FvH4_2g30170

psbP domain-containing protein 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0008432
Physical Location & Seq
Forward (+)
23332661 .. 23335763
3103 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g30170.t1

Sequence Viewer

Length: 879 bp
ATGGTTATTCTCTCTCCCTCTCTTTCTCTCTTCACATCCAATCACTTTCTAGTTCCTCCAAACCTCTGCTTTAGAGAGCAGAACAGAACTCTAGTGCAGCAGAGCAAATGCAGAGTAGAGCAGATACTTGAACCATGCTCAAAACCCAATTTGCATAATGGGTTTTGCAGAAGGGAGTTATTGCTGTTTGGAGTTTCTTCTCCACTACTAACAGTTTTGCCATCTTCAGGGTCCCTTGCAGAAGGAGATGTGAAAATGGCTTCATTTAGTGATGAAATAAATTGTTATTCTTATCTCTACCCAGTGGAGTTGCCATCTAAGAAGGTCATCTTCAAATGGGTGGAATCAAGAAAACCAGAACGATATTCATCGGCTGCACCATTATCTCCTGATGCACGCCTGCGCATTGTCTCTGAGCGTGTTGACATTATCGATAATCTCATAATTTCCATTACGATAGGTCCTCCAAATTCGAAGATTATAAAATCACCGGACAAGAGTACATGGACTGCAAAAGAGGTTGCTGATTCTGTTTTGGCTGACAAGTCTGCATTGCGCGTTACCTCAACTCAGCGAATGGCTGAGAGTTCAGTTCTTGATGCACATACTAGTGAAATTGATGGTCAGCCATACTGGAATTTTGAGTACCTTGTCCGCAAAGCACCCACAAAAACCGCTCAAGAATCGAACAGTTACCGCCACTATGTGGCTTCAACAACCGAACGAGATGGCTACCTGTACTCTATAAACGCTTCAACTCTCAACAAGCAGTGGACCATTTTGGGACCTATCTTGAAGAAAACTGCAGATTCATTTCATCTCCTTCCTCCTACAGAAAACTATGTTCCTCCATTCAAGGATCCATGGAGATTTTGGTGA

Protein Analysis

293

Amino Acids

33.03

Weight (kDa)

8.69

Isoelectric Point (pI)

