RLG00000010302

psbP domain-containing protein 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0008432
Physical Location & Seq
Forward (+)
402597 .. 405624
3028 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010302

Sequence Viewer

Length: 879 bp
ATGGTTATTCTCTCTCCCTCTCTTTCTCTCTTCACATCCAATCACTTTCTTGTTCCTCCAAACCTCTTCTTCAGAGAGCACAACAGAGCAGTGGTGCACCAGAGCAAATGCAGGGTAGAGCATATACTTGAACCCTGCTCAAAACCCAATTTGCAATATGGGTTCTGCAGAAGAGAGTTATTGCTGTTTGGCCTTTCTTCTCCACTCTTAACAGTTTTGCCATCTTCAGGGTCCCTTGCAGAAGAAGATGTGAAAATGGCTTCGTTTGCTGATGAGATAAATTCTTATTCTTATCTCTACCCAGTGGAGTTGCAATCTAAGAAGGTCATCTTCAAATGGGTGGAATCGAGAAAGCCGGAACGCTATTCATCAGCTGCTCCATTATCTCCTGATGCACGCCTGCGCATTGTCTCTGAGCGTGTTGACATTATCGATAATCTCATAATTTCCATTTCGATAGGTCCCCCAAATTCAAAGATTATAAAATCACCCGACAAGAGTACCTGGACTGCAAAAGATGTTGCTGATTCTGTTTTGGCTGACAAGTCTGCATTGCGGGTTACCTCAACGCAGCGAATGGCTGAGAGTTCAGTTCTTGATGCACATACTAGTGAAATTGATGGTCAGCCATATTGGAATTTTGAGTACCTTGTCCGCAAAGCACCCACAAAAACTGCTCAAGAATCTAACAGTTACCGGCACTATGTGGCTTCAACAACCGAACGAGATGGTTATTTGTACTGTATAAACGCTTCAACTCTCAACAAGCAGTGGAACATTATGGGACCTATCTTGCAAAAGACTGTAGATTCATTTCACCTTCTCCCTCCCACAGAAAACTACGTTCCTCCATTCAAGGATCCATGGAGATTTTGGTGA

Protein Analysis

293

Amino Acids

33.23

Weight (kDa)

8.24

Isoelectric Point (pI)

