Rw6G044850

psbP domain-containing protein 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0008432
Physical Location & Seq
Reverse (-)
67961793 .. 67964469
2677 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G044850.1

Sequence Viewer

Length: 864 bp
ATGGTTATTCTCTCTCCCTCTCTTTCTCTCTTCACATCCAAATCCAATCACTTTCTTGTTCCTCCAAACCTCTTCTTCTTCAGAGAGCACAACAGAACAGTGGTGCACCAGCAGAGCAAATGCTCAAAACCCAATTTCCATTATGGGTTTTGCAGAAGAGACTTATTGCTGTTTGGCCTTTCTTCTCCACTCTTAACAGTTTTGCCATCTTCAGGGTCCCTTGCAGAAGAAGATGTGAAAATGGCTTCGTTTGCTGATGACATAAATTCTTATTCTTATCTCTACCCGCTGGAGTTGCAATCTAAGAAGGTCATCTTCAAATGGGTGGAATCGAGAAAGCCGGAACGCTATTCATCAGCTGCTCCATTATCTCCTGATGCACGCCTGCGCATTGTCTCTGAGCGTGTTGACATTATCGATAATCTCATAATTTCCATTTCGATAGGTCCCCCAAATTCAAAGATTTTAAAATCACCGGACAAGAGTACCTGGACTGCAAAAGATGTTGCTGATTCTGTTTTGGCTGACAAGTCTGCATTGCGGGTTACCTCAACTCAGCGAATGGCTGAGAGTTCAGTTCTTGATGCACATACTAGTCAAATTGATGGTCAACCATATTGGAATTTTGAGTACCTTGTCCGCAAAGCACCCACAAAAACTGCTCAAGAATCTAGCAGTTACCGGCACTATGTGGCTTCAACAACCGAACGAGATGGTTATTTGTACTGTATAAACGCTTCAACTCTCAACAAGCAGTGGAACATTATGGGACCTATCTTGCAAAAGACTGTAGATTCATTTCACCTTCTCCCTCCCACAGAAAACTATGTTCCTCCATTCAAGGATCCATGGAGATTTTGGTGA

Protein Analysis

287

Amino Acids

32.68

Weight (kDa)

8.97

Isoelectric Point (pI)

