Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008432

Physical Location & Seq

Genomic Coordinates Reverse (-)

38908519 .. 38911715

Gene Structure 3197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G466600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGTTGTTCTCTCTCCTCTCTCCCTCTTCACATCCAACCAGCTTGTTCCTACAAATATGTTTTTCAGAGAGCAGGCTAGAACTGTGATACAGCAGAACAAATGGCAGCCATGTTCTAGTGCCATCTCAAAACCCACTTTGCAAAGTGGGTTTTGCAGAAGGGAGTTGTTGCTCTTTGGCCTTTCTGCTCCAGTGCTTGTAGTGTTCCCATCTTCAGGGTCCCTTGCAGAGGAAGACTTGAAAATGGCTACGTTTGTTGATGAAATAAATTCCTGTTCTTATCTATACCCAGTGGAGTTGCCATCTAAGAAGGTCATTTTCAAATGGGTGGAGTCAAGAAAGCCAGAACGCTATTCATCAGCTGCACCATTATCTCCTGATGCACGGCTTCGCATTGTTTCTGAGCGTGTTGACATTGTTGATAATCTCATCATTTCTATTTCGATAGGTCCCCCGAATTCAAAGATTATAAAATCACTAGACAAGAGTACATGGACTGCAAAAGATGTTGCTGATTCTGTTTTGGCTGACAAGTCTGCATTGCGGGTCACCTCAAGTCAGCGCATGGCGGAGAGTTCAGTTCTTGATGCACATTCCGGTGAAATTGCTGGTGAGCCATACTGGTATTATGAGTACCTTGTTCGCAAAGCACCCACGAAAACTGTAAGTGTTCTTTCTAAGAGCAGTTTTCAGCACTATGTAGCTTCAACAACCGAAAGAGATGGTTATTTGTACTCTATAAATGCTTCAACTCTCAACAAGCAGTGGAACATAGTGGGGCCTATCTTGCAAAAAACCATTGCTTCTTTTCACCTCCTCCCTCCCACAGAAAACTATGTTCCTCCATACAAGGATCCATGGAGATTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

291

Amino Acids

32.61

Weight (kDa)

