Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008432

Physical Location & Seq

Genomic Coordinates Forward (+)

54402854 .. 54405277

Gene Structure 2424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0399000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCTTCGACCAGTGCTTTATCCTCCTCGCGCCTTTCCAGCTTTCACCGACTCACCGACCATCACTCTTTCCGTGAAGTGAGCTCATATCCAGGCAGTCCAATAGTATCCTGGCCTGGTATTAAGACTGCGAGGACGGCCCGATCATCCCGTGTTTATGGCTTATTTGGAGGGAAAAAGGATAACAATGAAAAGGGTGATGATAAGGCTGGAATATTCGGTAATATGCAAAATCTGTATGAAACAGTTAAGAAAGCCCAAAATGTAGTACAAGTTGAAGCAGTGCGTGTGCAGAAAGAGCTTGCTGCGGCCGAGTTTGATGGTTACTGTGAAGGTGAGATAATAAAGGTAACGCTTTCTGGTAACCAGCAGCCAGTACGCACAGAGATAACCGAGGCTGCTATGGAACTAGGAGCCGAAAAAGTCTCTCTTTTGGTTACTGAAGCATACAAAGACGCACACCAGAAGAGTGTCGTGGCCATGAAGGAGAGAATGAGTAACCTTGCTCAGAGTTTAGGAATGCCACCAGGCCTTGGCGAACTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

182

Amino Acids

19.81

Weight (kDa)

8.61

Isoelectric Point (pI)

