Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003659.1

Orthogroup ID

OG0002679

Physical Location & Seq

Genomic Coordinates Reverse (-)

19544 .. 22362

Gene Structure 2819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003659.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

atgggcgtggcttccgtcatccacaacggcgttcgcattcctctcaaattcaactccgaccttcctagggtttcatcgcgatccccagccccaaaatggtgcagacctcactccattcaccatcttgttcttcgcctccgcacaggtggtggtcgtggtcgacagtctgtgccaatcgtgtgttctagagcaactgagcaggacgatgatgtatttacttcagaaggcgagaggattgatcctcagtcatatgatggcattagtaatgtggacacttctcacacttccactccggataaatctaagggagctgaagcttatgttacttctgtaagaactgtagctttttgggtgtgtgcagcggtagcatttggagttggtgtgggttttaaagacggtgttggcaaggcaaccgagttttttgctgggtatttactggagcaaagtttgtcagtggataacttgtttgtgtttgttctgattttcaagtacttcaaagtgccacttattgaagaagatgacaccgatctgtctgacaacattgttgtgaagacatgccagaaatttatccctgtcaccggtttaaggtcgctttacacactcatttctgagggtatggcagacttggagtatttacagccatcaatcggtgttgttctgggctttattgggtgtaaaatgatcctggatttttttgggttccacatatcaacagaggtgtctctcggttttgtagctacaagtcttagcactggggtgctattaagtctaatgaagaaatctgactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009791 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0055035 GO:0061024 GO:0071840 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TerC

Protein Analysis

262

Amino Acids

28.55

Weight (kDa)

6.08

Isoelectric Point (pI)

