Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008432

Physical Location & Seq

Genomic Coordinates Reverse (-)

54405622 .. 54406632

Gene Structure 1011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0399100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGCTGGGTTTTCATCAATAGCTGCTGCTTCTGTGCTTGTCGTGTTTCTCGTCATGTTGAGCTTTTCAGAAGCCAGAGAGTTTTTGGTGGGAGGCAAAGCAGACGCATGGGCAGTCCCTTCCTCTGAATCCCAATCTCTCAACAAATGGGCCGAAAGCAAACGGTTCAACACCGGCGACATTCTCGTGTGGAAGTATGACAGTGCAAAAGACTCAGTCTTGCATGTGACCAAGGAAGACTATGTTAACTGCAACATGTCAAGCCCAATCAAGCAGTACAAGGATGGTGAGACCAAGATTGTGCTTGACAAACCAGGACCCTTCTATTTCATTAGCGGAACCAAGGACCACTGTGAAAAGGGACAGAAGCTCGTCGTTGTCGTTATGTCTCCCAGAAACAGGGCCTCTACCATCTCTCCAGCACCTTCTCCCGCGGTCGAGATCGACGGTCCTGCCGTTGCTCCGGCTCCGACTAGCACTGCTTCGCCTTTCAAGGCCGCTGGTGTCCTTGTTGTGGCGGCACTAATGGGGTTTTCGGCAGCTCTCCTCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

184

Amino Acids

19.54

Weight (kDa)

7.73

Isoelectric Point (pI)

