Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002679

Physical Location & Seq

Genomic Coordinates Reverse (-)

1527899 .. 1529371

Gene Structure 1473 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG009600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTTATTATCATTTGCTGCATCTACCAAGTGTTGGGACTTTTTCAGGTATTTACTGGAGCAAAGTTTGTCAGTGGACAACTTGTTTGTGTTTGTTCTGATTTTCAAGTACTTCAAAGTGCCACTTATGTATCAGGTTCGTGTTCTTTCATATGGTATTGCTGGTGCAATCATCTTTAGGTTGACATTGATACTCCTCGGAACAGTCACGCTTCAGAGGTTTGAGGCAGTAAATCTTTTCCTCGCTGCAATATTACTTTACTCATCCTTCAAGTTATTTTCCAGTGAAGAAGATGACACCGATCTGTCTGACAACTTTGTTGTGAAGACATGCCAGAAATTTATCCCTTTCACCGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009791 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0055035 GO:0061024 GO:0071840 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TerC

Protein Analysis

119

Amino Acids

13.76

Weight (kDa)

5.3

Isoelectric Point (pI)

22.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TerC	PF03741	17 - 109	1.1e-20	Integral membrane protein TerC family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12130 AT5G12130
fragaria_vesca	FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940
malus_domestica	MD04G1111300.v1.1 MD12G1129500.v1.1
prunus_persica	Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1
pyrus_communis	pycom04g10350
rosa_chinensis	RchiOBHm_Chr2g0168111 RchiOBHm_Chr3g0468141
rosa_laevigata	RLG00000024445
rosa_multiflora	Rmu_sc0003659.1_g000009 Rmu_sc0005191.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412990
rosa_rugosa	Rorug03G0093600 Rorug03G0093700
rosa_samantha	Rh3AG141500 Rh3AG215500 Rh3BG163000 Rh3DG163500 Rh5BG496900 Rh6AG253800 Rh6BG009600
rosa_wichuraiana	Rw0G015560 Rw3G013370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	33
AcsI	RAATTY	1 cut(s)	338
AcuI	CTGAAG	1 cut(s)	197
AfaI	GTAC	1 cut(s)	110
AfiI	CCNNNNNNNGG	1 cut(s)	33
AgsI	TTSAA	3 cut(s)	106, 115, 271
ApeKI	GCWGC	2 cut(s)	17, 245
ApoI	RAATTY	1 cut(s)	338
ArsI	GACNNNNNNTTYG	2 cut(s)	68, 100
AsuHPI	GGTGA	1 cut(s)	343
BaeI	ACNNNNGTAYC	2 cut(s)	113, 146
BbsI	GAAGAC	1 cut(s)	332
BbvI	GCAGC	2 cut(s)	4, 232
BfaI	CTAG	1 cut(s)	358
BisI	GCNGC	2 cut(s)	18, 246
BlsI	GCNGC	2 cut(s)	19, 247
BmcAI	AGTACT	1 cut(s)	110
BmsI	GCATC	1 cut(s)	29
BpiI	GAAGAC	1 cut(s)	332
BpmI	CTGGAG	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	1 cut(s)	33
Bse1I	ACTGG	2 cut(s)	60, 282
BseDI	CCNNGG	1 cut(s)	196
BseGI	GGATG	1 cut(s)	263
BseLI	CCNNNNNNNGG	1 cut(s)	33
BseNI	ACTGG	2 cut(s)	60, 282
BseRI	GAGGAG	1 cut(s)	185
BseXI	GCAGC	2 cut(s)	4, 232
BslFI	GGGAC	1 cut(s)	50
BslI	CCNNNNNNNGG	1 cut(s)	33
BsmFI	GGGAC	1 cut(s)	50
Bsp143I	GATC	1 cut(s)	301
BsrI	ACTGG	2 cut(s)	60, 282
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	1 cut(s)	301
Bst4CI	ACNGT	1 cut(s)	205
BstF5I	GGATG	1 cut(s)	263
BstKTI	GATC	1 cut(s)	304
BstMBI	GATC	1 cut(s)	301
BstNSI	RCATGY	1 cut(s)	333
BstV1I	GCAGC	2 cut(s)	4, 232
BstV2I	GAAGAC	1 cut(s)	332
BtsCI	GGATG	1 cut(s)	263
BtsIMutI	CAGTG	2 cut(s)	78, 289
Csp6I	GTAC	1 cut(s)	109
CviAII	CATG	1 cut(s)	330
CviQI	GTAC	1 cut(s)	109
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
Eco57I	CTGAAG	1 cut(s)	197
FaeI	CATG	1 cut(s)	333
FaiI	YATR	4 cut(s)	128, 151, 153, 331
FalI	AAGNNNNNCTT	2 cut(s)	108, 140
FaqI	GGGAC	1 cut(s)	50
FatI	CATG	1 cut(s)	329
FauNDI	CATATG	1 cut(s)	151
Fnu4HI	GCNGC	2 cut(s)	18, 246
FokI	GGATG	1 cut(s)	250
Fsp4HI	GCNGC	2 cut(s)	18, 246
FspBI	CTAG	1 cut(s)	358
GluI	GCNGC	2 cut(s)	18, 246
GsuI	CTGGAG	1 cut(s)	77
Hin1II	CATG	1 cut(s)	333
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
HphI	GGTGA	1 cut(s)	343
Hpy166II	GTNNAC	2 cut(s)	76, 183
Hpy188I	TCNGA	4 cut(s)	99, 200, 216, 310
Hpy8I	GTNNAC	2 cut(s)	76, 183
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	3 cut(s)	20, 167, 248
Hsp92II	CATG	1 cut(s)	333
Kzo9I	GATC	1 cut(s)	301
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	6 cut(s)	31, 41, 119, 147, 295, 347
Lsp1109I	GCAGC	2 cut(s)	4, 232
LweI	GCATC	1 cut(s)	29
MaeI	CTAG	1 cut(s)	358
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MboII	GAAGA	3 cut(s)	299, 302, 337
MluCI	AATT	1 cut(s)	338
MnlI	CCTC	4 cut(s)	206, 210, 217, 251
NdeI	CATATG	1 cut(s)	151
NdeII	GATC	1 cut(s)	301
NlaIII	CATG	1 cut(s)	333
NmuCI	GTSAC	1 cut(s)	205
NspI	RCATGY	1 cut(s)	333
PflMI	CCANNNNNTGG	1 cut(s)	33
PkrI	GCNGC	2 cut(s)	19, 247
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
SatI	GCNGC	2 cut(s)	18, 246
Sau3AI	GATC	1 cut(s)	301
ScaI	AGTACT	1 cut(s)	110
SetI	ASST	4 cut(s)	50, 138, 182, 221
SfaNI	GCATC	1 cut(s)	29
Sse9I	AATT	1 cut(s)	338
SspI	AATATT	1 cut(s)	252
SspMI	CTAG	1 cut(s)	358
TaaI	ACNGT	1 cut(s)	205
TasI	AATT	1 cut(s)	338
TatI	WGTACW	1 cut(s)	108
TscAI	CASTG	2 cut(s)	78, 289
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	2 cut(s)	17, 245
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	1 cut(s)	138
TspRI	CASTG	2 cut(s)	78, 289
Van91I	CCANNNNNTGG	1 cut(s)	33
XapI	RAATTY	1 cut(s)	338
XceI	RCATGY	1 cut(s)	333
XspI	CTAG	1 cut(s)	358
ZrmI	AGTACT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.