29.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YbaB_DNA_bd	PF02575	84 - 171	6.4e-14	YbaB/EbfC DNA-binding family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11450 AT5G11450
fragaria_vesca	FvH4_2g30170 FvH4_2g30170 FvH4_2g30170
malus_domestica	MD08G1136300.v1.1 MD15G1115400.v1.1
prunus_persica	Prupe.1G466600_v2.0.a1 Prupe.1G466600_v2.0.a1 Prupe.1G466600_v2.0.a1
pyrus_communis	pycom15g10390
rosa_chinensis	RchiOBHm_Chr6g0312741
rosa_laevigata	RLG00000010302
rosa_multiflora	Rmu_ssc0000412.1_g000013
rosa_roxburghii	Rroxscaffold_7G00156540
rosa_rugosa	Rorug06G0399000 Rorug06G0399000 Rorug06G0399100
rosa_samantha	Rh6AG516200 Rh6BG527500 Rh6CG532400 Rh6DG518500
rosa_wichuraiana	Rw6G044850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	533
AccII	CGCG	1 cut(s)	31
AciI	CCGC	1 cut(s)	308
AcoI	YGGCCR	2 cut(s)	309, 477
AcuI	CTGAAG	1 cut(s)	462
AfaI	GTAC	2 cut(s)	270, 378
AfiI	CCNNNNNNNGG	1 cut(s)	533
AgsI	TTSAA	1 cut(s)	278
AjnI	CCWGG	4 cut(s)	91, 110, 115, 526
AluBI	AGCT	3 cut(s)	42, 84, 301
AluI	AGCT	3 cut(s)	42, 84, 301
Alw21I	GWGCWC	1 cut(s)	86
Alw26I	GTCTC	1 cut(s)	430
AoxI	GGCC	5 cut(s)	113, 138, 309, 477, 529
ApeKI	GCWGC	3 cut(s)	305, 370, 398
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	1 cut(s)	139
AsuHPI	GGTGA	4 cut(s)	38, 46, 209, 347
BalI	TGGCCA	1 cut(s)	479
BanII	GRGCYC	1 cut(s)	86
Bbv12I	GWGCWC	1 cut(s)	86
BbvI	GCAGC	3 cut(s)	292, 382, 385
BccI	CCATC	2 cut(s)	69, 314
BceAI	ACGGC	1 cut(s)	153
BciT130I	CCWGG	4 cut(s)	93, 112, 117, 528
BciVI	GTATCC	1 cut(s)	118
BcoDI	GTCTC	1 cut(s)	430
BfaI	CTAG	1 cut(s)	410
BfuI	GTATCC	1 cut(s)	118
BisI	GCNGC	4 cut(s)	306, 309, 371, 399
BlsI	GCNGC	4 cut(s)	307, 310, 372, 400
Bme1390I	CCNGG	4 cut(s)	93, 112, 117, 528
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	1 cut(s)	415
BmrFI	CCNGG	4 cut(s)	93, 112, 117, 528
BsaJI	CCNNGG	2 cut(s)	393, 532
Bsc4I	CCNNNNNNNGG	1 cut(s)	533
Bse1I	ACTGG	2 cut(s)	12, 374
BseBI	CCWGG	4 cut(s)	93, 112, 117, 528
BseDI	CCNNGG	2 cut(s)	393, 532
BseGI	GGATG	1 cut(s)	146
BseLI	CCNNNNNNNGG	1 cut(s)	533
BseMII	CTCAG	1 cut(s)	521
BseNI	ACTGG	2 cut(s)	12, 374
BseRI	GAGGAG	1 cut(s)	16
BseX3I	CGGCCG	1 cut(s)	309
BseXI	GCAGC	3 cut(s)	292, 382, 385
BsgI	GTGCAG	1 cut(s)	311
Bsh1236I	CGCG	1 cut(s)	31
Bsh1285I	CGRYCG	1 cut(s)	312
BshFI	GGCC	5 cut(s)	115, 140, 311, 479, 531
BsiEI	CGRYCG	1 cut(s)	312
BsiHKAI	GWGCWC	1 cut(s)	86
BslI	CCNNNNNNNGG	1 cut(s)	533
BsmAI	GTCTC	1 cut(s)	430
BsmI	GAATGC	1 cut(s)	525
BsnI	GGCC	5 cut(s)	115, 140, 311, 479, 531
Bsp1286I	GDGCHC	1 cut(s)	86
Bsp143I	GATC	1 cut(s)	143
BspACI	CCGC	1 cut(s)	308
BspANI	GGCC	5 cut(s)	115, 140, 311, 479, 531
BspCNI	CTCAG	1 cut(s)	520
BspFNI	CGCG	1 cut(s)	31
BspLI	GGNNCC	1 cut(s)	415
BsrI	ACTGG	2 cut(s)	12, 374
BssECI	CCNNGG	2 cut(s)	393, 532
BssMI	GATC	1 cut(s)	143
BssT1I	CCWWGG	1 cut(s)	532
Bst2UI	CCWGG	4 cut(s)	93, 112, 117, 528
Bst4CI	ACNGT	2 cut(s)	247, 329
Bst6I	CTCTTC	1 cut(s)	461
BstC8I	GCNNGC	1 cut(s)	303
BstDEI	CTNAG	1 cut(s)	507
BstEII	GGTNACC	1 cut(s)	362
BstF5I	GGATG	1 cut(s)	146
BstFNI	CGCG	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	1 cut(s)	146
BstMAI	GTCTC	1 cut(s)	430
BstMBI	GATC	1 cut(s)	143
BstMCI	CGRYCG	1 cut(s)	312
BstMWI	GCNNNNNNNGC	3 cut(s)	39, 137, 298
BstNI	CCWGG	4 cut(s)	93, 112, 117, 528
BstPI	GGTNACC	1 cut(s)	362
BstSCI	CCNGG	4 cut(s)	91, 110, 115, 526
BstUI	CGCG	1 cut(s)	31
BstV1I	GCAGC	3 cut(s)	292, 382, 385
BstZI	CGGCCG	1 cut(s)	309
BsuI	GTATCC	1 cut(s)	118
BsuRI	GGCC	5 cut(s)	115, 140, 311, 479, 531
BtsCI	GGATG	1 cut(s)	146
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	2 cut(s)	19, 288
Cac8I	GCNNGC	1 cut(s)	303
CfoI	GCGC	1 cut(s)	33
Cfr13I	GGNCC	1 cut(s)	139
CseI	GACGC	1 cut(s)	464
Csp6I	GTAC	2 cut(s)	269, 377
