Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002679

Physical Location & Seq

Genomic Coordinates Forward (+)

3919428 .. 3922485

Gene Structure 3058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G12130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGAGCTTAGCTTCAGTTATCCACCACGGAATTCTCCCTCCGGCCAAATCGGATCGAATCTTTCTTACCATTCCGGTGTTCCCGCCGGATTTCAGAGCTCGTGGATGGACTAAGTCTCCTTTCTCTCTCCTTATAAATCCCTCTCTTGCTTCAGCTGCCAATCGTCGTCTCTCTCATCTTCCTCCTATCGCGTGTTCCAGAGGTATTGATCAGGAAGATGAAGAGAAGGAGAGCAGAGAACTTCTACCACACAAAAACGATGAGAATGCAACCACTTCACGCTCTTCTTCATCAGTAGATAGTGGAGGCCTGAAAGATTATCAACAAGAAGAAACTTACAAAACTTCCTTCAAGACTGTTGCCTTGTGTGTTGGCACTGCGGTGGCATTTGGAATTGGAATAGGTTTGAAGGAAGGTGTTGGCAAGGCTTCAGAGTTTTTCGCAGGCTACATATTGGAGCAAAGCTTGTCAGTGGACAACTTGTTTGTTTTTGTTCTTGTTTTCAAGTATTTCAAAGTGCCACTCATGTATCAGAATAAGGTACTTACCTACGGTATAGCTGGTGCAATTGTTTTCCGTTTCACGCTCATTTTACTAGGAACAGCTACTCTTCAGAAATTTGAAGCAGTCAACCTACTGCTTGCTGCTGTACTCTTATATTCGTCATTCAAGTTATTTGCAAGTGAAGAAGATGATACAGATCTATCGGACAACTTCATTGTAAAGACATGCCAGAGATTTATTCCTGTCACATCAAGTTACGATGGAAATCGATTTTTCACAAAGCATGATGGCATTTTGAAAGCCACACCATTGCTACTTACAGTAGCAGTGATCGAGCTCAGTGACATAGCATTTGCGGTTGACTCAATACCAGCTGTTTTTGGCGTCACAAGGGATCCTTTTATTGTCTTGACTTCTAATCTCTTTGCAATCCTAGGACTAAGGTCTCTCTATACACTGATTTCTGAAGGAATGGACGAGCTGGAATACTTGCAGCCATCAATAGCAGTTGTTCTTGGCTTCATAGGAGTCAAGATGATCCTTGATTTCTTTGGCTTCCACATATCAACAGAGGCATCACTTGGTGTCGTTGCACTTTCTCTCAGTACCGGAGTACTGTTGAGCCTAACAAACAAATCCAGCGACAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009791 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0055035 GO:0061024 GO:0071840 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TerC

Protein Analysis

384

Amino Acids

41.9

Weight (kDa)

5.46

Isoelectric Point (pI)

