Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0008432

Physical Location & Seq

Genomic Coordinates Reverse (-)

66953130 .. 66955690

Gene Structure 2561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG518500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGTTATTCTCTCTCCCTCTCTTTCTCTCTTCACCTCCAATCCAAACCTCTTCTTCTTCAGGTACTCTTCATCTCCATCTCTTACTTCAACAGTGGTGCACCAGCAGAGCAAATGCAGAGTACTTGAACCTGAACCATGCTCAAAACCCAATTTCCAAAATGGGTTCTGCAGCAGAAGAGAGTTATTGCTGTTTGGCCTTTCTTCTCCCCTCTTAACAGTTTTGCCATCTTCAGGGTCCCTTGCAGAAGAAGATGTGAAAATGGCTTCGTTTGCTGATGACATAAATTCTTATTCTTATCTCTACCCGGTGGAGTTGCAATCTAAGAAGGTCATCTTCAAATGGGTGGAATCCAGAAAGCCGGAACGCTATTCATCAGCTGCTCCATTATCTCCTGATGCACGCCTGCGCATTGTCTCTGAGCGTGTTGACATTATCGATAATCTCATAATTTCCATTTCGATAGGTCCCCCAAATTCGAAGATTATAAAATCACCGGACAAGAGTACCTGGACTGCAAAAGATGTTGCTGATTCTGTTTTGGCTGACAAGTCTGCATTGATTATGATTGATGAACTTTCTGTGATGCAGATGGGACCTATCTTGCAAAAGACTGTAGATTCATTTCACCTTCTCCCTCCCACAGAAAACTATGTTCCTCCATTCAAGGATCCATGGAGATTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

229

Amino Acids

25.71

Weight (kDa)

6.74

Isoelectric Point (pI)