8.97

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11450 AT5G11450
fragaria_vesca	FvH4_2g30170 FvH4_2g30170 FvH4_2g30170
malus_domestica	MD08G1136300.v1.1 MD15G1115400.v1.1
prunus_persica	Prupe.1G466600_v2.0.a1 Prupe.1G466600_v2.0.a1 Prupe.1G466600_v2.0.a1
pyrus_communis	pycom15g10390
rosa_chinensis	RchiOBHm_Chr6g0312741
rosa_laevigata	RLG00000010302
rosa_multiflora	Rmu_ssc0000412.1_g000013
rosa_roxburghii	Rroxscaffold_7G00156540
rosa_rugosa	Rorug06G0399000 Rorug06G0399000 Rorug06G0399100
rosa_samantha	Rh6AG516200 Rh6BG527500 Rh6CG532400 Rh6DG518500
rosa_wichuraiana	Rw6G044850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	470
AciI	CCGC	2 cut(s)	544, 569
AclWI	GGATC	2 cut(s)	848, 861
AcsI	RAATTY	2 cut(s)	268, 457
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	3 cut(s)	490, 635, 734
AfiI	CCNNNNNNNGG	2 cut(s)	215, 229
AgsI	TTSAA	5 cut(s)	241, 322, 462, 708, 750
AluBI	AGCT	3 cut(s)	43, 362, 704
AluI	AGCT	3 cut(s)	43, 362, 704
AlwI	GGATC	2 cut(s)	848, 861
AoxI	GGCC	2 cut(s)	178, 779
ApeKI	GCWGC	2 cut(s)	106, 362
ApoI	RAATTY	2 cut(s)	268, 457
AspLEI	GCGC	1 cut(s)	564
AspS9I	GGNCC	3 cut(s)	219, 449, 779
AsuHPI	GGTGA	4 cut(s)	541, 611, 623, 803
AvaII	GGWCC	2 cut(s)	219, 449
BamHI	GGATCC	1 cut(s)	853
BbsI	GAAGAC	1 cut(s)	240
BbvI	GCAGC	2 cut(s)	118, 349
BccI	CCATC	4 cut(s)	131, 217, 310, 716
BceAI	ACGGC	1 cut(s)	401
BfaI	CTAG	3 cut(s)	78, 117, 479
BisI	GCNGC	2 cut(s)	107, 363
BlsI	GCNGC	2 cut(s)	108, 364
Bme18I	GGWCC	2 cut(s)	219, 449
BmgT120I	GGNCC	3 cut(s)	219, 449, 779
BmiI	GGNNCC	5 cut(s)	220, 221, 451, 780, 855
BmrI	ACTGGG	1 cut(s)	284
BmsI	GCATC	2 cut(s)	370, 577
BmuI	ACTGGG	1 cut(s)	284
BpiI	GAAGAC	1 cut(s)	240
BpmI	CTGGAG	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	538
BsaJI	CCNNGG	1 cut(s)	857
BsaWI	WCCGGW	1 cut(s)	596
Bsc4I	CCNNNNNNNGG	2 cut(s)	215, 229
Bse1I	ACTGG	3 cut(s)	191, 290, 626
Bse3DI	GCAATG	2 cut(s)	539, 798
BseDI	CCNNGG	1 cut(s)	857
BseGI	GGATG	1 cut(s)	32
BseLI	CCNNNNNNNGG	2 cut(s)	215, 229
BseMI	GCAATG	2 cut(s)	539, 798
BseMII	CTCAG	1 cut(s)	393
BseNI	ACTGG	3 cut(s)	191, 290, 626
BseRI	GAGGAG	2 cut(s)	6, 806
BseXI	GCAGC	2 cut(s)	118, 349
BsgI	GTGCAG	1 cut(s)	348
BshFI	GGCC	2 cut(s)	180, 781
BsiSI	CCGG	1 cut(s)	597
BslFI	GGGAC	2 cut(s)	205, 435
BslI	CCNNNNNNNGG	2 cut(s)	215, 229
BsmFI	GGGAC	2 cut(s)	205, 435
BsnI	GGCC	2 cut(s)	180, 781
Bsp143I	GATC	1 cut(s)	853
Bsp19I	CCATGG	1 cut(s)	857
BspACI	CCGC	2 cut(s)	544, 569
BspANI	GGCC	2 cut(s)	180, 781
BspCNI	CTCAG	1 cut(s)	394
BspLI	GGNNCC	5 cut(s)	220, 221, 451, 780, 855
BspPI	GGATC	2 cut(s)	848, 861
BsrDI	GCAATG	2 cut(s)	539, 798
BsrI	ACTGG	3 cut(s)	191, 290, 626
BssECI	CCNNGG	1 cut(s)	857
BssMI	GATC	1 cut(s)	853
BssT1I	CCWWGG	1 cut(s)	857
Bst4CI	ACNGT	2 cut(s)	85, 664
Bst6I	CTCTTC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	3 cut(s)	306, 402, 678
BstDSI	CCRYGG	1 cut(s)	857
BstEII	GGTNACC	1 cut(s)	547
BstENI	CCTNNNNNAGG	1 cut(s)	227
BstF5I	GGATG	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	564
BstKTI	GATC	1 cut(s)	856
BstMBI	GATC	1 cut(s)	853
BstMWI	GCNNNNNNNGC	1 cut(s)	787
BstPI	GGTNACC	1 cut(s)	547
BstV1I	GCAGC	2 cut(s)	118, 349
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	1 cut(s)	853
BstYI	RGATCY	1 cut(s)	853
BsuRI	GGCC	2 cut(s)	180, 781
BtgI	CCRYGG	1 cut(s)	857
BtsCI	GGATG	1 cut(s)	32
BtsI	GCAGTG	1 cut(s)	770
BtsIMutI	CAGTG	3 cut(s)	198, 297, 770
Cac8I	GCNNGC	1 cut(s)	75
CfoI	GCGC	1 cut(s)	564
Cfr13I	GGNCC	3 cut(s)	219, 449, 779
Csp6I	GTAC	3 cut(s)	489, 634, 733
CviAII	CATG	4 cut(s)	111, 492, 565, 858
CviQI	GTAC	3 cut(s)	489, 634, 733
DdeI	CTNAG	3 cut(s)	306, 402, 678
DpnI	GATC	1 cut(s)	855
DpnII	GATC	1 cut(s)	853
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
