MD15G1115400.v1.1

psbP domain-containing protein 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0008432
Physical Location & Seq
Reverse (-)
8128300 .. 8130803
2504 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1115400.v1.1.491

Sequence Viewer

Length: 948 bp
ATGAGGCAACAGAAGGAAGAAGGCAAGAGAGAAAGAAAACTCAAAGCAAGGCAAAAGAAAGAAGAGAGCAACAAATACAATGGTGGTTCTTCTCTATCCTTCCCTCTCTCTCTTCACATCCAACCATCTTCTTCCTTCCAATCTCCTTCTCAGCAAGGTAGAGTTGTGATGCAGCAGAACAAATGGAAATTAAGTTCAAGTGCCAACTCAAAACCCAGTTTGGAAAATGGGGTTGGCAGAAGAGAGTTGCTCATGTTTGGCATTTCTGCTCCTGTTTTACTAGTCTCACCATCTCCAGGGTCCCTTGCAGAGGCAGACTTGAAAATGGCTCCATTTTTTGATGAAATAAATTCATATTCTTATCTATACCCAATGGAGTTGCCATCCAAGAAGGCCCTTTTCAAGTGGGTGGAATCGAGAAAGCCAGAGCGTTATTCATCAGCCGCACCATTATCTCCTGATGCACGCCTGCGCATTGTTTCTGAGCGCGTTGACATTGTTGATAACCTCATCATTTCCATTTCGATAGGTCCCCCGAATTCAAAGATTATAAAATCACAAGACAAGAGTACATGGACTGCAAAAGACGTTGCTGATTCTGTTTTGGCAGACAAGTCCGCATTGCGTGTCACCTCAACTCAGCGCCAGGCTGAGAGTCAAGTTCTTGATGCACACTCTGGTGAAATTGATGGTCGGCCATACTGGTATTATGAGTACCTTGTTCGCAAGGCACCCACAAAAACTGCTGACGAATCTACCAATTACAGACACTATATGGCTTCAACAACTGAACGAGATGGTTACTTTTACTCTATAAATGCTTCAACCCTCAACAAGCAATGGAACATAGTGGGGCCAATCTTGCAAAAAACAGTAGCTTCATTTCACCTTCTCCCTCCCACAGAAAACTATGTTCCTCCATACAAGGATCCATGGAGATTCTGGTGA

Protein Analysis

316

Amino Acids

35.73

Weight (kDa)

9.52

Isoelectric Point (pI)

