Rroxscaffold_7G00156540

psbP domain-containing protein 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0008432
Physical Location & Seq
Forward (+)
366990 .. 370229
3240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00156540.1

Sequence Viewer

Length: 882 bp
ATGGTTATTCTCTCTCCCTCTCTTTCTCTCTTCACATCCAATCACTTTCTTGTTCCTCCAAACCTCTTCTTCAGAGAGCACAGCAGAACAGTGGTGCACCAGCAGAGCAAATGCAGAGCAGAGCACATACTTGAACCATGCTCAAAACCCAATTTCCAAAATGGGTTCTGCAGAAGAGAGTTATTGCTGTTTGGCCTTTCTTCTCCACTCTTAACAGTTTTGCCATCTTCAGGGTCCCTTGCAGAAGAAGATGTGAAAATGGCTTCGTTTGCTGATGAGATCAATTCTTATTCTTATCTCTACCCGGTGGAGTTGCAATCTAAGAAGGTCATCTTCAAATGGGTGGAATCGAGAAAGCCTGAACGCTATTCATCAGCTGCTCCATTATCTCCTGATGCACGCCTGCGCATTGTCTCTGAGCGTGTTGACATTATCGATAATCTCATAATTTCCATTTCGATAGGTCCCCCAAATTCGAAGATTATAAAATCACCGGACAAGAGTACCTGGACTGCAAAAGATGTTGCTGATTCTGTTTTGGCTGACAAGTCTGCATTGCGGGTTACCTCAACTCAGCGAATGGCTGAGAGTTCAATTCTTGATGCACATACTAGTGAAATTGATGGTCAGCCATATTGGAATTTTGAGTACCTTGTCCGCAAAGCACCCACAAAAACTGCTCAAGAATCTAACAGTTACCGGCACTATGTGGCTTCAACAACCGAACGAGATGGTTATTTGTACTGTATAAACGCTTCAACTCTCAACAAGCAGTGGAACATTATGGGACCTATCTTGCAAAAGACTGTAGATTCATTTCACCTTCTCCCTCCCACAGAAAACTATGTTCCTCCATTCAAGGATCCATGGAGATTTTGGTGA

Protein Analysis

293

Amino Acids

33.33

Weight (kDa)

8.25

Isoelectric Point (pI)

