Rh6BG527500

psbP domain-containing protein 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0008432
Physical Location & Seq
Reverse (-)
71884480 .. 71887734
3255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG527500.1

Sequence Viewer

Length: 876 bp
ATGGTTATTCTCTCTCCCTCTCTTTCTCTCTTCACCTCCAATCCAAACCTCTTCTTCTTCAGGTACTCTTCATCTCCATCTCTTACTTCAACAGTGGTGCACCAGCAGAGCAAATGCAGAGTACTTGAACCATGCTCAAACCCCAATTTCCAAAATGGGTTCTGCAGAAGAGAGTTATTGCTGTTTGGCCTTTCTTCTCCCCTCTTAACAGTTTTGCCATCTTCAGGGTCCCTTGCAGAAGAAGATGTGAAAATGGCTTCGTTTGCTGATGACATAAATTCTTATTCTTATCTCTACCCGGTGGAGTTGCAATCTAAGAAGGTCATCTTCAAATGGGTGGAATCGAGAAAGCCGGAACGCTATTCATCAGCTGCTCCATTATCTCCTGATGCACGCCTGCGCATTGTCTCTGAGCGTGTTGACATTATCGATAATCTCATAATTTCCATTTCGATAGGTCCCCCAAATTCGAAGATTATAAAATCACCGGACAAGAGTACCTGGACTGCAAAAGATGTTGCTGATTCTGTTTTGGCTGACAAGTCTGCATTGCGGGTTACCTCAACTCAGCGAATGGCTGAGAGTTCAGTTCTTGATGCACATACTAGTGAAATTGATGGTCAGCCATATTGGAATTTTGAGTACCTTGTCCGCAAAGCACCCACAAAAACTGCTCAAGAATCTAACAGTTACCGGCACTATGTGGCTTCAACAACCGAACGAGATGGTTATTTGTACTGTATAAACGCTTCAACTCTCAACAAGCAGTGGAACATTATGGGACCTATCTTGCAAAAGACTGTAGATTCATTTCACCTTCTCCCTCCCACAGAAAACTATGTTCCTCCATTCAAGGATCCATGGAGATTTTGGTGA

Protein Analysis

291

Amino Acids

32.89

Weight (kDa)

8.24

Isoelectric Point (pI)