54.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	37 - 122	1.2e-26	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11450 AT5G11450
fragaria_vesca	FvH4_2g30170 FvH4_2g30170 FvH4_2g30170
malus_domestica	MD08G1136300.v1.1 MD15G1115400.v1.1
prunus_persica	Prupe.1G466600_v2.0.a1 Prupe.1G466600_v2.0.a1 Prupe.1G466600_v2.0.a1
pyrus_communis	pycom15g10390
rosa_chinensis	RchiOBHm_Chr6g0312741
rosa_laevigata	RLG00000010302
rosa_multiflora	Rmu_ssc0000412.1_g000013
rosa_roxburghii	Rroxscaffold_7G00156540
rosa_rugosa	Rorug06G0399000 Rorug06G0399000 Rorug06G0399100
rosa_samantha	Rh6AG516200 Rh6BG527500 Rh6CG532400 Rh6DG518500
rosa_wichuraiana	Rw6G044850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	434
AciI	CCGC	5 cut(s)	336, 432, 434, 498, 518
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	2 cut(s)	399, 514
AflIII	ACRYGT	1 cut(s)	255
AgsI	TTSAA	2 cut(s)	169, 493
AjnI	CCWGG	1 cut(s)	313
AluBI	AGCT	4 cut(s)	23, 63, 370, 542
AluI	AGCT	4 cut(s)	23, 63, 370, 542
Alw26I	GTCTC	2 cut(s)	284, 393
AoxI	GGCC	3 cut(s)	150, 402, 495
ApeKI	GCWGC	3 cut(s)	23, 26, 539
AspS9I	GGNCC	5 cut(s)	150, 317, 346, 402, 449
AsuHPI	GGTGA	1 cut(s)	299
AvaII	GGWCC	3 cut(s)	317, 346, 449
BauI	CACGAG	1 cut(s)	185
BbsI	GAAGAC	1 cut(s)	243
BbvI	GCAGC	3 cut(s)	10, 13, 551
BccI	CCATC	2 cut(s)	278, 419
BceAI	ACGGC	1 cut(s)	440
BcgI	CGANNNNNNTGC	2 cut(s)	434, 468
BciT130I	CCWGG	1 cut(s)	315
BcoDI	GTCTC	2 cut(s)	284, 393
BfaI	CTAG	1 cut(s)	474
BisI	GCNGC	5 cut(s)	24, 27, 498, 519, 540
BlsI	GCNGC	5 cut(s)	25, 28, 499, 520, 541
Bme1390I	CCNGG	1 cut(s)	315
Bme18I	GGWCC	3 cut(s)	317, 346, 449
BmgT120I	GGNCC	5 cut(s)	150, 317, 346, 402, 449
BmiI	GGNNCC	3 cut(s)	319, 340, 468
BmrFI	CCNGG	1 cut(s)	315
BpiI	GAAGAC	1 cut(s)	243
BpmI	CTGGAG	1 cut(s)	402
BsaI	GGTCTC	1 cut(s)	284
BsaJI	CCNNGG	3 cut(s)	231, 342, 432
BsaXI	ACNNNNNCTCC	2 cut(s)	400, 430
Bsc4I	CCNNNNNNNGG	2 cut(s)	399, 514
Bse118I	RCCGGY	1 cut(s)	173
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	3 cut(s)	231, 342, 432
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	2 cut(s)	399, 514
BseMII	CTCAG	1 cut(s)	228
BseRI	GAGGAG	1 cut(s)	536
BseXI	GCAGC	3 cut(s)	10, 13, 551
BseYI	CCCAGC	1 cut(s)	5
Bsh1236I	CGCG	1 cut(s)	434
Bsh1285I	CGRYCG	1 cut(s)	438
BshFI	GGCC	3 cut(s)	152, 404, 497
BsiEI	CGRYCG	1 cut(s)	438
BsiSI	CCGG	2 cut(s)	174, 464
BslFI	GGGAC	2 cut(s)	101, 375
BslI	CCNNNNNNNGG	2 cut(s)	399, 514
BsmAI	GTCTC	2 cut(s)	284, 393
BsmFI	GGGAC	2 cut(s)	101, 375
BsnI	GGCC	3 cut(s)	152, 404, 497
Bso31I	GGTCTC	1 cut(s)	284
Bsp143I	GATC	1 cut(s)	441
BspACI	CCGC	5 cut(s)	336, 432, 434, 498, 518
BspANI	GGCC	3 cut(s)	152, 404, 497
BspCNI	CTCAG	1 cut(s)	227
BspFNI	CGCG	1 cut(s)	434
BspLI	GGNNCC	3 cut(s)	319, 340, 468
BspTNI	GGTCTC	1 cut(s)	284
BsrFI	RCCGGY	1 cut(s)	173
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	3 cut(s)	231, 342, 432
BssMI	GATC	1 cut(s)	441
BssSI	CACGAG	1 cut(s)	185
BssT1I	CCWWGG	2 cut(s)	231, 342
Bst2BI	CACGAG	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	4 cut(s)	165, 203, 353, 449
BstDEI	CTNAG	1 cut(s)	214
BstDSI	CCRYGG	1 cut(s)	432
BstF5I	GGATG	1 cut(s)	289
BstFNI	CGCG	1 cut(s)	434
BstKTI	GATC	1 cut(s)	444
BstMAI	GTCTC	2 cut(s)	284, 393
BstMBI	GATC	1 cut(s)	441
BstMCI	CGRYCG	1 cut(s)	438
BstNI	CCWGG	1 cut(s)	315
BstNSI	RCATGY	2 cut(s)	227, 259
BstSCI	CCNGG	1 cut(s)	313
BstUI	CGCG	1 cut(s)	434
BstV1I	GCAGC	3 cut(s)	10, 13, 551
BstV2I	GAAGAC	1 cut(s)	243
BsuRI	GGCC	3 cut(s)	152, 404, 497
BtgI	CCRYGG	1 cut(s)	432
BtsCI	GGATG	1 cut(s)	289
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	3 cut(s)	208, 349, 477
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	5 cut(s)	150, 317, 346, 402, 449
Cfr42I	CCGCGG	1 cut(s)	435
CseI	GACGC	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	4 cut(s)	55, 108, 224, 256
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	1 cut(s)	214