39.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12130 AT5G12130
fragaria_vesca	FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940
malus_domestica	MD04G1111300.v1.1 MD12G1129500.v1.1
prunus_persica	Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1
pyrus_communis	pycom04g10350
rosa_chinensis	RchiOBHm_Chr2g0168111 RchiOBHm_Chr3g0468141
rosa_laevigata	RLG00000024445
rosa_multiflora	Rmu_sc0003659.1_g000009 Rmu_sc0005191.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412990
rosa_rugosa	Rorug03G0093600 Rorug03G0093700
rosa_samantha	Rh3AG141500 Rh3AG215500 Rh3BG163000 Rh3DG163500 Rh5BG496900 Rh6AG253800 Rh6BG009600
rosa_wichuraiana	Rw0G015560 Rw3G013370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	160
AccII	CGCG	1 cut(s)	79
AccIII	TCCGGA	1 cut(s)	292
AciI	CCGC	2 cut(s)	139, 362
AclWI	GGATC	3 cut(s)	75, 233, 676
AcsI	RAATTY	2 cut(s)	47, 563
AcuI	CTGAAG	2 cut(s)	204, 333
AfaI	GTAC	1 cut(s)	491
AfiI	CCNNNNNNNGG	5 cut(s)	67, 96, 578, 585, 647
AgeI	ACCGGT	1 cut(s)	578
AgsI	TTSAA	4 cut(s)	52, 487, 496, 512
AjnI	CCWGG	1 cut(s)	684
AjuI	GAANNNNNNNTTGG	2 cut(s)	166, 198
AleI	CACNNNNGTG	1 cut(s)	755
AluBI	AGCT	4 cut(s)	311, 317, 344, 737
AluI	AGCT	4 cut(s)	311, 317, 344, 737
Alw26I	GTCTC	1 cut(s)	726
AlwI	GGATC	3 cut(s)	75, 233, 676
Aor13HI	TCCGGA	1 cut(s)	292
ApeKI	GCWGC	1 cut(s)	359
ApoI	RAATTY	2 cut(s)	47, 563
AsiGI	ACCGGT	1 cut(s)	578
AspA2I	CCTAGG	1 cut(s)	65
AsuHPI	GGTGA	2 cut(s)	110, 568
AvrII	CCTAGG	1 cut(s)	65
BbsI	GAAGAC	1 cut(s)	557
BbvI	GCAGC	1 cut(s)	371
BccI	CCATC	3 cut(s)	129, 248, 649
BceAI	ACGGC	1 cut(s)	43
BcgI	CGANNNNNNTGC	2 cut(s)	404, 438
BciT130I	CCWGG	1 cut(s)	686
BcoDI	GTCTC	1 cut(s)	726
BfaI	CTAG	3 cut(s)	66, 186, 787
BfmI	CTRYAG	1 cut(s)	339
BisI	GCNGC	1 cut(s)	360
BlnI	CCTAGG	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	361
BmcAI	AGTACT	1 cut(s)	491
Bme1390I	CCNGG	1 cut(s)	686
BmiI	GGNNCC	1 cut(s)	701
BmrFI	CCNGG	1 cut(s)	686
BmrI	ACTGGG	1 cut(s)	762
BmuI	ACTGGG	1 cut(s)	762
BpiI	GAAGAC	1 cut(s)	557
BpmI	CTGGAG	1 cut(s)	458
BsaJI	CCNNGG	1 cut(s)	65
BsaWI	WCCGGW	2 cut(s)	292, 578
BsaXI	ACNNNNNCTCC	4 cut(s)	274, 304, 366, 396
Bsc4I	CCNNNNNNNGG	5 cut(s)	67, 96, 578, 585, 647
Bse118I	RCCGGY	1 cut(s)	578
Bse1I	ACTGG	2 cut(s)	441, 757
BseAI	TCCGGA	1 cut(s)	292
BseBI	CCWGG	1 cut(s)	686
BseDI	CCNNGG	1 cut(s)	65
BseGI	GGATG	1 cut(s)	18
BseLI	CCNNNNNNNGG	5 cut(s)	67, 96, 578, 585, 647
BseMII	CTCAG	3 cut(s)	186, 257, 600
BseNI	ACTGG	2 cut(s)	441, 757
BseXI	GCAGC	1 cut(s)	371
BseYI	CCCAGC	2 cut(s)	85, 425
BsgI	GTGCAG	2 cut(s)	121, 378
Bsh1236I	CGCG	1 cut(s)	79
BshTI	ACCGGT	1 cut(s)	578
BsiSI	CCGG	2 cut(s)	293, 579
BslI	CCNNNNNNNGG	5 cut(s)	67, 96, 578, 585, 647
BsmAI	GTCTC	1 cut(s)	726
BsmI	GAATGC	1 cut(s)	36
Bsp13I	TCCGGA	1 cut(s)	292
Bsp143I	GATC	4 cut(s)	80, 238, 526, 681
Bsp68I	TCGCGA	1 cut(s)	79
BspACI	CCGC	2 cut(s)	139, 362
BspCNI	CTCAG	3 cut(s)	187, 256, 601
BspEI	TCCGGA	1 cut(s)	292
BspFNI	CGCG	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	701
BspPI	GGATC	3 cut(s)	75, 233, 676
BsrFI	RCCGGY	1 cut(s)	578
BsrI	ACTGG	2 cut(s)	441, 757
BssAI	RCCGGY	1 cut(s)	578
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	4 cut(s)	80, 238, 526, 681
BssT1I	CCWWGG	1 cut(s)	65
Bst2UI	CCWGG	1 cut(s)	686
Bst4CI	ACNGT	3 cut(s)	165, 340, 398
BstDEI	CTNAG	5 cut(s)	195, 243, 303, 609, 746
BstF5I	GGATG	1 cut(s)	18
BstFNI	CGCG	1 cut(s)	79
BstKTI	GATC	4 cut(s)	83, 241, 529, 684
BstMAI	GTCTC	1 cut(s)	726
BstMBI	GATC	4 cut(s)	80, 238, 526, 681
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstNI	CCWGG	1 cut(s)	686
BstNSI	RCATGY	1 cut(s)	558
BstSCI	CCNGG	1 cut(s)	684