50.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 87 - 274 8.3e-16 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 485
Acc16I TGCGCA 1 cut(s) 407
AciI CCGC 2 cut(s) 559, 658
AclWI GGATC 2 cut(s) 857, 870
AcsI RAATTY 2 cut(s) 472, 640
AcuI CTGAAG 2 cut(s) 55, 213
AdeI CACNNNGTG 1 cut(s) 709
AfaI GTAC 3 cut(s) 505, 650, 743
AfiI CCNNNNNNNGG 1 cut(s) 230
AgsI TTSAA 6 cut(s) 134, 337, 594, 717, 759, 859
AhlI ACTAGT 1 cut(s) 611
AjnI CCWGG 1 cut(s) 506
AluBI AGCT 1 cut(s) 377
AluI AGCT 1 cut(s) 377
Alw21I GWGCWC 3 cut(s) 81, 99, 126
Alw26I GTCTC 1 cut(s) 418
Alw44I GTGCAC 1 cut(s) 95
AlwI GGATC 2 cut(s) 857, 870
AoxI GGCC 1 cut(s) 193
ApaLI GTGCAC 1 cut(s) 95
ApeKI GCWGC 1 cut(s) 377
ApoI RAATTY 2 cut(s) 472, 640
AspLEI GCGC 1 cut(s) 408
AspS9I GGNCC 3 cut(s) 234, 464, 788
AsuC2I CCSGG 1 cut(s) 305
AsuHPI GGTGA 2 cut(s) 483, 812
AsuII TTCGAA 1 cut(s) 476
AvaII GGWCC 3 cut(s) 234, 464, 788
BaeGI GKGCMC 1 cut(s) 99
BaeI ACNNNNGTAYC 2 cut(s) 487, 520
BamHI GGATCC 1 cut(s) 862
BarI GAAGNNNNNNTAC 2 cut(s) 739, 771
Bbv12I GWGCWC 3 cut(s) 81, 99, 126
BbvI GCAGC 1 cut(s) 364
BccI CCATC 3 cut(s) 232, 617, 725
BciT130I CCWGG 1 cut(s) 508
BcnI CCSGG 1 cut(s) 305
BcoDI GTCTC 1 cut(s) 418
BcuI ACTAGT 1 cut(s) 611
BfaI CTAG 1 cut(s) 612
BfmI CTRYAG 2 cut(s) 169, 807
BisI GCNGC 1 cut(s) 378
BlsI GCNGC 1 cut(s) 379
Bme1390I CCNGG 2 cut(s) 305, 508
Bme18I GGWCC 3 cut(s) 234, 464, 788
BmgT120I GGNCC 3 cut(s) 234, 464, 788
BmiI GGNNCC 5 cut(s) 235, 236, 466, 789, 864
BmrFI CCNGG 2 cut(s) 305, 508
BmsI GCATC 2 cut(s) 385, 592
Bpu14I TTCGAA 1 cut(s) 476
BpuEI CTTGAG 1 cut(s) 666
BpuMI CCSGG 1 cut(s) 305
Bsa29I ATCGAT 1 cut(s) 435
BsaJI CCNNGG 1 cut(s) 866
BsaWI WCCGGW 1 cut(s) 493
Bsc4I CCNNNNNNNGG 1 cut(s) 230
Bse118I RCCGGY 1 cut(s) 699
Bse3DI GCAATG 1 cut(s) 554
BseBI CCWGG 1 cut(s) 508
BseCI ATCGAT 1 cut(s) 435
BseDI CCNNGG 1 cut(s) 866
BseGI GGATG 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 230
BseMI GCAATG 1 cut(s) 554
BseMII CTCAG 3 cut(s) 408, 576, 587
BseSI GKGCMC 1 cut(s) 99
BseXI GCAGC 1 cut(s) 364
BshFI GGCC 1 cut(s) 195
BshVI ATCGAT 1 cut(s) 435
BsiHKAI GWGCWC 3 cut(s) 81, 99, 126
BsiSI CCGG 3 cut(s) 305, 494, 700
BslFI GGGAC 3 cut(s) 220, 450, 801
BslI CCNNNNNNNGG 1 cut(s) 230
BsmAI GTCTC 1 cut(s) 418
BsmFI GGGAC 3 cut(s) 220, 450, 801
BsnI GGCC 1 cut(s) 195
Bsp119I TTCGAA 1 cut(s) 476
Bsp1286I GDGCHC 3 cut(s) 81, 99, 126
Bsp143I GATC 2 cut(s) 279, 862
Bsp19I CCATGG 1 cut(s) 866
BspACI CCGC 2 cut(s) 559, 658
BspANI GGCC 1 cut(s) 195
BspCNI CTCAG 3 cut(s) 409, 577, 586
BspDI ATCGAT 1 cut(s) 435
BspLI GGNNCC 5 cut(s) 235, 236, 466, 789, 864
BspMAI CTGCAG 1 cut(s) 173
BspPI GGATC 2 cut(s) 857, 870
BspT104I TTCGAA 1 cut(s) 476
