Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0008432

Physical Location & Seq

Genomic Coordinates Reverse (-)

68551146 .. 68554540

Gene Structure 3395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG532400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGTTATTCTCTCTCCCTCTCTTTCTCTCTTCACCTCCAATCCAAACCTCTTCTTCTTCAGGTACTCTTCATCTCCATCTCTTACTTCAACAGTGGTGCACCAGCAGAGCAAATGCAGAGTACTTGAACCATGCTCAAAACCCAATTTCCAAAATGGGTTCTGCAGAAGAGAGTTATTGCTGTTTGGCCTTTCTTCTCCCCTCTTAACAGTTTTGCCATCTTCAGGGTCCCTTGCAGAAGAAGATGTGAAAATGGCTTCGTTTGCTGATGACATAAATTCTTATTCTTATCTCTACCCGGTGGAGTTGCAATCTAAGAAGGTCATCTTCAAATGGGTGGAATCGAGAAAGCCGGAACGCTATTCATCAGCTGCTCCATTATCTCCTGATGCACGCCTGCGCATTGTCTCTGAGCGTGTTGACATTATCGATAATCTCATAATTTCCATTTCGATAGGTCCCCCAAATTCGAAGATTATAAAATCACCGGACAAGAGTACCTGGACTGCAAAAGATGTTGCTGATTCTGTTTTGGCTGACAAGTCTGCATTGCGGGTTACCTCAACTCAGCGAATGGCTGAGAGTTCAGTTCTTGATGCACATACTAGTGAAATTGATGGTCAGCCATATTGGAATTTTGAGTACCTTGTCCGCAAAGCACCCACAAAAACTGCTCAAGAATCTAACAGTTACCGGCACTATGTGGCTTCAACAACCGAACGAGATGGTTATTTGTACTGTATAAACGCTTCAACTCTCAACAAGCAGTGGAACATTGTAACTCTCTCTCTCTCTCTCTGTCAACACTTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

271

Amino Acids

30.45

Weight (kDa)

8.51

Isoelectric Point (pI)