40.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TerC	PF03741	147 - 350	1.7e-50	Integral membrane protein TerC family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12130 AT5G12130
fragaria_vesca	FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940
malus_domestica	MD04G1111300.v1.1 MD12G1129500.v1.1
prunus_persica	Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1
pyrus_communis	pycom04g10350
rosa_chinensis	RchiOBHm_Chr2g0168111 RchiOBHm_Chr3g0468141
rosa_laevigata	RLG00000024445
rosa_multiflora	Rmu_sc0003659.1_g000009 Rmu_sc0005191.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412990
rosa_rugosa	Rorug03G0093600 Rorug03G0093700
rosa_samantha	Rh3AG141500 Rh3AG215500 Rh3BG163000 Rh3DG163500 Rh5BG496900 Rh6AG253800 Rh6BG009600
rosa_wichuraiana	Rw0G015560 Rw3G013370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	134
AccII	CGCG	1 cut(s)	191
AciI	CCGC	3 cut(s)	83, 380, 860
AclWI	GGATC	4 cut(s)	60, 893, 906, 1036
AcoI	YGGCCR	1 cut(s)	42
AcsI	RAATTY	2 cut(s)	30, 617
AcuI	CTGAAG	4 cut(s)	135, 414, 596, 990
AcyI	GRCGYC	1 cut(s)	888
AdeI	CACNNNGTG	1 cut(s)	1088
AfaI	GTAC	4 cut(s)	543, 651, 1111, 1119
AgsI	TTSAA	7 cut(s)	352, 409, 505, 514, 623, 670, 802
AleI	CACNNNNGTG	1 cut(s)	380
Alw21I	GWGCWC	2 cut(s)	100, 843
Alw26I	GTCTC	3 cut(s)	120, 173, 954
AlwI	GGATC	4 cut(s)	60, 893, 906, 1036
AoxI	GGCC	2 cut(s)	42, 307
ApeKI	GCWGC	3 cut(s)	155, 644, 997
ApoI	RAATTY	2 cut(s)	30, 617
ArsI	GACNNNNNNTTYG	4 cut(s)	467, 499, 839, 871
AspA2I	CCTAGG	1 cut(s)	937
AvrII	CCTAGG	1 cut(s)	937
BaeI	ACNNNNGTAYC	2 cut(s)	512, 545
BamHI	GGATCC	1 cut(s)	898
BanII	GRGCYC	2 cut(s)	100, 843
BauI	CACGAG	1 cut(s)	99
Bbv12I	GWGCWC	2 cut(s)	100, 843
BbvI	GCAGC	3 cut(s)	142, 631, 1009
BccI	CCATC	4 cut(s)	99, 758, 785, 1009
BcgI	CGANNNNNNTGC	2 cut(s)	248, 282
BclI	TGATCA	1 cut(s)	208
BcoDI	GTCTC	3 cut(s)	120, 173, 954
BfaI	CTAG	2 cut(s)	596, 938
BglII	AGATCT	1 cut(s)	700
BisI	GCNGC	3 cut(s)	156, 645, 998
BlnI	CCTAGG	1 cut(s)	937
BlpI	GCTNAGC	1 cut(s)	7
BlsI	GCNGC	3 cut(s)	157, 646, 999
BmcAI	AGTACT	1 cut(s)	1119
BmiI	GGNNCC	1 cut(s)	900
BmsI	GCATC	1 cut(s)	1088
BoxI	GACNNNNGTC	1 cut(s)	946
Bpu1102I	GCTNAGC	1 cut(s)	7
Bsa29I	ATCGAT	1 cut(s)	772
BsaBI	GATNNNNATC	2 cut(s)	699, 768
BsaHI	GRCGYC	1 cut(s)	888
BsaI	GGTCTC	1 cut(s)	954