54.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 110 - 296 6.3e-13 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 551
Acc16I TGCGCA 1 cut(s) 473
AccB1I GGYRCC 1 cut(s) 730
AccII CGCG 1 cut(s) 489
AciI CCGC 2 cut(s) 444, 618
AclWI GGATC 2 cut(s) 923, 936
AcoI YGGCCR 1 cut(s) 695
AcsI RAATTY 2 cut(s) 349, 538
AfaI GTAC 2 cut(s) 571, 716
AfiI CCNNNNNNNGG 2 cut(s) 296, 310
AgsI TTSAA 6 cut(s) 198, 322, 403, 543, 783, 825
AhlI ACTAGT 1 cut(s) 280
AjnI CCWGG 2 cut(s) 295, 645
AjuI GAANNNNNNNTTGG 2 cut(s) 216, 248
AleI CACNNNNGTG 1 cut(s) 678
AloI GAACNNNNNNTCC 2 cut(s) 178, 210
AluBI AGCT 1 cut(s) 878
AluI AGCT 1 cut(s) 878
Alw26I GTCTC 1 cut(s) 289
AlwI GGATC 2 cut(s) 923, 936
AoxI GGCC 3 cut(s) 393, 695, 854
ApeKI GCWGC 1 cut(s) 172
ApoI RAATTY 2 cut(s) 349, 538
AspLEI GCGC 3 cut(s) 474, 489, 645
AspS9I GGNCC 4 cut(s) 300, 394, 530, 854
AsuHPI GGTGA 4 cut(s) 279, 622, 692, 878
AvaII GGWCC 2 cut(s) 300, 530
BamHI GGATCC 1 cut(s) 928
BanI GGYRCC 1 cut(s) 730
BbvI GCAGC 1 cut(s) 184
BccI CCATC 5 cut(s) 133, 298, 391, 683, 791
BciT130I CCWGG 2 cut(s) 297, 647
BcoDI GTCTC 1 cut(s) 289
BcuI ACTAGT 1 cut(s) 280
BfaI CTAG 1 cut(s) 281
BfoI RGCGCY 1 cut(s) 646
BisI GCNGC 2 cut(s) 173, 444
BlsI GCNGC 2 cut(s) 174, 445
Bme1390I CCNGG 2 cut(s) 297, 647
Bme18I GGWCC 2 cut(s) 300, 530
BmgT120I GGNCC 4 cut(s) 300, 394, 530, 854
BmiI GGNNCC 7 cut(s) 301, 302, 330, 532, 732, 855, 930
BmrFI CCNGG 2 cut(s) 297, 647
BmrI ACTGGG 1 cut(s) 210
BmsI GCATC 3 cut(s) 159, 451, 658
BmuI ACTGGG 1 cut(s) 210
BplI GAGNNNNNCTC 2 cut(s) 234, 266
BpmI CTGGAG 1 cut(s) 279
BsaJI CCNNGG 2 cut(s) 296, 932
Bsc4I CCNNNNNNNGG 2 cut(s) 296, 310
Bse1I ACTGG 2 cut(s) 216, 707
Bse3DI GCAATG 2 cut(s) 620, 845
BseBI CCWGG 2 cut(s) 297, 647
BseDI CCNNGG 2 cut(s) 296, 932
BseGI GGATG 2 cut(s) 117, 383
BseLI CCNNNNNNNGG 2 cut(s) 296, 310
BseMI GCAATG 2 cut(s) 620, 845
BseMII CTCAG 4 cut(s) 164, 474, 642, 653
BseNI ACTGG 2 cut(s) 216, 707
BseXI GCAGC 1 cut(s) 184
Bsh1236I CGCG 1 cut(s) 489
BshFI GGCC 3 cut(s) 395, 697, 856
BshNI GGYRCC 1 cut(s) 730
BslFI GGGAC 2 cut(s) 286, 516
BslI CCNNNNNNNGG 2 cut(s) 296, 310
BsmAI GTCTC 1 cut(s) 289
BsmFI GGGAC 2 cut(s) 286, 516
BsnI GGCC 3 cut(s) 395, 697, 856
Bsp143I GATC 1 cut(s) 928
Bsp19I CCATGG 1 cut(s) 932
BspACI CCGC 2 cut(s) 444, 618
BspANI GGCC 3 cut(s) 395, 697, 856
BspCNI CTCAG 4 cut(s) 163, 475, 643, 652
BspFNI CGCG 1 cut(s) 489
BspLI GGNNCC 7 cut(s) 301, 302, 330, 532, 732, 855, 930
BspPI GGATC 2 cut(s) 923, 936
BspT107I GGYRCC 1 cut(s) 730
BsrDI GCAATG 2 cut(s) 620, 845
BsrI ACTGG 2 cut(s) 216, 707