49.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 81 - 268 8.7e-15 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 389
AciI CCGC 3 cut(s) 287, 541, 640
AclWI GGATC 2 cut(s) 839, 852
AcsI RAATTY 3 cut(s) 265, 454, 622
AcuI CTGAAG 2 cut(s) 64, 195
AdeI CACNNNGTG 1 cut(s) 691
AfaI GTAC 3 cut(s) 487, 632, 725
AfiI CCNNNNNNNGG 1 cut(s) 212
AgsI TTSAA 5 cut(s) 319, 459, 699, 741, 841
AhlI ACTAGT 1 cut(s) 593
AjnI CCWGG 1 cut(s) 488
AluBI AGCT 1 cut(s) 359
AluI AGCT 1 cut(s) 359
Alw21I GWGCWC 2 cut(s) 90, 108
Alw26I GTCTC 2 cut(s) 153, 400
Alw44I GTGCAC 1 cut(s) 104
AlwI GGATC 2 cut(s) 839, 852
AoxI GGCC 1 cut(s) 175
ApaLI GTGCAC 1 cut(s) 104
ApeKI GCWGC 1 cut(s) 359
ApoI RAATTY 3 cut(s) 265, 454, 622
ArsI GACNNNNNNTTYG 2 cut(s) 592, 624
AspLEI GCGC 1 cut(s) 390
AspS9I GGNCC 3 cut(s) 216, 446, 770
AsuHPI GGTGA 2 cut(s) 465, 794
AvaII GGWCC 3 cut(s) 216, 446, 770
BaeGI GKGCMC 1 cut(s) 108
BaeI ACNNNNGTAYC 2 cut(s) 469, 502
BamHI GGATCC 1 cut(s) 844
BarI GAAGNNNNNNTAC 2 cut(s) 721, 753
Bbv12I GWGCWC 2 cut(s) 90, 108
BbvI GCAGC 1 cut(s) 346
BccI CCATC 3 cut(s) 214, 599, 707
BciT130I CCWGG 1 cut(s) 490
BcoDI GTCTC 2 cut(s) 153, 400
BcuI ACTAGT 1 cut(s) 593
BfaI CTAG 2 cut(s) 594, 672
BfmI CTRYAG 1 cut(s) 789
BisI GCNGC 1 cut(s) 360
BlsI GCNGC 1 cut(s) 361
Bme1390I CCNGG 1 cut(s) 490
Bme18I GGWCC 3 cut(s) 216, 446, 770
BmgT120I GGNCC 3 cut(s) 216, 446, 770
BmiI GGNNCC 5 cut(s) 217, 218, 448, 771, 846
BmrFI CCNGG 1 cut(s) 490
BmsI GCATC 2 cut(s) 367, 574
BpmI CTGGAG 1 cut(s) 311
BpuEI CTTGAG 1 cut(s) 648
Bsa29I ATCGAT 1 cut(s) 417
BsaJI CCNNGG 1 cut(s) 848
BsaWI WCCGGW 1 cut(s) 475
Bsc4I CCNNNNNNNGG 1 cut(s) 212
Bse118I RCCGGY 1 cut(s) 681
Bse3DI GCAATG 1 cut(s) 536
BseBI CCWGG 1 cut(s) 490
BseCI ATCGAT 1 cut(s) 417
BseDI CCNNGG 1 cut(s) 848
BseGI GGATG 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 212
BseMI GCAATG 1 cut(s) 536
BseMII CTCAG 3 cut(s) 390, 558, 569
BseSI GKGCMC 1 cut(s) 108
BseXI GCAGC 1 cut(s) 346
BshFI GGCC 1 cut(s) 177
BshVI ATCGAT 1 cut(s) 417
BsiHKAI GWGCWC 2 cut(s) 90, 108
BsiSI CCGG 3 cut(s) 341, 476, 682
BslFI GGGAC 3 cut(s) 202, 432, 783
BslI CCNNNNNNNGG 1 cut(s) 212
BsmAI GTCTC 2 cut(s) 153, 400
BsmFI GGGAC 3 cut(s) 202, 432, 783
BsnI GGCC 1 cut(s) 177
Bsp1286I GDGCHC 2 cut(s) 90, 108
Bsp143I GATC 1 cut(s) 844
Bsp19I CCATGG 1 cut(s) 848
BspACI CCGC 3 cut(s) 287, 541, 640
BspANI GGCC 1 cut(s) 177
BspCNI CTCAG 3 cut(s) 391, 559, 568
BspDI ATCGAT 1 cut(s) 417
BspLI GGNNCC 5 cut(s) 217, 218, 448, 771, 846
BspPI GGATC 2 cut(s) 839, 852
BsrDI GCAATG 1 cut(s) 536
BsrFI RCCGGY 1 cut(s) 681