BsaJI	CCNNGG	2 cut(s)	25, 937
BsaWI	WCCGGW	2 cut(s)	73, 1112
BsaXI	ACNNNNNCTCC	2 cut(s)	100, 130
Bse3DI	GCAATG	1 cut(s)	812
Bse8I	GATNNNNATC	2 cut(s)	699, 768
BseCI	ATCGAT	1 cut(s)	772
BseDI	CCNNGG	2 cut(s)	25, 937
BseGI	GGATG	1 cut(s)	110
BseJI	GATNNNNATC	2 cut(s)	699, 768
BseMI	GCAATG	1 cut(s)	812
BseMII	CTCAG	2 cut(s)	856, 1120
BseXI	GCAGC	3 cut(s)	142, 631, 1009
Bsh1236I	CGCG	1 cut(s)	191
BshFI	GGCC	2 cut(s)	44, 309
BshVI	ATCGAT	1 cut(s)	772
BsiHKAI	GWGCWC	2 cut(s)	100, 843
BsiSI	CCGG	4 cut(s)	41, 74, 86, 1113
BsmAI	GTCTC	3 cut(s)	120, 173, 954
BsmBI	CGTCTC	1 cut(s)	173
BsmI	GAATGC	1 cut(s)	271
BsnI	GGCC	2 cut(s)	44, 309
Bso31I	GGTCTC	1 cut(s)	954
Bsp1286I	GDGCHC	2 cut(s)	100, 843
Bsp143I	GATC	6 cut(s)	52, 208, 700, 834, 898, 1041
Bsp1720I	GCTNAGC	1 cut(s)	7
BspACI	CCGC	3 cut(s)	83, 380, 860
BspANI	GGCC	2 cut(s)	44, 309
BspCNI	CTCAG	2 cut(s)	855, 1119
BspDI	ATCGAT	1 cut(s)	772
BspFNI	CGCG	1 cut(s)	191
BspLI	GGNNCC	1 cut(s)	900
BspPI	GGATC	4 cut(s)	60, 893, 906, 1036
BspQI	GCTCTTC	1 cut(s)	289
BspTNI	GGTCTC	1 cut(s)	954
BsrDI	GCAATG	1 cut(s)	812
BssECI	CCNNGG	2 cut(s)	25, 937
BssMI	GATC	6 cut(s)	52, 208, 700, 834, 898, 1041
BssNI	GRCGYC	1 cut(s)	888
BssSI	CACGAG	1 cut(s)	99
BssT1I	CCWWGG	1 cut(s)	937
Bst2BI	CACGAG	1 cut(s)	99
Bst4CI	ACNGT	4 cut(s)	358, 554, 826, 1122
Bst6I	CTCTTC	3 cut(s)	216, 289, 615
BstACI	GRCGYC	1 cut(s)	888
BstC8I	GCNNGC	2 cut(s)	445, 642
BstDEI	CTNAG	5 cut(s)	7, 111, 842, 944, 1106
BstDSI	CCRYGG	1 cut(s)	25
BstF5I	GGATG	1 cut(s)	110
BstFNI	CGCG	1 cut(s)	191
BstKTI	GATC	6 cut(s)	55, 211, 703, 837, 901, 1044
BstMAI	GTCTC	3 cut(s)	120, 173, 954
BstMBI	GATC	6 cut(s)	52, 208, 700, 834, 898, 1041
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNSI	RCATGY	1 cut(s)	732
BstPAI	GACNNNNGTC	1 cut(s)	946
BstUI	CGCG	1 cut(s)	191
BstV1I	GCAGC	3 cut(s)	142, 631, 1009
BstX2I	RGATCY	2 cut(s)	700, 898
BstYI	RGATCY	2 cut(s)	700, 898
Bsu15I	ATCGAT	1 cut(s)	772
BsuRI	GGCC	2 cut(s)	44, 309
BsuTUI	ATCGAT	1 cut(s)	772
BtgI	CCRYGG	1 cut(s)	25
BtsCI	GGATG	1 cut(s)	110
BtsI	GCAGTG	2 cut(s)	375, 837
BtsIMutI	CAGTG	5 cut(s)	375, 477, 837, 850, 959
Cac8I	GCNNGC	2 cut(s)	445, 642
ClaI	ATCGAT	1 cut(s)	772
CseI	GACGC	1 cut(s)	877
Csp6I	GTAC	4 cut(s)	542, 650, 1110, 1118
CviAII	CATG	3 cut(s)	526, 729, 788
CviQI	GTAC	4 cut(s)	542, 650, 1110, 1118