44.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbP	PF01789	85 - 260	1.5e-11	PsbP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11450 AT5G11450
fragaria_vesca	FvH4_2g30170 FvH4_2g30170 FvH4_2g30170
malus_domestica	MD08G1136300.v1.1 MD15G1115400.v1.1
prunus_persica	Prupe.1G466600_v2.0.a1 Prupe.1G466600_v2.0.a1 Prupe.1G466600_v2.0.a1
pyrus_communis	pycom15g10390
rosa_chinensis	RchiOBHm_Chr6g0312741
rosa_laevigata	RLG00000010302
rosa_multiflora	Rmu_ssc0000412.1_g000013
rosa_roxburghii	Rroxscaffold_7G00156540
rosa_rugosa	Rorug06G0399000 Rorug06G0399000 Rorug06G0399100
rosa_samantha	Rh6AG516200 Rh6BG527500 Rh6CG532400 Rh6DG518500
rosa_wichuraiana	Rw6G044850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	479
Acc16I	TGCGCA	1 cut(s)	401
AciI	CCGC	2 cut(s)	553, 652
AcsI	RAATTY	3 cut(s)	277, 466, 634
AcuI	CTGAAG	2 cut(s)	43, 207
AdeI	CACNNNGTG	1 cut(s)	703
AfaI	GTAC	5 cut(s)	65, 123, 499, 644, 737
AfiI	CCNNNNNNNGG	1 cut(s)	224
AgsI	TTSAA	5 cut(s)	90, 128, 331, 711, 753
AhlI	ACTAGT	1 cut(s)	605
AjnI	CCWGG	1 cut(s)	500
AluBI	AGCT	1 cut(s)	371
AluI	AGCT	1 cut(s)	371
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	1 cut(s)	412
Alw44I	GTGCAC	1 cut(s)	98
AoxI	GGCC	1 cut(s)	187
ApaLI	GTGCAC	1 cut(s)	98
ApeKI	GCWGC	1 cut(s)	371
ApoI	RAATTY	3 cut(s)	277, 466, 634
AspLEI	GCGC	1 cut(s)	402
AspS9I	GGNCC	2 cut(s)	228, 458
AsuC2I	CCSGG	1 cut(s)	299
AsuHPI	GGTGA	2 cut(s)	25, 477
AsuII	TTCGAA	1 cut(s)	470
AvaII	GGWCC	2 cut(s)	228, 458
BaeGI	GKGCMC	1 cut(s)	102
BaeI	ACNNNNGTAYC	2 cut(s)	481, 514
BarI	GAAGNNNNNNTAC	2 cut(s)	733, 765
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	358
BccI	CCATC	4 cut(s)	85, 226, 611, 719
BciT130I	CCWGG	1 cut(s)	502
BcnI	CCSGG	1 cut(s)	299
BcoDI	GTCTC	1 cut(s)	412
BcuI	ACTAGT	1 cut(s)	605
BfaI	CTAG	1 cut(s)	606
BfmI	CTRYAG	1 cut(s)	163
BisI	GCNGC	1 cut(s)	372
BlsI	GCNGC	1 cut(s)	373
BmcAI	AGTACT	1 cut(s)	123
Bme1390I	CCNGG	2 cut(s)	299, 502
Bme18I	GGWCC	2 cut(s)	228, 458
BmgT120I	GGNCC	2 cut(s)	228, 458
BmiI	GGNNCC	3 cut(s)	229, 230, 460
BmrFI	CCNGG	2 cut(s)	299, 502
BmsI	GCATC	2 cut(s)	379, 586
Bpu14I	TTCGAA	1 cut(s)	470
BpuEI	CTTGAG	1 cut(s)	660
BpuMI	CCSGG	1 cut(s)	299
Bsa29I	ATCGAT	1 cut(s)	429
BsaWI	WCCGGW	1 cut(s)	487
Bsc4I	CCNNNNNNNGG	1 cut(s)	224
Bse118I	RCCGGY	1 cut(s)	693
Bse3DI	GCAATG	1 cut(s)	548
BseBI	CCWGG	1 cut(s)	502
BseCI	ATCGAT	1 cut(s)	429
BseLI	CCNNNNNNNGG	1 cut(s)	224
BseMI	GCAATG	1 cut(s)	548
BseMII	CTCAG	3 cut(s)	402, 570, 581
BseSI	GKGCMC	1 cut(s)	102
BseXI	GCAGC	1 cut(s)	358
BshFI	GGCC	1 cut(s)	189
BshVI	ATCGAT	1 cut(s)	429
BsiHKAI	GWGCWC	1 cut(s)	102
BsiSI	CCGG	4 cut(s)	299, 353, 488, 694
