst6I CTCTTC 5 cut(s) 12, 27, 193, 391, 591
BstC8I GCNNGC 1 cut(s) 782
BstDEI CTNAG 1 cut(s) 336
BstDSI CCRYGG 1 cut(s) 878
BstF5I GGATG 1 cut(s) 295
BstKTI GATC 3 cut(s) 134, 827, 877
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 3 cut(s) 131, 824, 874
BstMWI GCNNNNNNNGC 1 cut(s) 60
BstV1I GCAGC 2 cut(s) 72, 379
BstV2I GAAGAC 3 cut(s) 210, 249, 340
BstX2I RGATCY 2 cut(s) 824, 874
BstYI RGATCY 2 cut(s) 824, 874
BsuI GTATCC 1 cut(s) 740
BtgI CCRYGG 1 cut(s) 878
BtrI CACGTC 1 cut(s) 247
BtsCI GGATG 1 cut(s) 295
BtsI GCAGTG 1 cut(s) 791
BtsIMutI CAGTG 1 cut(s) 791
Cac8I GCNNGC 1 cut(s) 782
Cfr10I RCCGGY 1 cut(s) 802
Cfr13I GGNCC 3 cut(s) 479, 522, 800
CseI GACGC 1 cut(s) 578
Csp6I GTAC 3 cut(s) 279, 652, 661
CspAI ACCGGT 1 cut(s) 802
CviAII CATG 5 cut(s) 83, 233, 519, 620, 879
CviQI GTAC 3 cut(s) 279, 652, 661
DdeI CTNAG 1 cut(s) 336
DpnI GATC 3 cut(s) 133, 826, 876
DpnII GATC 3 cut(s) 131, 824, 874
DrdI GACNNNNNNGTC 1 cut(s) 458
DseDI GACNNNNNNGTC 1 cut(s) 458
Eam1104I CTCTTC 5 cut(s) 12, 27, 193, 391, 591
EarI CTCTTC 5 cut(s) 12, 27, 193, 391, 591
Eco130I CCWWGG 2 cut(s) 775, 878
Eco31I GGTCTC 1 cut(s) 188
Eco47I GGWCC 3 cut(s) 479, 522, 800
Eco57I CTGAAG 2 cut(s) 372, 714
EcoO109I RGGNCCY 1 cut(s) 479
EcoRI GAATTC 1 cut(s) 34
EcoT14I CCWWGG 2 cut(s) 775, 878
ErhI CCWWGG 2 cut(s) 775, 878
FaeI CATG 5 cut(s) 86, 236, 522, 623, 882
FalI AAGNNNNNCTT 4 cut(s) 332, 364, 370, 402
FaqI GGGAC 3 cut(s) 465, 803, 813
FatI CATG 5 cut(s) 82, 232, 518, 619, 878
FblI GTMKAC 1 cut(s) 125
Fnu4HI GCNGC 2 cut(s) 61, 393
FokI GGATG 1 cut(s) 302
Fsp4HI GCNGC 2 cut(s) 61, 393
FspBI CTAG 1 cut(s) 624
GluI GCNGC 2 cut(s) 61, 393
GsuI CTGGAG 1 cut(s) 207
HapII CCGG 1 cut(s) 803
HgaI GACGC 1 cut(s) 578
Hin1II CATG 5 cut(s) 86, 236, 522, 623, 882
HincII GTYRAC 1 cut(s) 442
HindII GTYRAC 1 cut(s) 442
HindIII AAGCTT 2 cut(s) 341, 704
HinfI GANTC 2 cut(s) 362, 542
HpaII CCGG 1 cut(s) 803
HphI GGTGA 2 cut(s) 568, 669
Hpy166II GTNNAC 3 cut(s) 126, 419, 442
Hpy188I TCNGA 5 cut(s) 33, 145, 337, 433, 556
Hpy188III TCNNGA 5 cut(s) 366, 407, 492, 593, 611
Hpy8I GTNNAC 3 cut(s) 126, 419, 442
HpyAV CCTTC 1 cut(s) 27
HpyCH4IV ACGT 3 cut(s) 246, 415, 739
HpyCH4V TGCA 4 cut(s) 54, 236, 395, 413
HpyF10VI GCNNNNNNNGC 1 cut(s) 60
HpyF3I CTNAG 1 cut(s) 336
HpySE526I ACGT 3 cut(s) 246, 415, 739
Hsp92II CATG 5 cut(s) 86, 236, 522, 623, 882
Kzo9I GATC 3 cut(s) 131, 824, 874