50.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 86 - 273 9.7e-16 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 482
Acc16I TGCGCA 1 cut(s) 404
AciI CCGC 2 cut(s) 556, 655
AclWI GGATC 2 cut(s) 854, 867
AcsI RAATTY 3 cut(s) 280, 469, 637
AcuI CTGAAG 2 cut(s) 55, 210
AdeI CACNNNGTG 1 cut(s) 706
AfaI GTAC 3 cut(s) 502, 647, 740
AfiI CCNNNNNNNGG 1 cut(s) 227
AgsI TTSAA 6 cut(s) 131, 334, 474, 714, 756, 856
AhlI ACTAGT 1 cut(s) 608
AjnI CCWGG 1 cut(s) 503
AluBI AGCT 1 cut(s) 374
AluI AGCT 1 cut(s) 374
Alw21I GWGCWC 2 cut(s) 81, 99
Alw26I GTCTC 1 cut(s) 415
Alw44I GTGCAC 1 cut(s) 95
AlwI GGATC 2 cut(s) 854, 867
AoxI GGCC 1 cut(s) 190
ApaLI GTGCAC 1 cut(s) 95
ApeKI GCWGC 2 cut(s) 374, 571
ApoI RAATTY 3 cut(s) 280, 469, 637
AspLEI GCGC 1 cut(s) 405
AspS9I GGNCC 3 cut(s) 231, 461, 785
AsuHPI GGTGA 2 cut(s) 480, 809
AvaII GGWCC 3 cut(s) 231, 461, 785
BaeGI GKGCMC 1 cut(s) 99
BaeI ACNNNNGTAYC 2 cut(s) 484, 517
BamHI GGATCC 1 cut(s) 859
BarI GAAGNNNNNNTAC 2 cut(s) 736, 768
Bbv12I GWGCWC 2 cut(s) 81, 99
BbvI GCAGC 2 cut(s) 361, 583
BccI CCATC 3 cut(s) 229, 614, 722
BciT130I CCWGG 1 cut(s) 505
BcoDI GTCTC 1 cut(s) 415
BcuI ACTAGT 1 cut(s) 608
BfaI CTAG 1 cut(s) 609
BfmI CTRYAG 2 cut(s) 166, 804
BisI GCNGC 2 cut(s) 375, 572
BlsI GCNGC 2 cut(s) 376, 573
Bme1390I CCNGG 1 cut(s) 505
Bme18I GGWCC 3 cut(s) 231, 461, 785
BmgT120I GGNCC 3 cut(s) 231, 461, 785
BmiI GGNNCC 5 cut(s) 232, 233, 463, 786, 861
BmrFI CCNGG 1 cut(s) 505
BmrI ACTGGG 1 cut(s) 296
BmsI GCATC 2 cut(s) 382, 589
BmuI ACTGGG 1 cut(s) 296
BpuEI CTTGAG 1 cut(s) 663
Bsa29I ATCGAT 1 cut(s) 432
BsaJI CCNNGG 1 cut(s) 863
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse118I RCCGGY 1 cut(s) 696
Bse1I ACTGG 1 cut(s) 302
Bse3DI GCAATG 1 cut(s) 551
BseBI CCWGG 1 cut(s) 505
BseCI ATCGAT 1 cut(s) 432
BseDI CCNNGG 1 cut(s) 863
BseGI GGATG 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 227
BseMI GCAATG 1 cut(s) 551
BseMII CTCAG 2 cut(s) 405, 573
BseNI ACTGG 1 cut(s) 302
BseSI GKGCMC 1 cut(s) 99
BseXI GCAGC 2 cut(s) 361, 583
BshFI GGCC 1 cut(s) 192
BshVI ATCGAT 1 cut(s) 432
BsiHKAI GWGCWC 2 cut(s) 81, 99
BsiSI CCGG 2 cut(s) 356, 697
BslFI GGGAC 3 cut(s) 217, 447, 798
BslI CCNNNNNNNGG 1 cut(s) 227
BsmAI GTCTC 1 cut(s) 415
BsmFI GGGAC 3 cut(s) 217, 447, 798
BsnI GGCC 1 cut(s) 192
Bsp1286I GDGCHC 2 cut(s) 81, 99
Bsp143I GATC 1 cut(s) 859
Bsp19I CCATGG 1 cut(s) 863
BspACI CCGC 2 cut(s) 556, 655
BspANI GGCC 1 cut(s) 192
BspCNI CTCAG 2 cut(s) 406, 574
BspDI ATCGAT 1 cut(s) 432
BspLI GGNNCC 5 cut(s) 232, 233, 463, 786, 861
BspMAI CTGCAG 1 cut(s) 170
BspPI GGATC 2 cut(s) 854, 867
BsrDI GCAATG 1 cut(s) 551
BsrFI RCCGGY 1 cut(s) 696