BslFI	GGGAC	2 cut(s)	214, 444
BslI	CCNNNNNNNGG	1 cut(s)	224
BsmAI	GTCTC	1 cut(s)	412
BsmFI	GGGAC	2 cut(s)	214, 444
BsnI	GGCC	1 cut(s)	189
Bsp119I	TTCGAA	1 cut(s)	470
Bsp1286I	GDGCHC	1 cut(s)	102
BspACI	CCGC	2 cut(s)	553, 652
BspANI	GGCC	1 cut(s)	189
BspCNI	CTCAG	3 cut(s)	403, 571, 580
BspDI	ATCGAT	1 cut(s)	429
BspLI	GGNNCC	3 cut(s)	229, 230, 460
BspMAI	CTGCAG	1 cut(s)	167
BspT104I	TTCGAA	1 cut(s)	470
BsrDI	GCAATG	1 cut(s)	548
BsrFI	RCCGGY	1 cut(s)	693
BssAI	RCCGGY	1 cut(s)	693
Bst2UI	CCWGG	1 cut(s)	502
Bst4CI	ACNGT	4 cut(s)	94, 211, 689, 740
Bst6I	CTCTTC	4 cut(s)	35, 56, 73, 163
BstBI	TTCGAA	1 cut(s)	470
BstC8I	GCNNGC	2 cut(s)	394, 398
BstDEI	CTNAG	4 cut(s)	315, 411, 567, 579
BstEII	GGTNACC	1 cut(s)	556
BstHHI	GCGC	1 cut(s)	402
BstMAI	GTCTC	1 cut(s)	412
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstNI	CCWGG	1 cut(s)	502
BstPI	GGTNACC	1 cut(s)	556
BstSCI	CCNGG	2 cut(s)	297, 500
BstSFI	CTRYAG	1 cut(s)	163
BstSLI	GKGCMC	1 cut(s)	102
BstV1I	GCAGC	1 cut(s)	358
Bsu15I	ATCGAT	1 cut(s)	429
BsuRI	GGCC	1 cut(s)	189
BsuTUI	ATCGAT	1 cut(s)	429
BtsI	GCAGTG	1 cut(s)	773
BtsIMutI	CAGTG	2 cut(s)	99, 773
Cac8I	GCNNGC	2 cut(s)	394, 398
CfoI	GCGC	1 cut(s)	402
Cfr10I	RCCGGY	1 cut(s)	693
Cfr13I	GGNCC	2 cut(s)	228, 458
ClaI	ATCGAT	1 cut(s)	429
Csp6I	GTAC	5 cut(s)	64, 122, 498, 643, 736
CviAII	CATG	1 cut(s)	132
CviJI	RGCY	8 cut(s)	189, 257, 352, 371, 536, 578, 625, 707
CviKI_1	RGCY	8 cut(s)	189, 257, 352, 371, 536, 578, 625, 707
CviQI	GTAC	5 cut(s)	64, 122, 498, 643, 736
DdeI	CTNAG	4 cut(s)	315, 411, 567, 579
DraIII	CACNNNGTG	1 cut(s)	703
Eam1104I	CTCTTC	4 cut(s)	35, 56, 73, 163
EarI	CTCTTC	4 cut(s)	35, 56, 73, 163
Eco47I	GGWCC	2 cut(s)	228, 458
Eco57I	CTGAAG	2 cut(s)	43, 207
Eco91I	GGTNACC	1 cut(s)	556
EcoO109I	RGGNCCY	2 cut(s)	228, 458
EcoO65I	GGTNACC	1 cut(s)	556
EcoRII	CCWGG	1 cut(s)	500
FaeI	CATG	1 cut(s)	135
FaiI	YATR	8 cut(s)	133, 275, 440, 479, 603, 628, 702, 743
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FaqI	GGGAC	2 cut(s)	214, 444
FatI	CATG	1 cut(s)	131
FauI	CCCGC	1 cut(s)	546
Fnu4HI	GCNGC	1 cut(s)	372
Fsp4HI	GCNGC	1 cut(s)	372
FspBI	CTAG	1 cut(s)	606
FspI	TGCGCA	1 cut(s)	401
GlaI	GCGC	1 cut(s)	401
GluI	GCNGC	1 cut(s)	372
HaeIII	GGCC	1 cut(s)	189
HapII	CCGG	4 cut(s)	299, 353, 488, 694
HhaI	GCGC	1 cut(s)	402
Hin1II	CATG	1 cut(s)	135
Hin6I	GCGC	1 cut(s)	400
HinP1I	GCGC	1 cut(s)	400
HincII	GTYRAC	2 cut(s)	421, 803
HindII	GTYRAC	2 cut(s)	421, 803
HinfI	GANTC	3 cut(s)	341, 524, 680
HpaII	CCGG	4 cut(s)	299, 353, 488, 694
HphI	GGTGA	2 cut(s)	25, 477
Hpy166II	GTNNAC	3 cut(s)	100, 421, 803
Hpy188I	TCNGA	1 cut(s)	412
Hpy188III	TCNNGA	4 cut(s)	345, 386, 593, 677
