Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000412.1

Orthogroup ID

OG0008432

Physical Location & Seq

Genomic Coordinates Reverse (-)

99490 .. 101429

Gene Structure 1940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000412.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

atggttattctctctccctctctttctctcttcacatccaaatccaatcactttcttgttcctccaaacctcttcttcttcagagagcacaacagagcagtggcgcaccagcagagcaaatgctcaaaacccaatttccattatgggttttgcagaagagacttattgctgtttggcctttcttctccactcttaacagttttgccatcttcagggtcccttgcagaagaagatgtgaaaatggcttcgtttgctgatgacataaattcttattcttatctctacccgctggagttgcaatctaagaaggtcatcttcaaatgggtggaatcgagaaagccggaacgctattcatcagctgctccattatctcctgatgcacgccttcgcattgtctctgagcgtgttgacattatcgataatctcataatttctatttcgataggtcccccaaattcaaagattttaaaatcaccggacaagagtacctggactgcaaaagatgttgctgattctgttttggctgacaagtctgcattgcgggttacctcaactcagcgaatggctgagagttcagttcttgatgcacatactagtcaaattgatggtcagccatattggaattttgagtaccttgtccgcaaagcacccacaaaaactgctcaagaatctaacagttaccggcactatgtggcttcaacaaccgaacgagatggtggggcaaatgcttcttctgtgtacatctattctaccgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

252

Amino Acids

28.16

Weight (kDa)

8.94

Isoelectric Point (pI)