DpnI	GATC	1 cut(s)	443
DpnII	GATC	1 cut(s)	441
Eco130I	CCWWGG	2 cut(s)	231, 342
Eco31I	GGTCTC	1 cut(s)	284
Eco47I	GGWCC	3 cut(s)	317, 346, 449
EcoO109I	RGGNCCY	2 cut(s)	317, 402
EcoRII	CCWGG	1 cut(s)	313
EcoT14I	CCWWGG	2 cut(s)	231, 342
ErhI	CCWWGG	2 cut(s)	231, 342
FaeI	CATG	4 cut(s)	58, 111, 227, 259
FaiI	YATR	7 cut(s)	56, 109, 198, 225, 243, 257, 386
FaqI	GGGAC	2 cut(s)	101, 375
FatI	CATG	4 cut(s)	54, 107, 223, 255
FauI	CCCGC	1 cut(s)	439
Fnu4HI	GCNGC	5 cut(s)	24, 27, 498, 519, 540
FokI	GGATG	1 cut(s)	296
Fsp4HI	GCNGC	5 cut(s)	24, 27, 498, 519, 540
FspBI	CTAG	1 cut(s)	474
GluI	GCNGC	5 cut(s)	24, 27, 498, 519, 540
GsaI	CCCAGC	1 cut(s)	9
GsuI	CTGGAG	1 cut(s)	402
HaeIII	GGCC	3 cut(s)	152, 404, 497
HapII	CCGG	2 cut(s)	174, 464
HgaI	GACGC	1 cut(s)	113
Hin1II	CATG	4 cut(s)	58, 111, 227, 259
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HinfI	GANTC	2 cut(s)	128, 212
HpaI	GTTAAC	1 cut(s)	247
HpaII	CCGG	2 cut(s)	174, 464
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	4 cut(s)	70, 127, 471, 554
Hpy188III	TCNNGA	1 cut(s)	439
Hpy8I	GTNNAC	1 cut(s)	247
Hpy99I	CGWCG	2 cut(s)	377, 449
HpyAV	CCTTC	3 cut(s)	129, 331, 435
HpyCH4III	ACNGT	4 cut(s)	165, 203, 353, 449
HpyCH4V	TGCA	3 cut(s)	206, 223, 252
HpyF3I	CTNAG	1 cut(s)	214
Hsp92II	CATG	4 cut(s)	58, 111, 227, 259
KspAI	GTTAAC	1 cut(s)	247
KspI	CCGCGG	1 cut(s)	435
Kzo9I	GATC	1 cut(s)	441
LmnI	GCTCC	2 cut(s)	466, 472
Lsp1109I	GCAGC	3 cut(s)	10, 13, 551
MaeI	CTAG	1 cut(s)	474
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	1 cut(s)	443
MboI	GATC	1 cut(s)	441
MboII	GAAGA	1 cut(s)	248
MlyI	GAGTC	1 cut(s)	206
MmeI	TCCRAC	1 cut(s)	494
MnlI	CCTC	3 cut(s)	86, 133, 415
MseI	TTAA	1 cut(s)	246
MslI	CAYNNNNRTG	1 cut(s)	185
MspA1I	CMGCKG	2 cut(s)	434, 500
MspI	CCGG	2 cut(s)	174, 464
MspR9I	CCNGG	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	315
MvnI	CGCG	1 cut(s)	434
NdeII	GATC	1 cut(s)	441
NlaIII	CATG	4 cut(s)	58, 111, 227, 259
NlaIV	GGNNCC	3 cut(s)	319, 340, 468
NmuCI	GTSAC	1 cut(s)	226
NspI	RCATGY	2 cut(s)	227, 259
PciI	ACATGT	1 cut(s)	255
PcsI	WCGNNNNNNNCGW	3 cut(s)	48, 378, 453
PfeI	GAWTC	1 cut(s)	128
PflFI	GACNNNGTC	1 cut(s)	215
PkrI	GCNGC	5 cut(s)	25, 28, 499, 520, 541
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
PpuMI	RGGWCCY	1 cut(s)	317
PscI	ACATGT	1 cut(s)	255
Psp5II	RGGWCCY	1 cut(s)	317
Psp6I	CCWGG	1 cut(s)	313
PspFI	CCCAGC	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	313
PspN4I	GGNNCC	3 cut(s)	319, 340, 468
PspPI	GGNCC	5 cut(s)	150, 317, 346, 402, 449
PspPPI	RGGWCCY	1 cut(s)	317
PsyI	GACNNNGTC	1 cut(s)	215
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
RseI	CAYNNNNRTG	1 cut(s)	185
SacII	CCGCGG	1 cut(s)	435
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	5 cut(s)	24, 27, 498, 519, 540
Sau3AI	GATC	1 cut(s)	441
Sau96I	GGNCC	5 cut(s)	150, 317, 346, 402, 449
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	315
SetI	ASST	5 cut(s)	25, 65, 372, 427, 544
Sfr303I	CCGCGG	1 cut(s)	435
SgrAI	CRCCGGYG	1 cut(s)	173
SgrBI	CCGCGG	1 cut(s)	435
SinI	GGWCC	3 cut(s)	317, 346, 449
SmiMI	CAYNNNNRTG	1 cut(s)	185
SsiI	CCGC	5 cut(s)	336, 432, 434, 498, 518
SspMI	CTAG	1 cut(s)	474
StyD4I	CCNGG	1 cut(s)	313
StyI	CCWWGG	2 cut(s)	231, 342
TaaI	ACNGT	4 cut(s)	165, 203, 353, 449
TaqI	TCGA	2 cut(s)	438, 444
TatI	WGTACW	1 cut(s)	276
TauI	GCSGC	2 cut(s)	500, 521
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	3 cut(s)	208, 356, 484
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	3 cut(s)	23, 26, 539
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	1 cut(s)	319
TspRI	CASTG	3 cut(s)	208, 356, 484
Tth111I	GACNNNGTC	1 cut(s)	215
VpaK11BI	GGWCC	3 cut(s)	317, 346, 449
XceI	RCATGY	2 cut(s)	227, 259
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82
XspI	CTAG	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.