Hpy8I	GTNNAC	3 cut(s)	100, 421, 803
HpyAV	CCTTC	1 cut(s)	313
HpyCH4III	ACNGT	4 cut(s)	94, 211, 689, 740
HpyCH4V	TGCA	9 cut(s)	100, 117, 165, 236, 310, 392, 509, 548, 599
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpyF3I	CTNAG	4 cut(s)	315, 411, 567, 579
Hsp92II	CATG	1 cut(s)	135
HspAI	GCGC	1 cut(s)	400
KflI	GGGWCCC	1 cut(s)	228
LmnI	GCTCC	1 cut(s)	379
Lsp1109I	GCAGC	1 cut(s)	358
LweI	GCATC	2 cut(s)	379, 586
MaeI	CTAG	1 cut(s)	606
MaeIII	GTNAC	3 cut(s)	556, 689, 778
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	6 cut(s)	145, 277, 441, 466, 612, 634
MnlI	CCTC	5 cut(s)	28, 46, 59, 212, 571
MseI	TTAA	2 cut(s)	206, 814
MslI	CAYNNNNRTG	1 cut(s)	606
MspA1I	CMGCKG	1 cut(s)	371
MspI	CCGG	4 cut(s)	299, 353, 488, 694
MspR9I	CCNGG	2 cut(s)	299, 502
MvaI	CCWGG	1 cut(s)	502
MwoI	GCNNNNNNNGC	1 cut(s)	263
NciI	CCSGG	1 cut(s)	299
NlaIII	CATG	1 cut(s)	135
NlaIV	GGNNCC	3 cut(s)	229, 230, 460
NsbI	TGCGCA	1 cut(s)	401
NspV	TTCGAA	1 cut(s)	470
PfeI	GAWTC	3 cut(s)	341, 524, 680
PkrI	GCNGC	1 cut(s)	373
PpuMI	RGGWCCY	2 cut(s)	228, 458
PsiI	TTATAA	1 cut(s)	479
Psp5II	RGGWCCY	2 cut(s)	228, 458
Psp6I	CCWGG	1 cut(s)	500
PspEI	GGTNACC	1 cut(s)	556
PspGI	CCWGG	1 cut(s)	500
PspN4I	GGNNCC	3 cut(s)	229, 230, 460
PspPI	GGNCC	2 cut(s)	228, 458
PspPPI	RGGWCCY	2 cut(s)	228, 458
PstI	CTGCAG	1 cut(s)	167
PvuII	CAGCTG	1 cut(s)	371
RsaI	GTAC	5 cut(s)	65, 123, 499, 644, 737
RsaNI	GTAC	5 cut(s)	64, 122, 498, 643, 736
RseI	CAYNNNNRTG	1 cut(s)	606
SaqAI	TTAA	2 cut(s)	206, 814
SatI	GCNGC	1 cut(s)	372
Sau96I	GGNCC	2 cut(s)	228, 458
ScaI	AGTACT	1 cut(s)	123
ScrFI	CCNGG	2 cut(s)	299, 502
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	9 cut(s)	38, 51, 65, 324, 373, 460, 503, 563, 648
SfaNI	GCATC	2 cut(s)	379, 586
SfcI	CTRYAG	1 cut(s)	163
SfuI	TTCGAA	1 cut(s)	470
SinI	GGWCC	2 cut(s)	228, 458
SmiMI	CAYNNNNRTG	1 cut(s)	606
SmlI	CTYRAG	1 cut(s)	675
SmoI	CTYRAG	1 cut(s)	675
SpeI	ACTAGT	1 cut(s)	605
Sse9I	AATT	6 cut(s)	145, 277, 441, 466, 612, 634
SsiI	CCGC	2 cut(s)	553, 652
SspMI	CTAG	1 cut(s)	606
StyD4I	CCNGG	2 cut(s)	297, 500
TaaI	ACNGT	4 cut(s)	94, 211, 689, 740
TaqI	TCGA	4 cut(s)	344, 429, 452, 470
TasI	AATT	6 cut(s)	145, 277, 441, 466, 612, 634
TatI	WGTACW	2 cut(s)	121, 735
TfiI	GAWTC	3 cut(s)	341, 524, 680
Tru1I	TTAA	2 cut(s)	206, 814
Tru9I	TTAA	2 cut(s)	206, 814
TscAI	CASTG	2 cut(s)	99, 773
TseI	GCWGC	1 cut(s)	371
TspDTI	ATGAA	2 cut(s)	60, 354
TspRI	CASTG	2 cut(s)	99, 773
VneI	GTGCAC	1 cut(s)	98
VpaK11BI	GGWCC	2 cut(s)	228, 458
XapI	RAATTY	3 cut(s)	277, 466, 634
XspI	CTAG	1 cut(s)	606
ZrmI	AGTACT	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.