44.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11450 AT5G11450
fragaria_vesca	FvH4_2g30170 FvH4_2g30170 FvH4_2g30170
malus_domestica	MD08G1136300.v1.1 MD15G1115400.v1.1
prunus_persica	Prupe.1G466600_v2.0.a1 Prupe.1G466600_v2.0.a1 Prupe.1G466600_v2.0.a1
pyrus_communis	pycom15g10390
rosa_chinensis	RchiOBHm_Chr6g0312741
rosa_laevigata	RLG00000010302
rosa_multiflora	Rmu_ssc0000412.1_g000013
rosa_roxburghii	Rroxscaffold_7G00156540
rosa_rugosa	Rorug06G0399000 Rorug06G0399000 Rorug06G0399100
rosa_samantha	Rh6AG516200 Rh6BG527500 Rh6CG532400 Rh6DG518500
rosa_wichuraiana	Rw6G044850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	287, 541, 640, 753
AcsI	RAATTY	3 cut(s)	265, 454, 622
AcuI	CTGAAG	2 cut(s)	64, 195
AdeI	CACNNNGTG	1 cut(s)	691
AfaI	GTAC	3 cut(s)	487, 632, 740
AfiI	CCNNNNNNNGG	1 cut(s)	212
AgsI	TTSAA	3 cut(s)	319, 459, 699
AhlI	ACTAGT	1 cut(s)	593
AjnI	CCWGG	1 cut(s)	488
AluBI	AGCT	1 cut(s)	359
AluI	AGCT	1 cut(s)	359
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	2 cut(s)	153, 400
AoxI	GGCC	1 cut(s)	175
ApeKI	GCWGC	1 cut(s)	359
ApoI	RAATTY	3 cut(s)	265, 454, 622
ArsI	GACNNNNNNTTYG	2 cut(s)	592, 624
AspLEI	GCGC	1 cut(s)	106
AspS9I	GGNCC	2 cut(s)	216, 446
AsuHPI	GGTGA	1 cut(s)	465
AvaII	GGWCC	2 cut(s)	216, 446
BaeI	ACNNNNGTAYC	2 cut(s)	469, 502
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	346
BccI	CCATC	3 cut(s)	214, 599, 707
BciT130I	CCWGG	1 cut(s)	490
BcoDI	GTCTC	2 cut(s)	153, 400
BcuI	ACTAGT	1 cut(s)	593
BfaI	CTAG	1 cut(s)	594
BisI	GCNGC	1 cut(s)	360
BlsI	GCNGC	1 cut(s)	361
Bme1390I	CCNGG	1 cut(s)	490
Bme18I	GGWCC	2 cut(s)	216, 446
BmgT120I	GGNCC	2 cut(s)	216, 446
BmiI	GGNNCC	3 cut(s)	217, 218, 448
BmrFI	CCNGG	1 cut(s)	490
BmsI	GCATC	2 cut(s)	367, 574
BpmI	CTGGAG	1 cut(s)	311
BpuEI	CTTGAG	1 cut(s)	648
Bsa29I	ATCGAT	1 cut(s)	417
BsaWI	WCCGGW	1 cut(s)	475
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
Bse118I	RCCGGY	1 cut(s)	681
Bse3DI	GCAATG	1 cut(s)	536
BseBI	CCWGG	1 cut(s)	490
BseCI	ATCGAT	1 cut(s)	417
BseGI	GGATG	1 cut(s)	35
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseMI	GCAATG	1 cut(s)	536
BseMII	CTCAG	3 cut(s)	390, 558, 569
BseXI	GCAGC	1 cut(s)	346
BshFI	GGCC	1 cut(s)	177
BshVI	ATCGAT	1 cut(s)	417
BsiHKAI	GWGCWC	1 cut(s)	90
BsiSI	CCGG	3 cut(s)	341, 476, 682
BslFI	GGGAC	2 cut(s)	202, 432
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmAI	GTCTC	2 cut(s)	153, 400
BsmFI	GGGAC	2 cut(s)	202, 432
BsnI	GGCC	1 cut(s)	177
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp1407I	TGTACA	1 cut(s)	738
BspACI	CCGC	4 cut(s)	287, 541, 640, 753
BspANI	GGCC	1 cut(s)	177
BspCNI	CTCAG	3 cut(s)	391, 559, 568
BspDI	ATCGAT	1 cut(s)	417
BspLI	GGNNCC	3 cut(s)	217, 218, 448
BsrDI	GCAATG	1 cut(s)	536
BsrFI	RCCGGY	1 cut(s)	681
BsrGI	TGTACA	1 cut(s)	738
BssAI	RCCGGY	1 cut(s)	681
Bst2UI	CCWGG	1 cut(s)	490
Bst4CI	ACNGT	2 cut(s)	199, 677
Bst6I	CTCTTC	3 cut(s)	35, 77, 151
BstAUI	TGTACA	1 cut(s)	738
BstC8I	GCNNGC	1 cut(s)	382
BstDEI	CTNAG	4 cut(s)	303, 399, 555, 567
BstEII	GGTNACC	1 cut(s)	544
BstF5I	GGATG	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	106
BstMAI	GTCTC	2 cut(s)	153, 400
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 295
BstNI	CCWGG	1 cut(s)	490
BstPI	GGTNACC	1 cut(s)	544
BstSCI	CCNGG	1 cut(s)	488
BstV1I	GCAGC	1 cut(s)	346
Bsu15I	ATCGAT	1 cut(s)	417
BsuRI	GGCC	1 cut(s)	177
BsuTUI	ATCGAT	1 cut(s)	417
BtsCI	GGATG	1 cut(s)	35
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	382
CfoI	GCGC	1 cut(s)	106
Cfr10I	RCCGGY	1 cut(s)	681