BssECI CCNNGG 2 cut(s) 296, 932
BssMI GATC 1 cut(s) 928
BssT1I CCWWGG 1 cut(s) 932
Bst2UI CCWGG 2 cut(s) 297, 647
Bst4CI ACNGT 1 cut(s) 874
Bst6I CTCTTC 3 cut(s) 57, 117, 235
BstC8I GCNNGC 2 cut(s) 466, 470
BstDEI CTNAG 4 cut(s) 150, 483, 639, 651
BstDSI CCRYGG 1 cut(s) 932
BstENI CCTNNNNNAGG 1 cut(s) 308
BstF5I GGATG 2 cut(s) 117, 383
BstFNI CGCG 1 cut(s) 489
BstH2I RGCGCY 1 cut(s) 646
BstHHI GCGC 3 cut(s) 474, 489, 645
BstKTI GATC 1 cut(s) 931
BstMAI GTCTC 1 cut(s) 289
BstMBI GATC 1 cut(s) 928
BstMWI GCNNNNNNNGC 1 cut(s) 862
BstNI CCWGG 2 cut(s) 297, 647
BstSCI CCNGG 2 cut(s) 295, 645
BstUI CGCG 1 cut(s) 489
BstV1I GCAGC 1 cut(s) 184
BstX2I RGATCY 1 cut(s) 928
BstYI RGATCY 1 cut(s) 928
BsuRI GGCC 3 cut(s) 395, 697, 856
BtgI CCRYGG 1 cut(s) 932
BtsCI GGATG 2 cut(s) 117, 383
Cac8I GCNNGC 2 cut(s) 466, 470
CfoI GCGC 3 cut(s) 474, 489, 645
Cfr13I GGNCC 4 cut(s) 300, 394, 530, 854
Csp6I GTAC 2 cut(s) 570, 715
CviAII CATG 3 cut(s) 253, 573, 933
CviJI RGCY 9 cut(s) 329, 395, 424, 443, 650, 697, 779, 856, 878
CviKI_1 RGCY 9 cut(s) 329, 395, 424, 443, 650, 697, 779, 856, 878
CviQI GTAC 2 cut(s) 570, 715
DdeI CTNAG 4 cut(s) 150, 483, 639, 651
DpnI GATC 1 cut(s) 930
DpnII GATC 1 cut(s) 928
EaeI YGGCCR 1 cut(s) 695
Eam1104I CTCTTC 3 cut(s) 57, 117, 235
EarI CTCTTC 3 cut(s) 57, 117, 235
Eco130I CCWWGG 1 cut(s) 932
Eco47I GGWCC 2 cut(s) 300, 530
EcoNI CCTNNNNNAGG 1 cut(s) 308
EcoO109I RGGNCCY 3 cut(s) 300, 394, 530
EcoRI GAATTC 1 cut(s) 538
EcoRII CCWGG 2 cut(s) 295, 645
EcoT14I CCWWGG 1 cut(s) 932
ErhI CCWWGG 1 cut(s) 932
FaeI CATG 3 cut(s) 256, 576, 936
FaqI GGGAC 2 cut(s) 286, 516
FatI CATG 3 cut(s) 252, 572, 932
Fnu4HI GCNGC 2 cut(s) 173, 444
FokI GGATG 2 cut(s) 104, 370
Fsp4HI GCNGC 2 cut(s) 173, 444
FspBI CTAG 1 cut(s) 281
FspI TGCGCA 1 cut(s) 473
GlaI GCGC 3 cut(s) 473, 488, 644
GluI GCNGC 2 cut(s) 173, 444
GsuI CTGGAG 1 cut(s) 279
HaeII RGCGCY 1 cut(s) 646
HaeIII GGCC 3 cut(s) 395, 697, 856
HhaI GCGC 3 cut(s) 474, 489, 645
Hin1II CATG 3 cut(s) 256, 576, 936
Hin6I GCGC 3 cut(s) 472, 487, 643
HinP1I GCGC 3 cut(s) 472, 487, 643
HincII GTYRAC 1 cut(s) 493
HindII GTYRAC 1 cut(s) 493
HinfI GANTC 5 cut(s) 413, 596, 655, 752, 939
HphI GGTGA 4 cut(s) 279, 622, 692, 878
Hpy166II GTNNAC 1 cut(s) 493
Hpy188I TCNGA 1 cut(s) 484
Hpy188III TCNNGA 3 cut(s) 417, 458, 665
Hpy8I GTNNAC 1 cut(s) 493
HpyAV CCTTC 7 cut(s) 7, 14, 109, 145, 156, 385, 899
HpyCH4III ACNGT 1 cut(s) 874
HpyCH4IV ACGT 1 cut(s) 588
HpyCH4V TGCA 6 cut(s) 172, 308, 464, 581, 671, 865
HpyF10VI GCNNNNNNNGC 1 cut(s) 862
HpyF3I CTNAG 4 cut(s) 150, 483, 639, 651