44.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 86 - 273 6.9e-14 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 482
Acc16I TGCGCA 1 cut(s) 404
AccB7I CCANNNNNTGG 1 cut(s) 706
AccBSI CCGCTC 1 cut(s) 677
AccII CGCG 1 cut(s) 558
AciI CCGC 3 cut(s) 655, 675, 697
AclWI GGATC 2 cut(s) 854, 867
AcsI RAATTY 2 cut(s) 469, 637
AcuI CTGAAG 1 cut(s) 210
AdeI CACNNNGTG 1 cut(s) 706
AfaI GTAC 3 cut(s) 502, 647, 740
AfiI CCNNNNNNNGG 2 cut(s) 227, 706
AgsI TTSAA 6 cut(s) 131, 334, 714, 756, 796, 856
AhlI ACTAGT 1 cut(s) 608
Alw26I GTCTC 1 cut(s) 415
AlwI GGATC 2 cut(s) 854, 867
ApeKI GCWGC 2 cut(s) 97, 374
ApoI RAATTY 2 cut(s) 469, 637
AspLEI GCGC 2 cut(s) 405, 558
AspS9I GGNCC 4 cut(s) 231, 461, 774, 785
AsuHPI GGTGA 1 cut(s) 480
AsuII TTCGAA 1 cut(s) 473
AvaII GGWCC 4 cut(s) 231, 461, 774, 785
BamHI GGATCC 1 cut(s) 859
BbvI GCAGC 2 cut(s) 109, 361
BccI CCATC 4 cut(s) 229, 322, 614, 722
BcoDI GTCTC 1 cut(s) 415
BcuI ACTAGT 1 cut(s) 608
BfaI CTAG 3 cut(s) 50, 92, 609
BfmI CTRYAG 2 cut(s) 804, 831
BisI GCNGC 2 cut(s) 98, 375
BlsI GCNGC 2 cut(s) 99, 376
Bme18I GGWCC 4 cut(s) 231, 461, 774, 785
BmgT120I GGNCC 4 cut(s) 231, 461, 774, 785
BmiI GGNNCC 4 cut(s) 232, 233, 786, 861
BmrI ACTGGG 1 cut(s) 296
BmsI GCATC 2 cut(s) 382, 589
BmuI ACTGGG 1 cut(s) 296
Bpu14I TTCGAA 1 cut(s) 473
BpuEI CTTGAG 1 cut(s) 663
Bsa29I ATCGAT 1 cut(s) 432
BsaBI GATNNNNATC 1 cut(s) 367
BsaJI CCNNGG 1 cut(s) 863
BsaWI WCCGGW 1 cut(s) 490
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 706
Bse1I ACTGG 2 cut(s) 302, 638
Bse3DI GCAATG 1 cut(s) 551
Bse8I GATNNNNATC 1 cut(s) 367
BseCI ATCGAT 1 cut(s) 432
BseDI CCNNGG 1 cut(s) 863
BseGI GGATG 1 cut(s) 35
BseJI GATNNNNATC 1 cut(s) 367
BseLI CCNNNNNNNGG 2 cut(s) 227, 706
BseMI GCAATG 1 cut(s) 551
BseMII CTCAG 3 cut(s) 405, 573, 584
BseNI ACTGG 2 cut(s) 302, 638
BseXI GCAGC 2 cut(s) 109, 361
BsgI GTGCAG 2 cut(s) 116, 360
Bsh1236I CGCG 1 cut(s) 558
BshVI ATCGAT 1 cut(s) 432
BsiSI CCGG 1 cut(s) 491
BslFI GGGAC 2 cut(s) 217, 798
BslI CCNNNNNNNGG 2 cut(s) 227, 706
BsmAI GTCTC 1 cut(s) 415
BsmFI GGGAC 2 cut(s) 217, 798
Bsp119I TTCGAA 1 cut(s) 473
Bsp143I GATC 1 cut(s) 859
Bsp19I CCATGG 1 cut(s) 863
BspACI CCGC 3 cut(s) 655, 675, 697
BspCNI CTCAG 3 cut(s) 406, 574, 583
BspDI ATCGAT 1 cut(s) 432
BspFNI CGCG 1 cut(s) 558
BspLI GGNNCC 4 cut(s) 232, 233, 786, 861
BspMAI CTGCAG 1 cut(s) 808
BspPI GGATC 2 cut(s) 854, 867
BspT104I TTCGAA 1 cut(s) 473
BsrBI CCGCTC 1 cut(s) 677
BsrDI GCAATG 1 cut(s) 551
BsrI ACTGG 2 cut(s) 302, 638
BssECI CCNNGG 1 cut(s) 863
BssMI GATC 1 cut(s) 859
BssT1I CCWWGG 1 cut(s) 863
Bst4CI ACNGT 2 cut(s) 214, 692
Bst6I CTCTTC 1 cut(s) 35
BstBI TTCGAA 1 cut(s) 473
BstC8I GCNNGC 2 cut(s) 397, 401
BstDEI CTNAG 4 cut(s) 318, 414, 570, 582
BstDSI CCRYGG 1 cut(s) 863
BstF5I GGATG 1 cut(s) 35
BstFNI CGCG 1 cut(s) 558
BstHHI GCGC 2 cut(s) 405, 558
BstKTI GATC 1 cut(s) 862
BstMAI GTCTC 1 cut(s) 415
BstMBI GATC 1 cut(s) 859
BstSFI CTRYAG 2 cut(s) 804, 831
BstUI CGCG 1 cut(s) 558
BstV1I GCAGC 2 cut(s) 109, 361
BstX2I RGATCY 1 cut(s) 859
BstYI RGATCY 1 cut(s) 859
Bsu15I ATCGAT 1 cut(s) 432
BsuTUI ATCGAT 1 cut(s) 432
BtgI CCRYGG 1 cut(s) 863
BtsCI GGATG 1 cut(s) 35
BtsI GCAGTG 1 cut(s) 776
BtsIMutI CAGTG 2 cut(s) 309, 776
Cac8I GCNNGC 2 cut(s) 397, 401
CfoI GCGC 2 cut(s) 405, 558
Cfr13I GGNCC 4 cut(s) 231, 461, 774, 785
ClaI ATCGAT 1 cut(s) 432
Csp6I GTAC 3 cut(s) 501, 646, 739
CviAII CATG 3 cut(s) 135, 504, 864
CviJI RGCY 7 cut(s) 260, 374, 539, 581, 628, 710, 732
CviKI_1 RGCY 7 cut(s) 260, 374, 539, 581, 628, 710, 732
CviQI GTAC 3 cut(s) 501, 646, 739