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 4 cut(s) 57, 86, 97, 640
LpnPI CCDG 8 cut(s) 34, 40, 102, 237, 387, 420, 634, 816
Lsp1109I GCAGC 2 cut(s) 72, 379
LweI GCATC 3 cut(s) 400, 604, 707
MaeI CTAG 1 cut(s) 624
MaeII ACGT 3 cut(s) 246, 415, 739
MaeIII GTNAC 2 cut(s) 226, 574
MalI GATC 3 cut(s) 133, 826, 876
MboI GATC 3 cut(s) 131, 824, 874
MflI RGATCY 2 cut(s) 824, 874
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 4 cut(s) 34, 135, 266, 687
MnlI CCTC 7 cut(s) 37, 100, 467, 589, 852, 873, 876
MseI TTAA 2 cut(s) 297, 497
MslI CAYNNNNRTG 1 cut(s) 624
MspA1I CMGCKG 2 cut(s) 392, 734
MspI CCGG 1 cut(s) 803
MwoI GCNNNNNNNGC 1 cut(s) 60
NcoI CCATGG 1 cut(s) 878
NdeII GATC 3 cut(s) 131, 824, 874
NlaIII CATG 5 cut(s) 86, 236, 522, 623, 882
NlaIV GGNNCC 6 cut(s) 88, 481, 642, 801, 826, 876
NmuCI GTSAC 2 cut(s) 226, 574
PciSI GCTCTTC 1 cut(s) 12
PfeI GAWTC 2 cut(s) 362, 542
PinAI ACCGGT 1 cut(s) 802
PkrI GCNGC 2 cut(s) 62, 394
PpuMI RGGWCCY 1 cut(s) 479
PshBI ATTAAT 1 cut(s) 297
Psp5II RGGWCCY 1 cut(s) 479
PspN4I GGNNCC 6 cut(s) 88, 481, 642, 801, 826, 876
PspPI GGNCC 3 cut(s) 479, 522, 800
PspPPI RGGWCCY 1 cut(s) 479
PsuI RGATCY 2 cut(s) 824, 874
PvuII CAGCTG 2 cut(s) 392, 734
RsaI GTAC 3 cut(s) 280, 653, 662
RsaNI GTAC 3 cut(s) 279, 652, 661
RseI CAYNNNNRTG 1 cut(s) 624
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 2 cut(s) 297, 497
SatI GCNGC 2 cut(s) 61, 393
Sau3AI GATC 3 cut(s) 131, 824, 874
Sau96I GGNCC 3 cut(s) 479, 522, 800
SduI GDGCHC 1 cut(s) 177
SfaNI GCATC 3 cut(s) 400, 604, 707
SinI GGWCC 3 cut(s) 479, 522, 800
SmiMI CAYNNNNRTG 1 cut(s) 624
SmlI CTYRAG 2 cut(s) 490, 580
SmoI CTYRAG 2 cut(s) 490, 580
Sse9I AATT 4 cut(s) 34, 135, 266, 687
SsiI CCGC 2 cut(s) 525, 670
SspI AATATT 1 cut(s) 67
SspMI CTAG 1 cut(s) 624
StyI CCWWGG 2 cut(s) 775, 878
TaiI ACGT 3 cut(s) 249, 418, 742
TaqI TCGA 2 cut(s) 71, 473
TasI AATT 4 cut(s) 34, 135, 266, 687
TfiI GAWTC 2 cut(s) 362, 542
Tru1I TTAA 2 cut(s) 297, 497
Tru9I TTAA 2 cut(s) 297, 497
TscAI CASTG 1 cut(s) 791
TseFI GTSAC 2 cut(s) 226, 574
TseI GCWGC 2 cut(s) 60, 392
Tsp45I GTSAC 2 cut(s) 226, 574
TspGWI ACGGA 2 cut(s) 183, 436
TspRI CASTG 1 cut(s) 791
VpaK11BI GGWCC 3 cut(s) 479, 522, 800
VspI ATTAAT 1 cut(s) 297
XapI RAATTY 1 cut(s) 34
XcmI CCANNNNNNNNNTGG 1 cut(s) 885
XmiI GTMKAC 1 cut(s) 125
XspI CTAG 1 cut(s) 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.