48.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 85 - 272 2e-15 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 479
Acc16I TGCGCA 1 cut(s) 401
AciI CCGC 2 cut(s) 553, 652
AclWI GGATC 2 cut(s) 851, 864
AcsI RAATTY 3 cut(s) 277, 466, 634
AcuI CTGAAG 2 cut(s) 43, 207
AdeI CACNNNGTG 1 cut(s) 703
AfaI GTAC 5 cut(s) 65, 123, 499, 644, 737
AfiI CCNNNNNNNGG 1 cut(s) 224
AgsI TTSAA 6 cut(s) 90, 128, 331, 711, 753, 853
AhlI ACTAGT 1 cut(s) 605
AjnI CCWGG 1 cut(s) 500
AluBI AGCT 1 cut(s) 371
AluI AGCT 1 cut(s) 371
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 1 cut(s) 412
Alw44I GTGCAC 1 cut(s) 98
AlwI GGATC 2 cut(s) 851, 864
AoxI GGCC 1 cut(s) 187
ApaLI GTGCAC 1 cut(s) 98
ApeKI GCWGC 1 cut(s) 371
ApoI RAATTY 3 cut(s) 277, 466, 634
AspLEI GCGC 1 cut(s) 402
AspS9I GGNCC 3 cut(s) 228, 458, 782
AsuC2I CCSGG 1 cut(s) 299
AsuHPI GGTGA 3 cut(s) 25, 477, 806
AsuII TTCGAA 1 cut(s) 470
AvaII GGWCC 3 cut(s) 228, 458, 782
BaeGI GKGCMC 1 cut(s) 102
BaeI ACNNNNGTAYC 2 cut(s) 481, 514
BamHI GGATCC 1 cut(s) 856
BarI GAAGNNNNNNTAC 2 cut(s) 733, 765
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 358
BccI CCATC 4 cut(s) 85, 226, 611, 719
BciT130I CCWGG 1 cut(s) 502
BcnI CCSGG 1 cut(s) 299
BcoDI GTCTC 1 cut(s) 412
BcuI ACTAGT 1 cut(s) 605
BfaI CTAG 1 cut(s) 606
BfmI CTRYAG 2 cut(s) 163, 801
BisI GCNGC 1 cut(s) 372
BlsI GCNGC 1 cut(s) 373
BmcAI AGTACT 1 cut(s) 123
Bme1390I CCNGG 2 cut(s) 299, 502
Bme18I GGWCC 3 cut(s) 228, 458, 782
BmgT120I GGNCC 3 cut(s) 228, 458, 782
BmiI GGNNCC 5 cut(s) 229, 230, 460, 783, 858
BmrFI CCNGG 2 cut(s) 299, 502
BmsI GCATC 2 cut(s) 379, 586
Bpu14I TTCGAA 1 cut(s) 470
BpuEI CTTGAG 1 cut(s) 660
BpuMI CCSGG 1 cut(s) 299
Bsa29I ATCGAT 1 cut(s) 429
BsaJI CCNNGG 1 cut(s) 860
BsaWI WCCGGW 1 cut(s) 487
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse118I RCCGGY 1 cut(s) 693
Bse3DI GCAATG 1 cut(s) 548
BseBI CCWGG 1 cut(s) 502
BseCI ATCGAT 1 cut(s) 429
BseDI CCNNGG 1 cut(s) 860
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMI GCAATG 1 cut(s) 548
BseMII CTCAG 3 cut(s) 402, 570, 581
BseSI GKGCMC 1 cut(s) 102
BseXI GCAGC 1 cut(s) 358
BshFI GGCC 1 cut(s) 189
BshVI ATCGAT 1 cut(s) 429
BsiHKAI GWGCWC 1 cut(s) 102
BsiSI CCGG 4 cut(s) 299, 353, 488, 694
BslFI GGGAC 3 cut(s) 214, 444, 795
BslI CCNNNNNNNGG 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 412
BsmFI GGGAC 3 cut(s) 214, 444, 795
BsnI GGCC 1 cut(s) 189
Bsp119I TTCGAA 1 cut(s) 470
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 1 cut(s) 856
Bsp19I CCATGG 1 cut(s) 860
BspACI CCGC 2 cut(s) 553, 652
BspANI GGCC 1 cut(s) 189
BspCNI CTCAG 3 cut(s) 403, 571, 580
BspDI ATCGAT 1 cut(s) 429
BspLI GGNNCC 5 cut(s) 229, 230, 460, 783, 858