DdeI CTNAG 4 cut(s) 318, 414, 570, 582
DpnI GATC 1 cut(s) 861
DpnII GATC 1 cut(s) 859
DraIII CACNNNGTG 1 cut(s) 706
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
Eco130I CCWWGG 1 cut(s) 863
Eco47I GGWCC 4 cut(s) 231, 461, 774, 785
Eco57I CTGAAG 1 cut(s) 210
EcoO109I RGGNCCY 3 cut(s) 231, 461, 785
EcoT14I CCWWGG 1 cut(s) 863
ErhI CCWWGG 1 cut(s) 863
FaeI CATG 3 cut(s) 138, 507, 867
FalI AAGNNNNNCTT 2 cut(s) 314, 346
FaqI GGGAC 2 cut(s) 217, 798
FatI CATG 3 cut(s) 134, 503, 863
Fnu4HI GCNGC 2 cut(s) 98, 375
FokI GGATG 1 cut(s) 22
Fsp4HI GCNGC 2 cut(s) 98, 375
FspBI CTAG 3 cut(s) 50, 92, 609
FspI TGCGCA 1 cut(s) 404
GlaI GCGC 2 cut(s) 404, 557
GluI GCNGC 2 cut(s) 98, 375
HapII CCGG 1 cut(s) 491
HhaI GCGC 2 cut(s) 405, 558
Hin1II CATG 3 cut(s) 138, 507, 867
Hin6I GCGC 2 cut(s) 403, 556
HinP1I GCGC 2 cut(s) 403, 556
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HinfI GANTC 4 cut(s) 344, 527, 683, 809
HpaII CCGG 1 cut(s) 491
HphI GGTGA 1 cut(s) 480
Hpy166II GTNNAC 2 cut(s) 424, 774
Hpy188I TCNGA 1 cut(s) 415
Hpy188III TCNNGA 5 cut(s) 348, 389, 596, 680, 793
Hpy8I GTNNAC 2 cut(s) 424, 774
HpyAV CCTTC 4 cut(s) 165, 236, 316, 833
HpyCH4III ACNGT 2 cut(s) 214, 692
HpyF3I CTNAG 4 cut(s) 318, 414, 570, 582
Hsp92II CATG 3 cut(s) 138, 507, 867
HspAI GCGC 2 cut(s) 403, 556
KflI GGGWCCC 1 cut(s) 231
Kzo9I GATC 1 cut(s) 859
LpnPI CCDG 8 cut(s) 213, 315, 369, 402, 413, 504, 619, 749
Lsp1109I GCAGC 2 cut(s) 109, 361
LweI GCATC 2 cut(s) 382, 589
MaeI CTAG 3 cut(s) 50, 92, 609
MaeIII GTNAC 2 cut(s) 559, 692
MalI GATC 1 cut(s) 861
MbiI CCGCTC 1 cut(s) 677
MboI GATC 1 cut(s) 859
MboII GAAGA 6 cut(s) 22, 189, 216, 322, 487, 808
MflI RGATCY 1 cut(s) 859
MluCI AATT 6 cut(s) 148, 280, 444, 469, 615, 637
MnlI CCTC 8 cut(s) 28, 66, 74, 474, 511, 574, 837, 858
MslI CAYNNNNRTG 1 cut(s) 609
MspI CCGG 1 cut(s) 491
MvnI CGCG 1 cut(s) 558
NcoI CCATGG 1 cut(s) 863
NdeII GATC 1 cut(s) 859
NlaIII CATG 3 cut(s) 138, 507, 867
NlaIV GGNNCC 4 cut(s) 232, 233, 786, 861
NsbI TGCGCA 1 cut(s) 404
NspV TTCGAA 1 cut(s) 473
PfeI GAWTC 4 cut(s) 344, 527, 683, 809
PflMI CCANNNNNTGG 1 cut(s) 706
PkrI GCNGC 2 cut(s) 99, 376
PpuMI RGGWCCY 3 cut(s) 231, 461, 785
PsiI TTATAA 1 cut(s) 482
Psp5II RGGWCCY 3 cut(s) 231, 461, 785
PspN4I GGNNCC 4 cut(s) 232, 233, 786, 861
PspPI GGNCC 4 cut(s) 231, 461, 774, 785
PspPPI RGGWCCY 3 cut(s) 231, 461, 785
PstI CTGCAG 1 cut(s) 808
PsuI RGATCY 1 cut(s) 859
RsaI GTAC 3 cut(s) 502, 647, 740
RsaNI GTAC 3 cut(s) 501, 646, 739
RseI CAYNNNNRTG 1 cut(s) 609
SatI GCNGC 2 cut(s) 98, 375
Sau3AI GATC 1 cut(s) 859
Sau96I GGNCC 4 cut(s) 231, 461, 774, 785
SetI ASST 8 cut(s) 66, 327, 463, 522, 566, 651, 738, 790
SfaNI GCATC 2 cut(s) 382, 589
SfcI CTRYAG 2 cut(s) 804, 831
SfuI TTCGAA 1 cut(s) 473
SinI GGWCC 4 cut(s) 231, 461, 774, 785
SmiMI CAYNNNNRTG 1 cut(s) 609
SmlI CTYRAG 1 cut(s) 678
SmoI CTYRAG 1 cut(s) 678
SpeI ACTAGT 1 cut(s) 608
Sse9I AATT 6 cut(s) 148, 280, 444, 469, 615, 637
SsiI CCGC 3 cut(s) 655, 675, 697
SspMI CTAG 3 cut(s) 50, 92, 609
StyI CCWWGG 1 cut(s) 863
TaaI ACNGT 2 cut(s) 214, 692
TaqI TCGA 3 cut(s) 432, 473, 686
TasI AATT 6 cut(s) 148, 280, 444, 469, 615, 637
TatI WGTACW 2 cut(s) 500, 738
TfiI GAWTC 4 cut(s) 344, 527, 683, 809
TscAI CASTG 2 cut(s) 309, 776
TseI GCWGC 2 cut(s) 97, 374
TspDTI ATGAA 5 cut(s) 252, 288, 357, 801, 806
TspRI CASTG 2 cut(s) 309, 776
Van91I CCANNNNNTGG 1 cut(s) 706
VpaK11BI GGWCC 4 cut(s) 231, 461, 774, 785
XapI RAATTY 2 cut(s) 469, 637
XcmI CCANNNNNNNNNTGG 1 cut(s) 870
XspI CTAG 3 cut(s) 50, 92, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.