48.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11450 AT5G11450
fragaria_vesca	FvH4_2g30170 FvH4_2g30170 FvH4_2g30170
malus_domestica	MD08G1136300.v1.1 MD15G1115400.v1.1
prunus_persica	Prupe.1G466600_v2.0.a1 Prupe.1G466600_v2.0.a1 Prupe.1G466600_v2.0.a1
pyrus_communis	pycom15g10390
rosa_chinensis	RchiOBHm_Chr6g0312741
rosa_laevigata	RLG00000010302
rosa_multiflora	Rmu_ssc0000412.1_g000013
rosa_roxburghii	Rroxscaffold_7G00156540
rosa_rugosa	Rorug06G0399000 Rorug06G0399000 Rorug06G0399100
rosa_samantha	Rh6AG516200 Rh6BG527500 Rh6CG532400 Rh6DG518500
rosa_wichuraiana	Rw6G044850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	488
Acc16I	TGCGCA	1 cut(s)	410
AclWI	GGATC	2 cut(s)	665, 678
AcsI	RAATTY	2 cut(s)	286, 475
AcuI	CTGAAG	2 cut(s)	43, 216
AfaI	GTAC	3 cut(s)	65, 123, 508
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgsI	TTSAA	4 cut(s)	90, 128, 340, 667
AjnI	CCWGG	1 cut(s)	509
AluBI	AGCT	1 cut(s)	380
AluI	AGCT	1 cut(s)	380
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	1 cut(s)	421
Alw44I	GTGCAC	1 cut(s)	98
AlwI	GGATC	2 cut(s)	665, 678
AoxI	GGCC	1 cut(s)	196
ApaLI	GTGCAC	1 cut(s)	98
ApeKI	GCWGC	2 cut(s)	171, 380
ApoI	RAATTY	2 cut(s)	286, 475
AspLEI	GCGC	1 cut(s)	411
AspS9I	GGNCC	3 cut(s)	237, 467, 596
AsuC2I	CCSGG	1 cut(s)	308
AsuHPI	GGTGA	3 cut(s)	25, 486, 620
AsuII	TTCGAA	1 cut(s)	479
AvaII	GGWCC	3 cut(s)	237, 467, 596
BaeGI	GKGCMC	1 cut(s)	102
BaeI	ACNNNNGTAYC	2 cut(s)	490, 523
BamHI	GGATCC	1 cut(s)	670
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	2 cut(s)	183, 367
BccI	CCATC	3 cut(s)	85, 235, 586
BciT130I	CCWGG	1 cut(s)	511
BcnI	CCSGG	1 cut(s)	308
BcoDI	GTCTC	1 cut(s)	421
BfmI	CTRYAG	2 cut(s)	169, 615
BisI	GCNGC	2 cut(s)	172, 381
BlsI	GCNGC	2 cut(s)	173, 382
BmcAI	AGTACT	1 cut(s)	123
Bme1390I	CCNGG	2 cut(s)	308, 511
Bme18I	GGWCC	3 cut(s)	237, 467, 596
BmgT120I	GGNCC	3 cut(s)	237, 467, 596
BmiI	GGNNCC	5 cut(s)	238, 239, 469, 597, 672
BmrFI	CCNGG	2 cut(s)	308, 511
BmsI	GCATC	2 cut(s)	388, 576
Bpu14I	TTCGAA	1 cut(s)	479
BpuMI	CCSGG	1 cut(s)	308
Bsa29I	ATCGAT	1 cut(s)	438
BsaJI	CCNNGG	1 cut(s)	674
BsaWI	WCCGGW	1 cut(s)	496
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
BseBI	CCWGG	1 cut(s)	511
BseCI	ATCGAT	1 cut(s)	438
BseDI	CCNNGG	1 cut(s)	674
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMII	CTCAG	1 cut(s)	411
BseSI	GKGCMC	1 cut(s)	102
BseXI	GCAGC	2 cut(s)	183, 367
BshFI	GGCC	1 cut(s)	198
BshVI	ATCGAT	1 cut(s)	438
BsiHKAI	GWGCWC	1 cut(s)	102
BsiSI	CCGG	3 cut(s)	308, 362, 497
BslFI	GGGAC	3 cut(s)	223, 453, 609
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmAI	GTCTC	1 cut(s)	421
BsmFI	GGGAC	3 cut(s)	223, 453, 609
BsnI	GGCC	1 cut(s)	198
Bsp119I	TTCGAA	1 cut(s)	479
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	670
Bsp19I	CCATGG	1 cut(s)	674
BspANI	GGCC	1 cut(s)	198
BspCNI	CTCAG	1 cut(s)	412
BspDI	ATCGAT	1 cut(s)	438
BspLI	GGNNCC	5 cut(s)	238, 239, 469, 597, 672
BspMAI	CTGCAG	1 cut(s)	173
BspPI	GGATC	2 cut(s)	665, 678
BspT104I	TTCGAA	1 cut(s)	479
BssECI	CCNNGG	1 cut(s)	674
BssMI	GATC	1 cut(s)	670
BssT1I	CCWWGG	1 cut(s)	674
Bst2UI	CCWGG	1 cut(s)	511
Bst4CI	ACNGT	3 cut(s)	94, 220, 616
Bst6I	CTCTTC	4 cut(s)	35, 56, 73, 172
BstBI	TTCGAA	1 cut(s)	479
BstC8I	GCNNGC	2 cut(s)	403, 407
BstDEI	CTNAG	2 cut(s)	324, 420
BstDSI	CCRYGG	1 cut(s)	674
BstHHI	GCGC	1 cut(s)	411
BstKTI	GATC	1 cut(s)	673
BstMAI	GTCTC	1 cut(s)	421
BstMBI	GATC	1 cut(s)	670
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstNI	CCWGG	1 cut(s)	511
BstSCI	CCNGG	2 cut(s)	306, 509
BstSFI	CTRYAG	2 cut(s)	169, 615
BstSLI	GKGCMC	1 cut(s)	102
BstV1I	GCAGC	2 cut(s)	183, 367
BstX2I	RGATCY	1 cut(s)	670
BstYI	RGATCY	1 cut(s)	670
Bsu15I	ATCGAT	1 cut(s)	438
BsuRI	GGCC	1 cut(s)	198
BsuTUI	ATCGAT	1 cut(s)	438
BtgI	CCRYGG	1 cut(s)	674