BssAI RCCGGY 1 cut(s) 681
BssECI CCNNGG 1 cut(s) 848
BssMI GATC 1 cut(s) 844
BssT1I CCWWGG 1 cut(s) 848
Bst2UI CCWGG 1 cut(s) 490
Bst4CI ACNGT 4 cut(s) 100, 199, 728, 790
Bst6I CTCTTC 3 cut(s) 35, 77, 151
BstC8I GCNNGC 2 cut(s) 382, 386
BstDEI CTNAG 4 cut(s) 303, 399, 555, 567
BstDSI CCRYGG 1 cut(s) 848
BstEII GGTNACC 1 cut(s) 544
BstF5I GGATG 1 cut(s) 35
BstHHI GCGC 1 cut(s) 390
BstKTI GATC 1 cut(s) 847
BstMAI GTCTC 2 cut(s) 153, 400
BstMBI GATC 1 cut(s) 844
BstMWI GCNNNNNNNGC 2 cut(s) 251, 295
BstNI CCWGG 1 cut(s) 490
BstPI GGTNACC 1 cut(s) 544
BstSCI CCNGG 1 cut(s) 488
BstSFI CTRYAG 1 cut(s) 789
BstSLI GKGCMC 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 346
BstX2I RGATCY 1 cut(s) 844
BstYI RGATCY 1 cut(s) 844
Bsu15I ATCGAT 1 cut(s) 417
BsuRI GGCC 1 cut(s) 177
BsuTUI ATCGAT 1 cut(s) 417
BtgI CCRYGG 1 cut(s) 848
BtsCI GGATG 1 cut(s) 35
BtsI GCAGTG 1 cut(s) 761
BtsIMutI CAGTG 2 cut(s) 105, 761
Cac8I GCNNGC 2 cut(s) 382, 386
CfoI GCGC 1 cut(s) 390
Cfr10I RCCGGY 1 cut(s) 681
Cfr13I GGNCC 3 cut(s) 216, 446, 770
ClaI ATCGAT 1 cut(s) 417
Csp6I GTAC 3 cut(s) 486, 631, 724
CviAII CATG 1 cut(s) 849
CviJI RGCY 7 cut(s) 177, 245, 340, 359, 524, 566, 695
CviKI_1 RGCY 7 cut(s) 177, 245, 340, 359, 524, 566, 695
CviQI GTAC 3 cut(s) 486, 631, 724
DdeI CTNAG 4 cut(s) 303, 399, 555, 567
DpnI GATC 1 cut(s) 846
DpnII GATC 1 cut(s) 844
DraI TTTAAA 1 cut(s) 468
DraIII CACNNNGTG 1 cut(s) 691
Eam1104I CTCTTC 3 cut(s) 35, 77, 151
EarI CTCTTC 3 cut(s) 35, 77, 151
Eco130I CCWWGG 1 cut(s) 848
Eco47I GGWCC 3 cut(s) 216, 446, 770
Eco57I CTGAAG 2 cut(s) 64, 195
Eco91I GGTNACC 1 cut(s) 544
EcoO109I RGGNCCY 3 cut(s) 216, 446, 770
EcoO65I GGTNACC 1 cut(s) 544
EcoRII CCWGG 1 cut(s) 488
EcoT14I CCWWGG 1 cut(s) 848
ErhI CCWWGG 1 cut(s) 848
FaeI CATG 1 cut(s) 852
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FaqI GGGAC 3 cut(s) 202, 432, 783
FatI CATG 1 cut(s) 848
FauI CCCGC 2 cut(s) 294, 534
Fnu4HI GCNGC 1 cut(s) 360
FokI GGATG 1 cut(s) 22
Fsp4HI GCNGC 1 cut(s) 360
FspBI CTAG 2 cut(s) 594, 672
FspI TGCGCA 1 cut(s) 389
GlaI GCGC 1 cut(s) 389
GluI GCNGC 1 cut(s) 360
GsuI CTGGAG 1 cut(s) 311
HaeIII GGCC 1 cut(s) 177
HapII CCGG 3 cut(s) 341, 476, 682
HhaI GCGC 1 cut(s) 390
Hin1II CATG 1 cut(s) 852
Hin6I GCGC 1 cut(s) 388
HinP1I GCGC 1 cut(s) 388
HincII GTYRAC 2 cut(s) 409, 611
HindII GTYRAC 2 cut(s) 409, 611
HinfI GANTC 4 cut(s) 329, 512, 668, 794
HpaII CCGG 3 cut(s) 341, 476, 682
HphI GGTGA 2 cut(s) 465, 794
Hpy166II GTNNAC 3 cut(s) 106, 409, 611
Hpy188I TCNGA 2 cut(s) 83, 400
Hpy188III TCNNGA 4 cut(s) 333, 374, 581, 665
Hpy8I GTNNAC 3 cut(s) 106, 409, 611