BsrDI GCAATG 1 cut(s) 554
BsrFI RCCGGY 1 cut(s) 699
BssAI RCCGGY 1 cut(s) 699
BssECI CCNNGG 1 cut(s) 866
BssMI GATC 2 cut(s) 279, 862
BssT1I CCWWGG 1 cut(s) 866
Bst2UI CCWGG 1 cut(s) 508
Bst4CI ACNGT 5 cut(s) 91, 217, 695, 746, 808
Bst6I CTCTTC 3 cut(s) 35, 71, 169
BstBI TTCGAA 1 cut(s) 476
BstC8I GCNNGC 2 cut(s) 400, 404
BstDEI CTNAG 4 cut(s) 321, 417, 573, 585
BstDSI CCRYGG 1 cut(s) 866
BstEII GGTNACC 1 cut(s) 562
BstF5I GGATG 1 cut(s) 35
BstHHI GCGC 1 cut(s) 408
BstKTI GATC 2 cut(s) 282, 865
BstMAI GTCTC 1 cut(s) 418
BstMBI GATC 2 cut(s) 279, 862
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstNI CCWGG 1 cut(s) 508
BstPI GGTNACC 1 cut(s) 562
BstSCI CCNGG 2 cut(s) 303, 506
BstSFI CTRYAG 2 cut(s) 169, 807
BstSLI GKGCMC 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 364
BstX2I RGATCY 1 cut(s) 862
BstYI RGATCY 1 cut(s) 862
Bsu15I ATCGAT 1 cut(s) 435
BsuRI GGCC 1 cut(s) 195
BsuTUI ATCGAT 1 cut(s) 435
BtgI CCRYGG 1 cut(s) 866
BtsCI GGATG 1 cut(s) 35
BtsI GCAGTG 1 cut(s) 779
BtsIMutI CAGTG 2 cut(s) 96, 779
Cac8I GCNNGC 2 cut(s) 400, 404
CfoI GCGC 1 cut(s) 408
Cfr10I RCCGGY 1 cut(s) 699
Cfr13I GGNCC 3 cut(s) 234, 464, 788
ClaI ATCGAT 1 cut(s) 435
Csp6I GTAC 3 cut(s) 504, 649, 742
CviAII CATG 2 cut(s) 138, 867
CviJI RGCY 8 cut(s) 195, 263, 358, 377, 542, 584, 631, 713
CviKI_1 RGCY 8 cut(s) 195, 263, 358, 377, 542, 584, 631, 713
CviQI GTAC 3 cut(s) 504, 649, 742
DdeI CTNAG 4 cut(s) 321, 417, 573, 585
DpnI GATC 2 cut(s) 281, 864
DpnII GATC 2 cut(s) 279, 862
DraIII CACNNNGTG 1 cut(s) 709
Eam1104I CTCTTC 3 cut(s) 35, 71, 169
EarI CTCTTC 3 cut(s) 35, 71, 169
Eco130I CCWWGG 1 cut(s) 866
Eco47I GGWCC 3 cut(s) 234, 464, 788
Eco57I CTGAAG 2 cut(s) 55, 213
Eco91I GGTNACC 1 cut(s) 562
EcoO109I RGGNCCY 3 cut(s) 234, 464, 788
EcoO65I GGTNACC 1 cut(s) 562
EcoRII CCWGG 1 cut(s) 506
EcoT14I CCWWGG 1 cut(s) 866
ErhI CCWWGG 1 cut(s) 866
FaeI CATG 2 cut(s) 141, 870
FalI AAGNNNNNCTT 2 cut(s) 317, 349
FaqI GGGAC 3 cut(s) 220, 450, 801
FatI CATG 2 cut(s) 137, 866
FauI CCCGC 1 cut(s) 552
Fnu4HI GCNGC 1 cut(s) 378
FokI GGATG 1 cut(s) 22
Fsp4HI GCNGC 1 cut(s) 378
FspBI CTAG 1 cut(s) 612
FspI TGCGCA 1 cut(s) 407
GlaI GCGC 1 cut(s) 407
GluI GCNGC 1 cut(s) 378
HaeIII GGCC 1 cut(s) 195
HapII CCGG 3 cut(s) 305, 494, 700
HhaI GCGC 1 cut(s) 408
Hin1II CATG 2 cut(s) 141, 870
Hin6I GCGC 1 cut(s) 406
HinP1I GCGC 1 cut(s) 406
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HinfI GANTC 4 cut(s) 347, 530, 686, 812
HpaII CCGG 3 cut(s) 305, 494, 700
HphI GGTGA 2 cut(s) 483, 812
Hpy166II GTNNAC 2 cut(s) 97, 427
Hpy188I TCNGA 2 cut(s) 74, 418
Hpy188III TCNNGA 4 cut(s) 351, 392, 599, 683
Hpy8I GTNNAC 2 cut(s) 97, 427
HpyAV CCTTC 2 cut(s) 319, 833
HpyCH4III ACNGT 5 cut(s) 91, 217, 695, 746, 808