CviAII	CATG	1 cut(s)	481
CviQI	GTAC	2 cut(s)	269, 377
DdeI	CTNAG	1 cut(s)	507
DpnI	GATC	1 cut(s)	145
DpnII	GATC	1 cut(s)	143
EaeI	YGGCCR	2 cut(s)	309, 477
EagI	CGGCCG	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	461
EarI	CTCTTC	1 cut(s)	461
Ecl136II	GAGCTC	1 cut(s)	84
EclXI	CGGCCG	1 cut(s)	309
Eco130I	CCWWGG	1 cut(s)	532
Eco147I	AGGCCT	1 cut(s)	531
Eco24I	GRGCYC	1 cut(s)	86
Eco52I	CGGCCG	1 cut(s)	309
Eco53kI	GAGCTC	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	462
Eco91I	GGTNACC	1 cut(s)	362
EcoICRI	GAGCTC	1 cut(s)	84
EcoO65I	GGTNACC	1 cut(s)	362
EcoRII	CCWGG	4 cut(s)	91, 110, 115, 526
EcoT14I	CCWWGG	1 cut(s)	532
EcoT38I	GRGCYC	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	532
FaeI	CATG	1 cut(s)	484
FaiI	YATR	7 cut(s)	88, 159, 227, 240, 404, 448, 482
FalI	AAGNNNNNCTT	2 cut(s)	414, 446
FatI	CATG	1 cut(s)	480
Fnu4HI	GCNGC	4 cut(s)	306, 309, 371, 399
FokI	GGATG	1 cut(s)	133
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	4 cut(s)	306, 309, 371, 399
FspBI	CTAG	1 cut(s)	410
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	4 cut(s)	306, 309, 371, 399
HaeIII	GGCC	5 cut(s)	115, 140, 311, 479, 531
HgaI	GACGC	1 cut(s)	464
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	1 cut(s)	484
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HinfI	GANTC	1 cut(s)	51
HphI	GGTGA	4 cut(s)	38, 46, 209, 347
Hpy188I	TCNGA	1 cut(s)	510
HpyAV	CCTTC	2 cut(s)	326, 478
HpyCH4III	ACNGT	2 cut(s)	247, 329
HpyCH4V	TGCA	2 cut(s)	229, 292
HpyF10VI	GCNNNNNNNGC	3 cut(s)	39, 137, 298
HpyF3I	CTNAG	1 cut(s)	507
Hsp92II	CATG	1 cut(s)	484
HspAI	GCGC	1 cut(s)	31
Kzo9I	GATC	1 cut(s)	143
LmnI	GCTCC	1 cut(s)	413
Lsp1109I	GCAGC	3 cut(s)	292, 382, 385
MaeI	CTAG	1 cut(s)	410
MaeIII	GTNAC	5 cut(s)	323, 349, 362, 436, 497
MalI	GATC	1 cut(s)	145
MboI	GATC	1 cut(s)	143
MboII	GAAGA	1 cut(s)	478
MhlI	GDGCHC	1 cut(s)	86
MlsI	TGGCCA	1 cut(s)	479
MluNI	TGGCCA	1 cut(s)	479
MlyI	GAGTC	1 cut(s)	45
MnlI	CCTC	5 cut(s)	34, 37, 126, 164, 388
Mox20I	TGGCCA	1 cut(s)	479
MscI	TGGCCA	1 cut(s)	479
MseI	TTAA	2 cut(s)	123, 249
Msp20I	TGGCCA	1 cut(s)	479
MspR9I	CCNGG	4 cut(s)	93, 112, 117, 528
Mva1269I	GAATGC	1 cut(s)	525
MvaI	CCWGG	4 cut(s)	93, 112, 117, 528
MvnI	CGCG	1 cut(s)	31
MwoI	GCNNNNNNNGC	3 cut(s)	39, 137, 298
NdeII	GATC	1 cut(s)	143
NlaIII	CATG	1 cut(s)	484
NlaIV	GGNNCC	1 cut(s)	415
NmeAIII	GCCGAG	1 cut(s)	337
PceI	AGGCCT	1 cut(s)	531
PctI	GAATGC	1 cut(s)	525
PflMI	CCANNNNNTGG	1 cut(s)	533
PkrI	GCNGC	4 cut(s)	307, 310, 372, 400
PleI	GAGTC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	45
Psp124BI	GAGCTC	1 cut(s)	86
Psp6I	CCWGG	4 cut(s)	91, 110, 115, 526
PspEI	GGTNACC	1 cut(s)	362
PspGI	CCWGG	4 cut(s)	91, 110, 115, 526
PspN4I	GGNNCC	1 cut(s)	415
PspPI	GGNCC	1 cut(s)	139
RsaI	GTAC	2 cut(s)	270, 378
RsaNI	GTAC	2 cut(s)	269, 377
SacI	GAGCTC	1 cut(s)	86
SaqAI	TTAA	2 cut(s)	123, 249
SatI	GCNGC	4 cut(s)	306, 309, 371, 399
Sau3AI	GATC	1 cut(s)	143
Sau96I	GGNCC	1 cut(s)	139
SchI	GAGTC	1 cut(s)	45
ScrFI	CCNGG	4 cut(s)	93, 112, 117, 528
SduI	GDGCHC	1 cut(s)	86
SetI	ASST	6 cut(s)	44, 86, 303, 337, 351, 504
SseBI	AGGCCT	1 cut(s)	531
SsiI	CCGC	1 cut(s)	308
SspI	AATATT	1 cut(s)	216
SspMI	CTAG	1 cut(s)	410
SstI	GAGCTC	1 cut(s)	86
StuI	AGGCCT	1 cut(s)	531
StyD4I	CCNGG	4 cut(s)	91, 110, 115, 526
StyI	CCWWGG	1 cut(s)	532
TaaI	ACNGT	2 cut(s)	247, 329
TaqI	TCGA	1 cut(s)	8
TatI	WGTACW	1 cut(s)	268
TauI	GCSGC	1 cut(s)	311
Tru1I	TTAA	2 cut(s)	123, 249
Tru9I	TTAA	2 cut(s)	123, 249
TscAI	CASTG	2 cut(s)	19, 288
TseI	GCWGC	3 cut(s)	305, 370, 398
TspDTI	ATGAA	3 cut(s)	204, 255, 497
TspGWI	ACGGA	1 cut(s)	62
TspRI	CASTG	2 cut(s)	19, 288
Van91I	CCANNNNNTGG	1 cut(s)	533
XcmI	CCANNNNNNNNNTGG	1 cut(s)	108
XspI	CTAG	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.