HpyAV CCTTC 2 cut(s) 301, 815
HpyCH4III ACNGT 4 cut(s) 100, 199, 728, 790
HpyCH4V TGCA 9 cut(s) 106, 153, 224, 298, 380, 497, 536, 587, 781
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 295
HpyF3I CTNAG 4 cut(s) 303, 399, 555, 567
Hsp92II CATG 1 cut(s) 852
HspAI GCGC 1 cut(s) 388
KflI GGGWCCC 1 cut(s) 216
Kzo9I GATC 1 cut(s) 844
LmnI GCTCC 1 cut(s) 367
Lsp1109I GCAGC 1 cut(s) 346
LweI GCATC 2 cut(s) 367, 574
MaeI CTAG 2 cut(s) 594, 672
MaeIII GTNAC 2 cut(s) 544, 677
MalI GATC 1 cut(s) 846
MboI GATC 1 cut(s) 844
MflI RGATCY 1 cut(s) 844
MhlI GDGCHC 2 cut(s) 90, 108
MluCI AATT 6 cut(s) 133, 265, 429, 454, 600, 622
MnlI CCTC 6 cut(s) 28, 72, 80, 559, 822, 843
MseI TTAA 2 cut(s) 194, 467
MspA1I CMGCKG 2 cut(s) 289, 359
MspI CCGG 3 cut(s) 341, 476, 682
MspR9I CCNGG 1 cut(s) 490
MvaI CCWGG 1 cut(s) 490
MwoI GCNNNNNNNGC 2 cut(s) 251, 295
NcoI CCATGG 1 cut(s) 848
NdeII GATC 1 cut(s) 844
NlaIII CATG 1 cut(s) 852
NlaIV GGNNCC 5 cut(s) 217, 218, 448, 771, 846
NsbI TGCGCA 1 cut(s) 389
PfeI GAWTC 4 cut(s) 329, 512, 668, 794
PkrI GCNGC 1 cut(s) 361
PpuMI RGGWCCY 3 cut(s) 216, 446, 770
Psp5II RGGWCCY 3 cut(s) 216, 446, 770
Psp6I CCWGG 1 cut(s) 488
PspEI GGTNACC 1 cut(s) 544
PspGI CCWGG 1 cut(s) 488
PspN4I GGNNCC 5 cut(s) 217, 218, 448, 771, 846
PspPI GGNCC 3 cut(s) 216, 446, 770
PspPPI RGGWCCY 3 cut(s) 216, 446, 770
PsuI RGATCY 1 cut(s) 844
PvuII CAGCTG 1 cut(s) 359
RsaI GTAC 3 cut(s) 487, 632, 725
RsaNI GTAC 3 cut(s) 486, 631, 724
SaqAI TTAA 2 cut(s) 194, 467
SatI GCNGC 1 cut(s) 360
Sau3AI GATC 1 cut(s) 844
Sau96I GGNCC 3 cut(s) 216, 446, 770
ScrFI CCNGG 1 cut(s) 490
SduI GDGCHC 2 cut(s) 90, 108
SetI ASST 9 cut(s) 72, 312, 361, 448, 491, 551, 636, 775, 807
SfaNI GCATC 2 cut(s) 367, 574
SfcI CTRYAG 1 cut(s) 789
SinI GGWCC 3 cut(s) 216, 446, 770
SmlI CTYRAG 1 cut(s) 663
SmoI CTYRAG 1 cut(s) 663
SpeI ACTAGT 1 cut(s) 593
Sse9I AATT 6 cut(s) 133, 265, 429, 454, 600, 622
SsiI CCGC 3 cut(s) 287, 541, 640
SspMI CTAG 2 cut(s) 594, 672
StyD4I CCNGG 1 cut(s) 488
StyI CCWWGG 1 cut(s) 848
TaaI ACNGT 4 cut(s) 100, 199, 728, 790
TaqI TCGA 3 cut(s) 332, 417, 440
TasI AATT 6 cut(s) 133, 265, 429, 454, 600, 622
TatI WGTACW 1 cut(s) 723
TfiI GAWTC 4 cut(s) 329, 512, 668, 794
Tru1I TTAA 2 cut(s) 194, 467
Tru9I TTAA 2 cut(s) 194, 467
TscAI CASTG 2 cut(s) 105, 761
TseI GCWGC 1 cut(s) 359
TspDTI ATGAA 2 cut(s) 342, 786
TspRI CASTG 2 cut(s) 105, 761
VneI GTGCAC 1 cut(s) 104
VpaK11BI GGWCC 3 cut(s) 216, 446, 770
XapI RAATTY 3 cut(s) 265, 454, 622
XcmI CCANNNNNNNNNTGG 1 cut(s) 855
XspI CTAG 2 cut(s) 594, 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.