DdeI	CTNAG	5 cut(s)	7, 111, 842, 944, 1106
DpnI	GATC	6 cut(s)	54, 210, 702, 836, 900, 1043
DpnII	GATC	6 cut(s)	52, 208, 700, 834, 898, 1041
DraIII	CACNNNGTG	1 cut(s)	1088
EaeI	YGGCCR	1 cut(s)	42
Eam1104I	CTCTTC	3 cut(s)	216, 289, 615
EarI	CTCTTC	3 cut(s)	216, 289, 615
Ecl136II	GAGCTC	2 cut(s)	98, 841
Eco130I	CCWWGG	1 cut(s)	937
Eco147I	AGGCCT	1 cut(s)	309
Eco24I	GRGCYC	2 cut(s)	100, 843
Eco31I	GGTCTC	1 cut(s)	954
Eco53kI	GAGCTC	2 cut(s)	98, 841
Eco57I	CTGAAG	4 cut(s)	135, 414, 596, 990
EcoICRI	GAGCTC	2 cut(s)	98, 841
EcoRI	GAATTC	1 cut(s)	30
EcoT14I	CCWWGG	1 cut(s)	937
EcoT38I	GRGCYC	2 cut(s)	100, 843
ErhI	CCWWGG	1 cut(s)	937
Esp3I	CGTCTC	1 cut(s)	173
FaeI	CATG	3 cut(s)	529, 732, 791
FalI	AAGNNNNNCTT	2 cut(s)	886, 918
FatI	CATG	3 cut(s)	525, 728, 787
FauI	CCCGC	1 cut(s)	90
FbaI	TGATCA	1 cut(s)	208
Fnu4HI	GCNGC	3 cut(s)	156, 645, 998
FokI	GGATG	1 cut(s)	117
FriOI	GRGCYC	2 cut(s)	100, 843
Fsp4HI	GCNGC	3 cut(s)	156, 645, 998
FspBI	CTAG	2 cut(s)	596, 938
GluI	GCNGC	3 cut(s)	156, 645, 998
HaeIII	GGCC	2 cut(s)	44, 309
HapII	CCGG	4 cut(s)	41, 74, 86, 1113
HgaI	GACGC	1 cut(s)	877
Hin1I	GRCGYC	1 cut(s)	888
Hin1II	CATG	3 cut(s)	529, 732, 791
HincII	GTYRAC	2 cut(s)	631, 865
HindII	GTYRAC	2 cut(s)	631, 865
HindIII	AAGCTT	1 cut(s)	463
HinfI	GANTC	3 cut(s)	57, 866, 1032
HpaII	CCGG	4 cut(s)	41, 74, 86, 1113
Hpy166II	GTNNAC	3 cut(s)	475, 631, 865
Hpy188I	TCNGA	7 cut(s)	52, 95, 433, 534, 615, 709, 970
Hpy188III	TCNNGA	5 cut(s)	198, 212, 352, 913, 1036
Hpy8I	GTNNAC	3 cut(s)	475, 631, 865
Hpy99I	CGWCG	1 cut(s)	168
HpyAV	CCTTC	5 cut(s)	220, 358, 403, 407, 965
HpyCH4III	ACNGT	4 cut(s)	358, 554, 826, 1122
HpyCH4V	TGCA	6 cut(s)	269, 566, 680, 932, 997, 1097
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	5 cut(s)	7, 111, 842, 944, 1106
Hsp92I	GRCGYC	1 cut(s)	888
Hsp92II	CATG	3 cut(s)	529, 732, 791
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	6 cut(s)	52, 208, 700, 834, 898, 1041
LguI	GCTCTTC	1 cut(s)	289
LmnI	GCTCC	1 cut(s)	457
Lsp1109I	GCAGC	3 cut(s)	142, 631, 1009
LweI	GCATC	1 cut(s)	1088
MaeI	CTAG	2 cut(s)	596, 938
MaeIII	GTNAC	4 cut(s)	748, 758, 845, 889
MalI	GATC	6 cut(s)	54, 210, 702, 836, 900, 1043
MboI	GATC	6 cut(s)	52, 208, 700, 834, 898, 1041
MboII	GAAGA	9 cut(s)	170, 227, 233, 276, 279, 341, 602, 698, 701
MfeI	CAATTG	1 cut(s)	567