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	2 cut(s)	403, 407
CfoI	GCGC	1 cut(s)	411
Cfr13I	GGNCC	3 cut(s)	237, 467, 596
ClaI	ATCGAT	1 cut(s)	438
Csp6I	GTAC	3 cut(s)	64, 122, 507
CviAII	CATG	2 cut(s)	138, 675
CviJI	RGCY	5 cut(s)	198, 266, 361, 380, 545
CviKI_1	RGCY	5 cut(s)	198, 266, 361, 380, 545
CviQI	GTAC	3 cut(s)	64, 122, 507
DdeI	CTNAG	2 cut(s)	324, 420
DpnI	GATC	1 cut(s)	672
DpnII	GATC	1 cut(s)	670
Eam1104I	CTCTTC	4 cut(s)	35, 56, 73, 172
EarI	CTCTTC	4 cut(s)	35, 56, 73, 172
Eco130I	CCWWGG	1 cut(s)	674
Eco47I	GGWCC	3 cut(s)	237, 467, 596
Eco57I	CTGAAG	2 cut(s)	43, 216
EcoO109I	RGGNCCY	3 cut(s)	237, 467, 596
EcoRII	CCWGG	1 cut(s)	509
EcoT14I	CCWWGG	1 cut(s)	674
ErhI	CCWWGG	1 cut(s)	674
FaeI	CATG	2 cut(s)	141, 678
FaiI	YATR	7 cut(s)	139, 284, 449, 488, 566, 654, 676
FalI	AAGNNNNNCTT	2 cut(s)	320, 352
FaqI	GGGAC	3 cut(s)	223, 453, 609
FatI	CATG	2 cut(s)	137, 674
Fnu4HI	GCNGC	2 cut(s)	172, 381
Fsp4HI	GCNGC	2 cut(s)	172, 381
FspI	TGCGCA	1 cut(s)	410
GlaI	GCGC	1 cut(s)	410
GluI	GCNGC	2 cut(s)	172, 381
HaeIII	GGCC	1 cut(s)	198
HapII	CCGG	3 cut(s)	308, 362, 497
HhaI	GCGC	1 cut(s)	411
Hin1II	CATG	2 cut(s)	141, 678
Hin6I	GCGC	1 cut(s)	409
HinP1I	GCGC	1 cut(s)	409
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	3 cut(s)	350, 533, 620
HpaII	CCGG	3 cut(s)	308, 362, 497
HphI	GGTGA	3 cut(s)	25, 486, 620
Hpy166II	GTNNAC	2 cut(s)	100, 430
Hpy188I	TCNGA	1 cut(s)	421
Hpy188III	TCNNGA	2 cut(s)	354, 395
Hpy8I	GTNNAC	2 cut(s)	100, 430
HpyAV	CCTTC	2 cut(s)	322, 641
HpyCH4III	ACNGT	3 cut(s)	94, 220, 616
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	2 cut(s)	324, 420
Hsp92II	CATG	2 cut(s)	141, 678
HspAI	GCGC	1 cut(s)	409
KflI	GGGWCCC	1 cut(s)	237
Kzo9I	GATC	1 cut(s)	670
LmnI	GCTCC	1 cut(s)	388
Lsp1109I	GCAGC	2 cut(s)	183, 367
LweI	GCATC	2 cut(s)	388, 576
MalI	GATC	1 cut(s)	672
MboI	GATC	1 cut(s)	670
MflI	RGATCY	1 cut(s)	670
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	4 cut(s)	151, 286, 450, 475
MnlI	CCTC	6 cut(s)	28, 46, 59, 221, 648, 669
MseI	TTAA	1 cut(s)	215
MspA1I	CMGCKG	1 cut(s)	380
MspI	CCGG	3 cut(s)	308, 362, 497
MspR9I	CCNGG	2 cut(s)	308, 511
MvaI	CCWGG	1 cut(s)	511
MwoI	GCNNNNNNNGC	1 cut(s)	272
NciI	CCSGG	1 cut(s)	308
NcoI	CCATGG	1 cut(s)	674
NdeII	GATC	1 cut(s)	670
NlaIII	CATG	2 cut(s)	141, 678
NlaIV	GGNNCC	5 cut(s)	238, 239, 469, 597, 672
NsbI	TGCGCA	1 cut(s)	410
NspV	TTCGAA	1 cut(s)	479
PfeI	GAWTC	3 cut(s)	350, 533, 620
PkrI	GCNGC	2 cut(s)	173, 382
PpuMI	RGGWCCY	3 cut(s)	237, 467, 596
PsiI	TTATAA	1 cut(s)	488
Psp5II	RGGWCCY	3 cut(s)	237, 467, 596
Psp6I	CCWGG	1 cut(s)	509
PspGI	CCWGG	1 cut(s)	509
PspN4I	GGNNCC	5 cut(s)	238, 239, 469, 597, 672
PspPI	GGNCC	3 cut(s)	237, 467, 596
PspPPI	RGGWCCY	3 cut(s)	237, 467, 596
PstI	CTGCAG	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	670
PvuII	CAGCTG	1 cut(s)	380
RsaI	GTAC	3 cut(s)	65, 123, 508
RsaNI	GTAC	3 cut(s)	64, 122, 507
SaqAI	TTAA	1 cut(s)	215
SatI	GCNGC	2 cut(s)	172, 381
Sau3AI	GATC	1 cut(s)	670
Sau96I	GGNCC	3 cut(s)	237, 467, 596
ScaI	AGTACT	1 cut(s)	123
ScrFI	CCNGG	2 cut(s)	308, 511
SduI	GDGCHC	1 cut(s)	102
SfaNI	GCATC	2 cut(s)	388, 576
SfcI	CTRYAG	2 cut(s)	169, 615
SfuI	TTCGAA	1 cut(s)	479
SinI	GGWCC	3 cut(s)	237, 467, 596
Sse9I	AATT	4 cut(s)	151, 286, 450, 475
StyD4I	CCNGG	2 cut(s)	306, 509
StyI	CCWWGG	1 cut(s)	674
TaaI	ACNGT	3 cut(s)	94, 220, 616
TaqI	TCGA	3 cut(s)	438, 461, 479
TasI	AATT	4 cut(s)	151, 286, 450, 475
TatI	WGTACW	1 cut(s)	121
TfiI	GAWTC	3 cut(s)	350, 533, 620
Tru1I	TTAA	1 cut(s)	215
Tru9I	TTAA	1 cut(s)	215
TscAI	CASTG	1 cut(s)	99
TseI	GCWGC	2 cut(s)	171, 380
TspDTI	ATGAA	4 cut(s)	60, 363, 588, 612
TspRI	CASTG	1 cut(s)	99
VneI	GTGCAC	1 cut(s)	98
VpaK11BI	GGWCC	3 cut(s)	237, 467, 596
XapI	RAATTY	2 cut(s)	286, 475
XcmI	CCANNNNNNNNNTGG	1 cut(s)	681
ZrmI	AGTACT	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.