BsrI ACTGG 1 cut(s) 302
BssAI RCCGGY 1 cut(s) 696
BssECI CCNNGG 1 cut(s) 863
BssMI GATC 1 cut(s) 859
BssT1I CCWWGG 1 cut(s) 863
Bst2UI CCWGG 1 cut(s) 505
Bst4CI ACNGT 4 cut(s) 214, 692, 743, 805
Bst6I CTCTTC 3 cut(s) 35, 71, 166
BstC8I GCNNGC 2 cut(s) 397, 401
BstDEI CTNAG 3 cut(s) 318, 414, 582
BstDSI CCRYGG 1 cut(s) 863
BstEII GGTNACC 1 cut(s) 559
BstF5I GGATG 1 cut(s) 35
BstHHI GCGC 1 cut(s) 405
BstKTI GATC 1 cut(s) 862
BstMAI GTCTC 1 cut(s) 415
BstMBI GATC 1 cut(s) 859
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstNI CCWGG 1 cut(s) 505
BstPI GGTNACC 1 cut(s) 559
BstSCI CCNGG 1 cut(s) 503
BstSFI CTRYAG 2 cut(s) 166, 804
BstSLI GKGCMC 1 cut(s) 99
BstV1I GCAGC 2 cut(s) 361, 583
BstX2I RGATCY 1 cut(s) 859
BstYI RGATCY 1 cut(s) 859
Bsu15I ATCGAT 1 cut(s) 432
BsuRI GGCC 1 cut(s) 192
BsuTUI ATCGAT 1 cut(s) 432
BtgI CCRYGG 1 cut(s) 863
BtsCI GGATG 1 cut(s) 35
BtsI GCAGTG 2 cut(s) 96, 776
BtsIMutI CAGTG 3 cut(s) 96, 309, 776
Cac8I GCNNGC 2 cut(s) 397, 401
CfoI GCGC 1 cut(s) 405
Cfr10I RCCGGY 1 cut(s) 696
Cfr13I GGNCC 3 cut(s) 231, 461, 785
ClaI ATCGAT 1 cut(s) 432
Csp6I GTAC 3 cut(s) 501, 646, 739
CviAII CATG 1 cut(s) 864
CviJI RGCY 8 cut(s) 192, 260, 355, 374, 539, 581, 628, 710
CviKI_1 RGCY 8 cut(s) 192, 260, 355, 374, 539, 581, 628, 710
CviQI GTAC 3 cut(s) 501, 646, 739
DdeI CTNAG 3 cut(s) 318, 414, 582
DpnI GATC 1 cut(s) 861
DpnII GATC 1 cut(s) 859
DraIII CACNNNGTG 1 cut(s) 706
Eam1104I CTCTTC 3 cut(s) 35, 71, 166
EarI CTCTTC 3 cut(s) 35, 71, 166
Eco130I CCWWGG 1 cut(s) 863
Eco47I GGWCC 3 cut(s) 231, 461, 785
Eco57I CTGAAG 2 cut(s) 55, 210
Eco91I GGTNACC 1 cut(s) 559
EcoO109I RGGNCCY 3 cut(s) 231, 461, 785
EcoO65I GGTNACC 1 cut(s) 559
EcoRII CCWGG 1 cut(s) 503
EcoT14I CCWWGG 1 cut(s) 863
ErhI CCWWGG 1 cut(s) 863
FaeI CATG 1 cut(s) 867
FalI AAGNNNNNCTT 2 cut(s) 314, 346
FaqI GGGAC 3 cut(s) 217, 447, 798
FatI CATG 1 cut(s) 863
FauI CCCGC 1 cut(s) 549
Fnu4HI GCNGC 2 cut(s) 375, 572
FokI GGATG 1 cut(s) 22
Fsp4HI GCNGC 2 cut(s) 375, 572
FspBI CTAG 1 cut(s) 609
FspI TGCGCA 1 cut(s) 404
GlaI GCGC 1 cut(s) 404
GluI GCNGC 2 cut(s) 375, 572
HaeIII GGCC 1 cut(s) 192
HapII CCGG 2 cut(s) 356, 697
HhaI GCGC 1 cut(s) 405
Hin1II CATG 1 cut(s) 867
Hin6I GCGC 1 cut(s) 403
HinP1I GCGC 1 cut(s) 403
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HinfI GANTC 4 cut(s) 344, 527, 683, 809
HpaII CCGG 2 cut(s) 356, 697
HphI GGTGA 2 cut(s) 480, 809
Hpy166II GTNNAC 2 cut(s) 97, 424
Hpy188I TCNGA 2 cut(s) 74, 415
Hpy188III TCNNGA 4 cut(s) 348, 389, 596, 680
Hpy8I GTNNAC 2 cut(s) 97, 424
HpyAV CCTTC 2 cut(s) 316, 830
HpyCH4III ACNGT 4 cut(s) 214, 692, 743, 805
HpyCH4IV ACGT 1 cut(s) 843