MflI	RGATCY	2 cut(s)	700, 898
MhlI	GDGCHC	2 cut(s)	100, 843
MluCI	AATT	4 cut(s)	30, 393, 567, 617
MlyI	GAGTC	2 cut(s)	860, 1041
MnlI	CCTC	6 cut(s)	48, 151, 192, 194, 299, 1069
MslI	CAYNNNNRTG	2 cut(s)	74, 380
MspA1I	CMGCKG	2 cut(s)	155, 878
MspI	CCGG	4 cut(s)	41, 74, 86, 1113
MunI	CAATTG	1 cut(s)	567
Mva1269I	GAATGC	1 cut(s)	271
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	1 cut(s)	155
NdeII	GATC	6 cut(s)	52, 208, 700, 834, 898, 1041
NlaIII	CATG	3 cut(s)	529, 732, 791
NlaIV	GGNNCC	1 cut(s)	900
NmuCI	GTSAC	3 cut(s)	748, 845, 889
NspI	RCATGY	1 cut(s)	732
OliI	CACNNNNGTG	1 cut(s)	380
PceI	AGGCCT	1 cut(s)	309
PciSI	GCTCTTC	1 cut(s)	289
PctI	GAATGC	1 cut(s)	271
PfeI	GAWTC	1 cut(s)	57
PflFI	GACNNNGTC	1 cut(s)	112
PkrI	GCNGC	3 cut(s)	157, 646, 999
PleI	GAGTC	2 cut(s)	860, 1040
PpsI	GAGTC	2 cut(s)	860, 1040
PshAI	GACNNNNGTC	1 cut(s)	946
PsiI	TTATAA	1 cut(s)	134
Psp124BI	GAGCTC	2 cut(s)	100, 843
PspN4I	GGNNCC	1 cut(s)	900
PsuI	RGATCY	2 cut(s)	700, 898
PsyI	GACNNNGTC	1 cut(s)	112
PvuII	CAGCTG	2 cut(s)	155, 878
RsaI	GTAC	4 cut(s)	543, 651, 1111, 1119
RsaNI	GTAC	4 cut(s)	542, 650, 1110, 1118
RseI	CAYNNNNRTG	2 cut(s)	74, 380
SacI	GAGCTC	2 cut(s)	100, 843
SapI	GCTCTTC	1 cut(s)	289
SatI	GCNGC	3 cut(s)	156, 645, 998
Sau3AI	GATC	6 cut(s)	52, 208, 700, 834, 898, 1041
ScaI	AGTACT	1 cut(s)	1119
SchI	GAGTC	2 cut(s)	860, 1041
SduI	GDGCHC	2 cut(s)	100, 843
SfaNI	GCATC	1 cut(s)	1088
SmiMI	CAYNNNNRTG	2 cut(s)	74, 380
Sse9I	AATT	4 cut(s)	30, 393, 567, 617
SseBI	AGGCCT	1 cut(s)	309
SsiI	CCGC	3 cut(s)	83, 380, 860
SspMI	CTAG	2 cut(s)	596, 938
SstI	GAGCTC	2 cut(s)	100, 843
StuI	AGGCCT	1 cut(s)	309
StyI	CCWWGG	1 cut(s)	937
TaaI	ACNGT	4 cut(s)	358, 554, 826, 1122
TaqI	TCGA	3 cut(s)	55, 772, 837
TasI	AATT	4 cut(s)	30, 393, 567, 617
TatI	WGTACW	2 cut(s)	649, 1117
TfiI	GAWTC	1 cut(s)	57
TscAI	CASTG	5 cut(s)	382, 477, 837, 850, 966
TseFI	GTSAC	3 cut(s)	748, 845, 889
TseI	GCWGC	3 cut(s)	155, 644, 997
Tsp45I	GTSAC	3 cut(s)	748, 845, 889
TspDTI	ATGAA	4 cut(s)	234, 279, 706, 1015
TspGWI	ACGGA	2 cut(s)	42, 566
TspRI	CASTG	5 cut(s)	382, 477, 837, 850, 966
Tth111I	GACNNNGTC	1 cut(s)	112
XapI	RAATTY	2 cut(s)	30, 617
XceI	RCATGY	1 cut(s)	732
XmaJI	CCTAGG	1 cut(s)	937
XspI	CTAG	2 cut(s)	596, 938
ZrmI	AGTACT	1 cut(s)	1119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.