BspMAI CTGCAG 1 cut(s) 167
BspPI GGATC 2 cut(s) 851, 864
BspT104I TTCGAA 1 cut(s) 470
BsrDI GCAATG 1 cut(s) 548
BsrFI RCCGGY 1 cut(s) 693
BssAI RCCGGY 1 cut(s) 693
BssECI CCNNGG 1 cut(s) 860
BssMI GATC 1 cut(s) 856
BssT1I CCWWGG 1 cut(s) 860
Bst2UI CCWGG 1 cut(s) 502
Bst4CI ACNGT 5 cut(s) 94, 211, 689, 740, 802
Bst6I CTCTTC 4 cut(s) 35, 56, 73, 163
BstBI TTCGAA 1 cut(s) 470
BstC8I GCNNGC 2 cut(s) 394, 398
BstDEI CTNAG 4 cut(s) 315, 411, 567, 579
BstDSI CCRYGG 1 cut(s) 860
BstEII GGTNACC 1 cut(s) 556
BstHHI GCGC 1 cut(s) 402
BstKTI GATC 1 cut(s) 859
BstMAI GTCTC 1 cut(s) 412
BstMBI GATC 1 cut(s) 856
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstNI CCWGG 1 cut(s) 502
BstPI GGTNACC 1 cut(s) 556
BstSCI CCNGG 2 cut(s) 297, 500
BstSFI CTRYAG 2 cut(s) 163, 801
BstSLI GKGCMC 1 cut(s) 102
BstV1I GCAGC 1 cut(s) 358
BstX2I RGATCY 1 cut(s) 856
BstYI RGATCY 1 cut(s) 856
Bsu15I ATCGAT 1 cut(s) 429
BsuRI GGCC 1 cut(s) 189
BsuTUI ATCGAT 1 cut(s) 429
BtgI CCRYGG 1 cut(s) 860
BtsI GCAGTG 1 cut(s) 773
BtsIMutI CAGTG 2 cut(s) 99, 773
Cac8I GCNNGC 2 cut(s) 394, 398
CfoI GCGC 1 cut(s) 402
Cfr10I RCCGGY 1 cut(s) 693
Cfr13I GGNCC 3 cut(s) 228, 458, 782
ClaI ATCGAT 1 cut(s) 429
Csp6I GTAC 5 cut(s) 64, 122, 498, 643, 736
CviAII CATG 2 cut(s) 132, 861
CviJI RGCY 8 cut(s) 189, 257, 352, 371, 536, 578, 625, 707
CviKI_1 RGCY 8 cut(s) 189, 257, 352, 371, 536, 578, 625, 707
CviQI GTAC 5 cut(s) 64, 122, 498, 643, 736
DdeI CTNAG 4 cut(s) 315, 411, 567, 579
DpnI GATC 1 cut(s) 858
DpnII GATC 1 cut(s) 856
DraIII CACNNNGTG 1 cut(s) 703
Eam1104I CTCTTC 4 cut(s) 35, 56, 73, 163
EarI CTCTTC 4 cut(s) 35, 56, 73, 163
Eco130I CCWWGG 1 cut(s) 860
Eco47I GGWCC 3 cut(s) 228, 458, 782
Eco57I CTGAAG 2 cut(s) 43, 207
Eco91I GGTNACC 1 cut(s) 556
EcoO109I RGGNCCY 3 cut(s) 228, 458, 782
EcoO65I GGTNACC 1 cut(s) 556
EcoRII CCWGG 1 cut(s) 500
EcoT14I CCWWGG 1 cut(s) 860
ErhI CCWWGG 1 cut(s) 860
FaeI CATG 2 cut(s) 135, 864
FalI AAGNNNNNCTT 2 cut(s) 311, 343
FaqI GGGAC 3 cut(s) 214, 444, 795
FatI CATG 2 cut(s) 131, 860
FauI CCCGC 1 cut(s) 546
Fnu4HI GCNGC 1 cut(s) 372
Fsp4HI GCNGC 1 cut(s) 372
FspBI CTAG 1 cut(s) 606
FspI TGCGCA 1 cut(s) 401
GlaI GCGC 1 cut(s) 401
GluI GCNGC 1 cut(s) 372
HaeIII GGCC 1 cut(s) 189
HapII CCGG 4 cut(s) 299, 353, 488, 694
HhaI GCGC 1 cut(s) 402
Hin1II CATG 2 cut(s) 135, 864
Hin6I GCGC 1 cut(s) 400
HinP1I GCGC 1 cut(s) 400
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HinfI GANTC 4 cut(s) 341, 524, 680, 806
HpaII CCGG 4 cut(s) 299, 353, 488, 694
HphI GGTGA 3 cut(s) 25, 477, 806
Hpy166II GTNNAC 2 cut(s) 100, 421
Hpy188I TCNGA 1 cut(s) 412
Hpy188III TCNNGA 4 cut(s) 345, 386, 593, 677
Hpy8I GTNNAC 2 cut(s) 100, 421
HpyAV CCTTC 2 cut(s) 313, 827