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpyF3I CTNAG 3 cut(s) 318, 414, 582
HpySE526I ACGT 1 cut(s) 843
Hsp92II CATG 1 cut(s) 867
HspAI GCGC 1 cut(s) 403
KflI GGGWCCC 1 cut(s) 231
Kzo9I GATC 1 cut(s) 859
LmnI GCTCC 1 cut(s) 382
Lsp1109I GCAGC 2 cut(s) 361, 583
LweI GCATC 2 cut(s) 382, 589
MaeI CTAG 1 cut(s) 609
MaeII ACGT 1 cut(s) 843
MaeIII GTNAC 2 cut(s) 559, 692
MalI GATC 1 cut(s) 861
MboI GATC 1 cut(s) 859
MboII GAAGA 9 cut(s) 22, 58, 61, 183, 189, 216, 254, 257, 322
MflI RGATCY 1 cut(s) 859
MhlI GDGCHC 2 cut(s) 81, 99
MluCI AATT 6 cut(s) 148, 280, 444, 469, 615, 637
MnlI CCTC 6 cut(s) 28, 66, 74, 574, 837, 858
MseI TTAA 1 cut(s) 209
MslI CAYNNNNRTG 1 cut(s) 609
MspA1I CMGCKG 1 cut(s) 374
MspI CCGG 2 cut(s) 356, 697
MspR9I CCNGG 1 cut(s) 505
MvaI CCWGG 1 cut(s) 505
MwoI GCNNNNNNNGC 1 cut(s) 266
NcoI CCATGG 1 cut(s) 863
NdeII GATC 1 cut(s) 859
NlaIII CATG 1 cut(s) 867
NlaIV GGNNCC 5 cut(s) 232, 233, 463, 786, 861
NsbI TGCGCA 1 cut(s) 404
PfeI GAWTC 4 cut(s) 344, 527, 683, 809
PkrI GCNGC 2 cut(s) 376, 573
PpuMI RGGWCCY 3 cut(s) 231, 461, 785
PsiI TTATAA 1 cut(s) 482
Psp5II RGGWCCY 3 cut(s) 231, 461, 785
Psp6I CCWGG 1 cut(s) 503
PspEI GGTNACC 1 cut(s) 559
PspGI CCWGG 1 cut(s) 503
PspN4I GGNNCC 5 cut(s) 232, 233, 463, 786, 861
PspPI GGNCC 3 cut(s) 231, 461, 785
PspPPI RGGWCCY 3 cut(s) 231, 461, 785
PstI CTGCAG 1 cut(s) 170
PsuI RGATCY 1 cut(s) 859
PvuII CAGCTG 1 cut(s) 374
RsaI GTAC 3 cut(s) 502, 647, 740
RsaNI GTAC 3 cut(s) 501, 646, 739
RseI CAYNNNNRTG 1 cut(s) 609
SaqAI TTAA 1 cut(s) 209
SatI GCNGC 2 cut(s) 375, 572
Sau3AI GATC 1 cut(s) 859
Sau96I GGNCC 3 cut(s) 231, 461, 785
ScrFI CCNGG 1 cut(s) 505
SduI GDGCHC 2 cut(s) 81, 99
SfaNI GCATC 2 cut(s) 382, 589
SfcI CTRYAG 2 cut(s) 166, 804
SinI GGWCC 3 cut(s) 231, 461, 785
SmiMI CAYNNNNRTG 1 cut(s) 609
SmlI CTYRAG 1 cut(s) 678
SmoI CTYRAG 1 cut(s) 678
SpeI ACTAGT 1 cut(s) 608
Sse9I AATT 6 cut(s) 148, 280, 444, 469, 615, 637
SsiI CCGC 2 cut(s) 556, 655
SspMI CTAG 1 cut(s) 609
StyD4I CCNGG 1 cut(s) 503
StyI CCWWGG 1 cut(s) 863
TaaI ACNGT 4 cut(s) 214, 692, 743, 805
TaiI ACGT 1 cut(s) 846
TaqI TCGA 3 cut(s) 347, 432, 455
TasI AATT 6 cut(s) 148, 280, 444, 469, 615, 637
TatI WGTACW 1 cut(s) 738
TfiI GAWTC 4 cut(s) 344, 527, 683, 809
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TscAI CASTG 3 cut(s) 96, 309, 776
TseI GCWGC 2 cut(s) 374, 571
TspDTI ATGAA 2 cut(s) 357, 801
TspRI CASTG 3 cut(s) 96, 309, 776
VneI GTGCAC 1 cut(s) 95
VpaK11BI GGWCC 3 cut(s) 231, 461, 785
XapI RAATTY 3 cut(s) 280, 469, 637
XcmI CCANNNNNNNNNTGG 1 cut(s) 870
XspI CTAG 1 cut(s) 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.