HpySE526I ACGT 1 cut(s) 588
Hsp92II CATG 3 cut(s) 256, 576, 936
HspAI GCGC 3 cut(s) 472, 487, 643
KflI GGGWCCC 1 cut(s) 300
Kzo9I GATC 1 cut(s) 928
LmnI GCTCC 2 cut(s) 274, 334
Lsp1109I GCAGC 1 cut(s) 184
LweI GCATC 3 cut(s) 159, 451, 658
MaeI CTAG 1 cut(s) 281
MaeII ACGT 1 cut(s) 588
MaeIII GTNAC 2 cut(s) 628, 800
MalI GATC 1 cut(s) 930
MboI GATC 1 cut(s) 928
MboII GAAGA 7 cut(s) 29, 74, 81, 104, 120, 123, 252
MflI RGATCY 1 cut(s) 928
MluCI AATT 5 cut(s) 188, 349, 538, 684, 760
MlyI GAGTC 1 cut(s) 664
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 7 cut(s) 114, 304, 518, 643, 839, 906, 927
MseI TTAA 1 cut(s) 191
MslI CAYNNNNRTG 1 cut(s) 678
MspR9I CCNGG 2 cut(s) 297, 647
MvaI CCWGG 2 cut(s) 297, 647
MvnI CGCG 1 cut(s) 489
MwoI GCNNNNNNNGC 1 cut(s) 862
NcoI CCATGG 1 cut(s) 932
NdeII GATC 1 cut(s) 928
NlaIII CATG 3 cut(s) 256, 576, 936
NlaIV GGNNCC 7 cut(s) 301, 302, 330, 532, 732, 855, 930
NmuCI GTSAC 1 cut(s) 628
NsbI TGCGCA 1 cut(s) 473
OliI CACNNNNGTG 1 cut(s) 678
PfeI GAWTC 4 cut(s) 413, 596, 752, 939
PkrI GCNGC 2 cut(s) 174, 445
PleI GAGTC 1 cut(s) 663
PpsI GAGTC 1 cut(s) 663
PpuMI RGGWCCY 2 cut(s) 300, 530
PsiI TTATAA 1 cut(s) 551
Psp5II RGGWCCY 2 cut(s) 300, 530
Psp6I CCWGG 2 cut(s) 295, 645
PspGI CCWGG 2 cut(s) 295, 645
PspN4I GGNNCC 7 cut(s) 301, 302, 330, 532, 732, 855, 930
PspPI GGNCC 4 cut(s) 300, 394, 530, 854
PspPPI RGGWCCY 2 cut(s) 300, 530
PsuI RGATCY 1 cut(s) 928
RsaI GTAC 2 cut(s) 571, 716
RsaNI GTAC 2 cut(s) 570, 715
RseI CAYNNNNRTG 1 cut(s) 678
SaqAI TTAA 1 cut(s) 191
SatI GCNGC 2 cut(s) 173, 444
Sau3AI GATC 1 cut(s) 928
Sau96I GGNCC 4 cut(s) 300, 394, 530, 854
SchI GAGTC 1 cut(s) 664
ScrFI CCNGG 2 cut(s) 297, 647
SetI ASST 8 cut(s) 160, 510, 532, 591, 635, 720, 880, 891
SfaNI GCATC 3 cut(s) 159, 451, 658
SinI GGWCC 2 cut(s) 300, 530
SmiMI CAYNNNNRTG 1 cut(s) 678
SpeI ACTAGT 1 cut(s) 280
Sse9I AATT 5 cut(s) 188, 349, 538, 684, 760
SsiI CCGC 2 cut(s) 444, 618
SspMI CTAG 1 cut(s) 281
StyD4I CCNGG 2 cut(s) 295, 645
StyI CCWWGG 1 cut(s) 932
TaaI ACNGT 1 cut(s) 874
TaiI ACGT 1 cut(s) 591
TaqI TCGA 2 cut(s) 416, 524
TasI AATT 5 cut(s) 188, 349, 538, 684, 760
TatI WGTACW 1 cut(s) 569
TauI GCSGC 1 cut(s) 446
TfiI GAWTC 4 cut(s) 413, 596, 752, 939
Tru1I TTAA 1 cut(s) 191
Tru9I TTAA 1 cut(s) 191
TseFI GTSAC 1 cut(s) 628
TseI GCWGC 1 cut(s) 172
Tsp45I GTSAC 1 cut(s) 628
TspDTI ATGAA 4 cut(s) 342, 357, 426, 870
VpaK11BI GGWCC 2 cut(s) 300, 530
XagI CCTNNNNNAGG 1 cut(s) 308
XapI RAATTY 2 cut(s) 349, 538
XcmI CCANNNNNNNNNTGG 1 cut(s) 939
XspI CTAG 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.