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 4 cut(s) 321, 417, 573, 585
Hsp92II CATG 2 cut(s) 141, 870
HspAI GCGC 1 cut(s) 406
KflI GGGWCCC 1 cut(s) 234
Kzo9I GATC 2 cut(s) 279, 862
LmnI GCTCC 1 cut(s) 385
Lsp1109I GCAGC 1 cut(s) 364
LweI GCATC 2 cut(s) 385, 592
MaeI CTAG 1 cut(s) 612
MaeIII GTNAC 2 cut(s) 562, 695
MalI GATC 2 cut(s) 281, 864
MboI GATC 2 cut(s) 279, 862
MflI RGATCY 1 cut(s) 862
MhlI GDGCHC 3 cut(s) 81, 99, 126
MluCI AATT 7 cut(s) 151, 283, 447, 472, 594, 618, 640
MnlI CCTC 6 cut(s) 28, 66, 74, 577, 840, 861
MseI TTAA 1 cut(s) 212
MslI CAYNNNNRTG 1 cut(s) 612
MspA1I CMGCKG 1 cut(s) 377
MspI CCGG 3 cut(s) 305, 494, 700
MspR9I CCNGG 2 cut(s) 305, 508
MvaI CCWGG 1 cut(s) 508
MwoI GCNNNNNNNGC 1 cut(s) 269
NciI CCSGG 1 cut(s) 305
NcoI CCATGG 1 cut(s) 866
NdeII GATC 2 cut(s) 279, 862
NlaIII CATG 2 cut(s) 141, 870
NlaIV GGNNCC 5 cut(s) 235, 236, 466, 789, 864
NsbI TGCGCA 1 cut(s) 407
NspV TTCGAA 1 cut(s) 476
PfeI GAWTC 4 cut(s) 347, 530, 686, 812
PkrI GCNGC 1 cut(s) 379
PpuMI RGGWCCY 3 cut(s) 234, 464, 788
PsiI TTATAA 1 cut(s) 485
Psp5II RGGWCCY 3 cut(s) 234, 464, 788
Psp6I CCWGG 1 cut(s) 506
PspEI GGTNACC 1 cut(s) 562
PspGI CCWGG 1 cut(s) 506
PspN4I GGNNCC 5 cut(s) 235, 236, 466, 789, 864
PspPI GGNCC 3 cut(s) 234, 464, 788
PspPPI RGGWCCY 3 cut(s) 234, 464, 788
PstI CTGCAG 1 cut(s) 173
PsuI RGATCY 1 cut(s) 862
PvuII CAGCTG 1 cut(s) 377
RsaI GTAC 3 cut(s) 505, 650, 743
RsaNI GTAC 3 cut(s) 504, 649, 742
RseI CAYNNNNRTG 1 cut(s) 612
SaqAI TTAA 1 cut(s) 212
SatI GCNGC 1 cut(s) 378
Sau3AI GATC 2 cut(s) 279, 862
Sau96I GGNCC 3 cut(s) 234, 464, 788
ScrFI CCNGG 2 cut(s) 305, 508
SduI GDGCHC 3 cut(s) 81, 99, 126
SetI ASST 9 cut(s) 66, 330, 379, 466, 509, 569, 654, 793, 825
SfaNI GCATC 2 cut(s) 385, 592
SfcI CTRYAG 2 cut(s) 169, 807
SfuI TTCGAA 1 cut(s) 476
SinI GGWCC 3 cut(s) 234, 464, 788
SmiMI CAYNNNNRTG 1 cut(s) 612
SmlI CTYRAG 1 cut(s) 681
SmoI CTYRAG 1 cut(s) 681
SpeI ACTAGT 1 cut(s) 611
Sse9I AATT 7 cut(s) 151, 283, 447, 472, 594, 618, 640
SsiI CCGC 2 cut(s) 559, 658
SspMI CTAG 1 cut(s) 612
StyD4I CCNGG 2 cut(s) 303, 506
StyI CCWWGG 1 cut(s) 866
TaaI ACNGT 5 cut(s) 91, 217, 695, 746, 808
TaqI TCGA 4 cut(s) 350, 435, 458, 476
TasI AATT 7 cut(s) 151, 283, 447, 472, 594, 618, 640
TatI WGTACW 1 cut(s) 741
TfiI GAWTC 4 cut(s) 347, 530, 686, 812
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
TscAI CASTG 2 cut(s) 96, 779
TseI GCWGC 1 cut(s) 377
TspDTI ATGAA 2 cut(s) 360, 804
TspRI CASTG 2 cut(s) 96, 779
VneI GTGCAC 1 cut(s) 95
VpaK11BI GGWCC 3 cut(s) 234, 464, 788
XapI RAATTY 2 cut(s) 472, 640
XcmI CCANNNNNNNNNTGG 1 cut(s) 873
XspI CTAG 1 cut(s) 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.