EciI	GGCGGA	1 cut(s)	584
Eco130I	CCWWGG	1 cut(s)	857
Eco47I	GGWCC	2 cut(s)	219, 449
Eco57I	CTGAAG	1 cut(s)	198
Eco91I	GGTNACC	1 cut(s)	547
EcoNI	CCTNNNNNAGG	1 cut(s)	227
EcoO109I	RGGNCCY	3 cut(s)	219, 449, 779
EcoO65I	GGTNACC	1 cut(s)	547
EcoRI	GAATTC	1 cut(s)	457
EcoT14I	CCWWGG	1 cut(s)	857
ErhI	CCWWGG	1 cut(s)	857
FaeI	CATG	4 cut(s)	114, 495, 568, 861
FaqI	GGGAC	2 cut(s)	205, 435
FatI	CATG	4 cut(s)	110, 491, 564, 857
FauI	CCCGC	1 cut(s)	537
Fnu4HI	GCNGC	2 cut(s)	107, 363
FokI	GGATG	1 cut(s)	19
Fsp4HI	GCNGC	2 cut(s)	107, 363
FspBI	CTAG	3 cut(s)	78, 117, 479
GlaI	GCGC	1 cut(s)	563
GluI	GCNGC	2 cut(s)	107, 363
GsuI	CTGGAG	1 cut(s)	174
HaeIII	GGCC	2 cut(s)	180, 781
HapII	CCGG	1 cut(s)	597
HhaI	GCGC	1 cut(s)	564
Hin1II	CATG	4 cut(s)	114, 495, 568, 861
Hin6I	GCGC	1 cut(s)	562
HinP1I	GCGC	1 cut(s)	562
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HinfI	GANTC	2 cut(s)	332, 515
HpaII	CCGG	1 cut(s)	597
HphI	GGTGA	4 cut(s)	541, 611, 623, 803
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	2 cut(s)	68, 403
Hpy188III	TCNNGA	3 cut(s)	336, 377, 584
Hpy8I	GTNNAC	1 cut(s)	412
HpyAV	CCTTC	2 cut(s)	153, 304
HpyCH4III	ACNGT	2 cut(s)	85, 664
HpyCH4IV	ACGT	1 cut(s)	251
HpyCH4V	TGCA	9 cut(s)	142, 156, 227, 365, 383, 500, 539, 590, 790
HpyF10VI	GCNNNNNNNGC	1 cut(s)	787
HpyF3I	CTNAG	3 cut(s)	306, 402, 678
HpySE526I	ACGT	1 cut(s)	251
Hsp92II	CATG	4 cut(s)	114, 495, 568, 861
HspAI	GCGC	1 cut(s)	562
KflI	GGGWCCC	1 cut(s)	219
Kzo9I	GATC	1 cut(s)	853
LmnI	GCTCC	1 cut(s)	193
Lsp1109I	GCAGC	2 cut(s)	118, 349
LweI	GCATC	2 cut(s)	370, 577
MaeI	CTAG	3 cut(s)	78, 117, 479
MaeII	ACGT	1 cut(s)	251
MaeIII	GTNAC	1 cut(s)	547
MalI	GATC	1 cut(s)	855
MboI	GATC	1 cut(s)	853
MboII	GAAGA	3 cut(s)	19, 204, 245
MflI	RGATCY	1 cut(s)	853
MluCI	AATT	3 cut(s)	268, 457, 603
MlyI	GAGTC	1 cut(s)	341
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	8 cut(s)	27, 35, 223, 562, 824, 827, 831, 852
MslI	CAYNNNNRTG	1 cut(s)	597
MspA1I	CMGCKG	1 cut(s)	362
MspI	CCGG	1 cut(s)	597
MwoI	GCNNNNNNNGC	1 cut(s)	787
NcoI	CCATGG	1 cut(s)	857
NdeII	GATC	1 cut(s)	853
NlaIII	CATG	4 cut(s)	114, 495, 568, 861
NlaIV	GGNNCC	5 cut(s)	220, 221, 451, 780, 855
NmuCI	GTSAC	1 cut(s)	547
PfeI	GAWTC	1 cut(s)	515
PkrI	GCNGC	2 cut(s)	108, 364
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
PpuMI	RGGWCCY	2 cut(s)	219, 449
PsiI	TTATAA	1 cut(s)	470
Psp5II	RGGWCCY	2 cut(s)	219, 449
PspEI	GGTNACC	1 cut(s)	547
PspN4I	GGNNCC	5 cut(s)	220, 221, 451, 780, 855
PspPI	GGNCC	3 cut(s)	219, 449, 779
PspPPI	RGGWCCY	2 cut(s)	219, 449
PsuI	RGATCY	1 cut(s)	853
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	3 cut(s)	490, 635, 734
RsaNI	GTAC	3 cut(s)	489, 634, 733
RseI	CAYNNNNRTG	1 cut(s)	597
SatI	GCNGC	2 cut(s)	107, 363
Sau3AI	GATC	1 cut(s)	853
Sau96I	GGNCC	3 cut(s)	219, 449, 779
SchI	GAGTC	1 cut(s)	341
SetI	ASST	9 cut(s)	45, 254, 315, 364, 451, 554, 639, 706, 816
SfaNI	GCATC	2 cut(s)	370, 577
SinI	GGWCC	2 cut(s)	219, 449
SmiMI	CAYNNNNRTG	1 cut(s)	597
SmlI	CTYRAG	1 cut(s)	553
SmoI	CTYRAG	1 cut(s)	553
Sse9I	AATT	3 cut(s)	268, 457, 603
SsiI	CCGC	2 cut(s)	544, 569
SspMI	CTAG	3 cut(s)	78, 117, 479
StyI	CCWWGG	1 cut(s)	857
TaaI	ACNGT	2 cut(s)	85, 664
TaiI	ACGT	1 cut(s)	254
TaqI	TCGA	1 cut(s)	443
TasI	AATT	3 cut(s)	268, 457, 603
TatI	WGTACW	2 cut(s)	488, 732
TfiI	GAWTC	1 cut(s)	515
TscAI	CASTG	3 cut(s)	198, 297, 770
TseFI	GTSAC	1 cut(s)	547
TseI	GCWGC	2 cut(s)	106, 362
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	2 cut(s)	276, 345
TspRI	CASTG	3 cut(s)	198, 297, 770
VpaK11BI	GGWCC	2 cut(s)	219, 449
XagI	CCTNNNNNAGG	1 cut(s)	227
XapI	RAATTY	2 cut(s)	268, 457
XcmI	CCANNNNNNNNNTGG	1 cut(s)	864
XspI	CTAG	3 cut(s)	78, 117, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.