Cfr13I	GGNCC	2 cut(s)	216, 446
ClaI	ATCGAT	1 cut(s)	417
Csp6I	GTAC	3 cut(s)	486, 631, 739
CviJI	RGCY	8 cut(s)	177, 245, 340, 359, 524, 566, 613, 695
CviKI_1	RGCY	8 cut(s)	177, 245, 340, 359, 524, 566, 613, 695
CviQI	GTAC	3 cut(s)	486, 631, 739
DdeI	CTNAG	4 cut(s)	303, 399, 555, 567
DraI	TTTAAA	1 cut(s)	468
DraIII	CACNNNGTG	1 cut(s)	691
Eam1104I	CTCTTC	3 cut(s)	35, 77, 151
EarI	CTCTTC	3 cut(s)	35, 77, 151
Eco47I	GGWCC	2 cut(s)	216, 446
Eco57I	CTGAAG	2 cut(s)	64, 195
Eco91I	GGTNACC	1 cut(s)	544
EcoO109I	RGGNCCY	2 cut(s)	216, 446
EcoO65I	GGTNACC	1 cut(s)	544
EcoRII	CCWGG	1 cut(s)	488
FaiI	YATR	6 cut(s)	144, 263, 428, 591, 616, 690
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FaqI	GGGAC	2 cut(s)	202, 432
FauI	CCCGC	2 cut(s)	294, 534
Fnu4HI	GCNGC	1 cut(s)	360
FokI	GGATG	1 cut(s)	22
Fsp4HI	GCNGC	1 cut(s)	360
FspBI	CTAG	1 cut(s)	594
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	1 cut(s)	360
GsuI	CTGGAG	1 cut(s)	311
HaeIII	GGCC	1 cut(s)	177
HapII	CCGG	3 cut(s)	341, 476, 682
HhaI	GCGC	1 cut(s)	106
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HinfI	GANTC	3 cut(s)	329, 512, 668
HpaII	CCGG	3 cut(s)	341, 476, 682
HphI	GGTGA	1 cut(s)	465
Hpy166II	GTNNAC	2 cut(s)	409, 739
Hpy188I	TCNGA	2 cut(s)	83, 400
Hpy188III	TCNNGA	4 cut(s)	333, 374, 581, 665
Hpy8I	GTNNAC	2 cut(s)	409, 739
HpyAV	CCTTC	2 cut(s)	301, 395
HpyCH4III	ACNGT	2 cut(s)	199, 677
HpyCH4V	TGCA	7 cut(s)	153, 224, 298, 380, 497, 536, 587
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 295
HpyF3I	CTNAG	4 cut(s)	303, 399, 555, 567
HspAI	GCGC	1 cut(s)	104
KflI	GGGWCCC	1 cut(s)	216
LmnI	GCTCC	1 cut(s)	367
LpnPI	CCDG	9 cut(s)	122, 198, 275, 354, 387, 475, 489, 502, 695
Lsp1109I	GCAGC	1 cut(s)	346
LweI	GCATC	2 cut(s)	367, 574
MaeI	CTAG	1 cut(s)	594
MaeIII	GTNAC	2 cut(s)	544, 677
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	6 cut(s)	133, 265, 429, 454, 600, 622
MnlI	CCTC	4 cut(s)	28, 72, 80, 559
MseI	TTAA	2 cut(s)	194, 467
MspA1I	CMGCKG	2 cut(s)	289, 359
MspI	CCGG	3 cut(s)	341, 476, 682
MspR9I	CCNGG	1 cut(s)	490
MvaI	CCWGG	1 cut(s)	490
MwoI	GCNNNNNNNGC	2 cut(s)	251, 295
NlaIV	GGNNCC	3 cut(s)	217, 218, 448
PfeI	GAWTC	3 cut(s)	329, 512, 668
PkrI	GCNGC	1 cut(s)	361
PpuMI	RGGWCCY	2 cut(s)	216, 446
Psp5II	RGGWCCY	2 cut(s)	216, 446
Psp6I	CCWGG	1 cut(s)	488
PspEI	GGTNACC	1 cut(s)	544
PspGI	CCWGG	1 cut(s)	488
PspN4I	GGNNCC	3 cut(s)	217, 218, 448
PspPI	GGNCC	2 cut(s)	216, 446
PspPPI	RGGWCCY	2 cut(s)	216, 446
PvuII	CAGCTG	1 cut(s)	359
RsaI	GTAC	3 cut(s)	487, 632, 740
RsaNI	GTAC	3 cut(s)	486, 631, 739
SaqAI	TTAA	2 cut(s)	194, 467
SatI	GCNGC	1 cut(s)	360
Sau96I	GGNCC	2 cut(s)	216, 446
ScrFI	CCNGG	1 cut(s)	490
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	7 cut(s)	72, 312, 361, 448, 491, 551, 636
SfaNI	GCATC	2 cut(s)	367, 574
SinI	GGWCC	2 cut(s)	216, 446
SmlI	CTYRAG	1 cut(s)	663
SmoI	CTYRAG	1 cut(s)	663
SpeI	ACTAGT	1 cut(s)	593
Sse9I	AATT	6 cut(s)	133, 265, 429, 454, 600, 622
SsiI	CCGC	4 cut(s)	287, 541, 640, 753
SspMI	CTAG	1 cut(s)	594
StyD4I	CCNGG	1 cut(s)	488
TaaI	ACNGT	2 cut(s)	199, 677
TaqI	TCGA	3 cut(s)	332, 417, 440
TasI	AATT	6 cut(s)	133, 265, 429, 454, 600, 622
TatI	WGTACW	1 cut(s)	738
TfiI	GAWTC	3 cut(s)	329, 512, 668
Tru1I	TTAA	2 cut(s)	194, 467
Tru9I	TTAA	2 cut(s)	194, 467
TscAI	CASTG	1 cut(s)	105
TseI	GCWGC	1 cut(s)	359
TspDTI	ATGAA	1 cut(s)	342
TspRI	CASTG	1 cut(s)	105
VpaK11BI	GGWCC	2 cut(s)	216, 446
XapI	RAATTY	3 cut(s)	265, 454, 622
XspI	CTAG	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.