HpyCH4III ACNGT 5 cut(s) 94, 211, 689, 740, 802
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 4 cut(s) 315, 411, 567, 579
Hsp92II CATG 2 cut(s) 135, 864
HspAI GCGC 1 cut(s) 400
KflI GGGWCCC 1 cut(s) 228
Kzo9I GATC 1 cut(s) 856
LmnI GCTCC 1 cut(s) 379
Lsp1109I GCAGC 1 cut(s) 358
LweI GCATC 2 cut(s) 379, 586
MaeI CTAG 1 cut(s) 606
MaeIII GTNAC 2 cut(s) 556, 689
MalI GATC 1 cut(s) 858
MboI GATC 1 cut(s) 856
MflI RGATCY 1 cut(s) 856
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 6 cut(s) 145, 277, 441, 466, 612, 634
MnlI CCTC 7 cut(s) 28, 46, 59, 212, 571, 834, 855
MseI TTAA 1 cut(s) 206
MslI CAYNNNNRTG 1 cut(s) 606
MspA1I CMGCKG 1 cut(s) 371
MspI CCGG 4 cut(s) 299, 353, 488, 694
MspR9I CCNGG 2 cut(s) 299, 502
MvaI CCWGG 1 cut(s) 502
MwoI GCNNNNNNNGC 1 cut(s) 263
NciI CCSGG 1 cut(s) 299
NcoI CCATGG 1 cut(s) 860
NdeII GATC 1 cut(s) 856
NlaIII CATG 2 cut(s) 135, 864
NlaIV GGNNCC 5 cut(s) 229, 230, 460, 783, 858
NsbI TGCGCA 1 cut(s) 401
NspV TTCGAA 1 cut(s) 470
PfeI GAWTC 4 cut(s) 341, 524, 680, 806
PkrI GCNGC 1 cut(s) 373
PpuMI RGGWCCY 3 cut(s) 228, 458, 782
PsiI TTATAA 1 cut(s) 479
Psp5II RGGWCCY 3 cut(s) 228, 458, 782
Psp6I CCWGG 1 cut(s) 500
PspEI GGTNACC 1 cut(s) 556
PspGI CCWGG 1 cut(s) 500
PspN4I GGNNCC 5 cut(s) 229, 230, 460, 783, 858
PspPI GGNCC 3 cut(s) 228, 458, 782
PspPPI RGGWCCY 3 cut(s) 228, 458, 782
PstI CTGCAG 1 cut(s) 167
PsuI RGATCY 1 cut(s) 856
PvuII CAGCTG 1 cut(s) 371
RsaI GTAC 5 cut(s) 65, 123, 499, 644, 737
RsaNI GTAC 5 cut(s) 64, 122, 498, 643, 736
RseI CAYNNNNRTG 1 cut(s) 606
SaqAI TTAA 1 cut(s) 206
SatI GCNGC 1 cut(s) 372
Sau3AI GATC 1 cut(s) 856
Sau96I GGNCC 3 cut(s) 228, 458, 782
ScaI AGTACT 1 cut(s) 123
ScrFI CCNGG 2 cut(s) 299, 502
SduI GDGCHC 1 cut(s) 102
SfaNI GCATC 2 cut(s) 379, 586
SfcI CTRYAG 2 cut(s) 163, 801
SfuI TTCGAA 1 cut(s) 470
SinI GGWCC 3 cut(s) 228, 458, 782
SmiMI CAYNNNNRTG 1 cut(s) 606
SmlI CTYRAG 1 cut(s) 675
SmoI CTYRAG 1 cut(s) 675
SpeI ACTAGT 1 cut(s) 605
Sse9I AATT 6 cut(s) 145, 277, 441, 466, 612, 634
SsiI CCGC 2 cut(s) 553, 652
SspMI CTAG 1 cut(s) 606
StyD4I CCNGG 2 cut(s) 297, 500
StyI CCWWGG 1 cut(s) 860
TaaI ACNGT 5 cut(s) 94, 211, 689, 740, 802
TaqI TCGA 4 cut(s) 344, 429, 452, 470
TasI AATT 6 cut(s) 145, 277, 441, 466, 612, 634
TatI WGTACW 2 cut(s) 121, 735
TfiI GAWTC 4 cut(s) 341, 524, 680, 806
Tru1I TTAA 1 cut(s) 206
Tru9I TTAA 1 cut(s) 206
TscAI CASTG 2 cut(s) 99, 773
TseI GCWGC 1 cut(s) 371
TspDTI ATGAA 3 cut(s) 60, 354, 798
TspRI CASTG 2 cut(s) 99, 773
VneI GTGCAC 1 cut(s) 98
VpaK11BI GGWCC 3 cut(s) 228, 458, 782
XapI RAATTY 3 cut(s) 277, 466, 634
XcmI CCANNNNNNNNNTGG 1 cut(s) 867
XspI CTAG 1 cut(s) 606
ZrmI AGTACT 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.