BstSFI	CTRYAG	1 cut(s)	339
BstUI	CGCG	1 cut(s)	79
BstV1I	GCAGC	1 cut(s)	371
BstV2I	GAAGAC	1 cut(s)	557
BtgZI	GCGATG	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	18
BtsIMutI	CAGTG	2 cut(s)	459, 750
BtuMI	TCGCGA	1 cut(s)	79
Cfr10I	RCCGGY	1 cut(s)	578
Csp6I	GTAC	1 cut(s)	490
CspAI	ACCGGT	1 cut(s)	578
CviAII	CATG	1 cut(s)	555
CviJI	RGCY	8 cut(s)	11, 89, 311, 317, 344, 640, 663, 737
CviKI_1	RGCY	8 cut(s)	11, 89, 311, 317, 344, 640, 663, 737
CviQI	GTAC	1 cut(s)	490
DdeI	CTNAG	5 cut(s)	195, 243, 303, 609, 746
DpnI	GATC	4 cut(s)	82, 240, 528, 683
DpnII	GATC	4 cut(s)	80, 238, 526, 681
DraI	TTTAAA	1 cut(s)	391
Eco130I	CCWWGG	1 cut(s)	65
Eco57I	CTGAAG	2 cut(s)	204, 333
EcoRII	CCWGG	1 cut(s)	684
EcoT14I	CCWWGG	1 cut(s)	65
ErhI	CCWWGG	1 cut(s)	65
FaeI	CATG	1 cut(s)	558
FaiI	YATR	6 cut(s)	250, 252, 321, 556, 617, 707
FalI	AAGNNNNNCTT	2 cut(s)	489, 521
FatI	CATG	1 cut(s)	554
FauNDI	CATATG	1 cut(s)	250
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	360
FokI	GGATG	1 cut(s)	5
Fsp4HI	GCNGC	1 cut(s)	360
FspBI	CTAG	3 cut(s)	66, 186, 787
GluI	GCNGC	1 cut(s)	360
GsaI	CCCAGC	2 cut(s)	89, 429
GsuI	CTGGAG	1 cut(s)	458
HapII	CCGG	2 cut(s)	293, 579
Hin1II	CATG	1 cut(s)	558
HincII	GTYRAC	1 cut(s)	161
HindII	GTYRAC	1 cut(s)	161
HindIII	AAGCTT	1 cut(s)	315
HpaII	CCGG	2 cut(s)	293, 579
HphI	GGTGA	2 cut(s)	110, 568
Hpy166II	GTNNAC	2 cut(s)	161, 271
Hpy188I	TCNGA	6 cut(s)	58, 223, 480, 535, 610, 784
Hpy188III	TCNNGA	3 cut(s)	78, 186, 293
Hpy8I	GTNNAC	2 cut(s)	161, 271
HpyAV	CCTTC	2 cut(s)	71, 218
HpyCH4III	ACNGT	3 cut(s)	165, 340, 398
HpyCH4V	TGCA	2 cut(s)	102, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	5 cut(s)	195, 243, 303, 609, 746
Hsp92II	CATG	1 cut(s)	558
Kpn2I	TCCGGA	1 cut(s)	292
Kzo9I	GATC	4 cut(s)	80, 238, 526, 681
LmnI	GCTCC	2 cut(s)	308, 439
Lsp1109I	GCAGC	1 cut(s)	371
MaeI	CTAG	3 cut(s)	66, 186, 787
MaeIII	GTNAC	2 cut(s)	322, 574
MalI	GATC	4 cut(s)	82, 240, 528, 683
MboI	GATC	4 cut(s)	80, 238, 526, 681
MboII	GAAGA	5 cut(s)	122, 524, 527, 562, 787
MluCI	AATT	2 cut(s)	47, 563
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	7 cut(s)	51, 117, 146, 225, 252, 604, 709
MroI	TCCGGA	1 cut(s)	292
MseI	TTAA	3 cut(s)	390, 584, 764
MslI	CAYNNNNRTG	2 cut(s)	545, 755
MspA1I	CMGCKG	1 cut(s)	362
MspI	CCGG	2 cut(s)	293, 579
MspR9I	CCNGG	1 cut(s)	686
Mva1269I	GAATGC	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	686
MvnI	CGCG	1 cut(s)	79
MwoI	GCNNNNNNNGC	1 cut(s)	365
NdeI	CATATG	1 cut(s)	250
NdeII	GATC	4 cut(s)	80, 238, 526, 681
NlaIII	CATG	1 cut(s)	558
NlaIV	GGNNCC	1 cut(s)	701
NmuCI	GTSAC	1 cut(s)	574
NruI	TCGCGA	1 cut(s)	79
NspI	RCATGY	1 cut(s)	558
OliI	CACNNNNGTG	1 cut(s)	755
PctI	GAATGC	1 cut(s)	36
PfoI	TCCNGGA	1 cut(s)	684
PinAI	ACCGGT	1 cut(s)	578
PkrI	GCNGC	1 cut(s)	361
Psp6I	CCWGG	1 cut(s)	684
PspFI	CCCAGC	2 cut(s)	85, 425
PspGI	CCWGG	1 cut(s)	684
PspN4I	GGNNCC	1 cut(s)	701
RruI	TCGCGA	1 cut(s)	79
RsaI	GTAC	1 cut(s)	491
RsaNI	GTAC	1 cut(s)	490
RseI	CAYNNNNRTG	2 cut(s)	545, 755
SalI	GTCGAC	1 cut(s)	159
SaqAI	TTAA	3 cut(s)	390, 584, 764
SatI	GCNGC	1 cut(s)	360
Sau3AI	GATC	4 cut(s)	80, 238, 526, 681
ScaI	AGTACT	1 cut(s)	491
ScrFI	CCNGG	1 cut(s)	686
SetI	ASST	9 cut(s)	63, 109, 148, 313, 319, 346, 590, 720, 739
SfcI	CTRYAG	1 cut(s)	339
SmiMI	CAYNNNNRTG	2 cut(s)	545, 755
Sse9I	AATT	2 cut(s)	47, 563
SsiI	CCGC	2 cut(s)	139, 362
SspMI	CTAG	3 cut(s)	66, 186, 787
StyD4I	CCNGG	1 cut(s)	684
StyI	CCWWGG	1 cut(s)	65
TaaI	ACNGT	3 cut(s)	165, 340, 398
TaqI	TCGA	1 cut(s)	160
TasI	AATT	2 cut(s)	47, 563
TatI	WGTACW	1 cut(s)	489
Tru1I	TTAA	3 cut(s)	390, 584, 764
Tru9I	TTAA	3 cut(s)	390, 584, 764
TscAI	CASTG	2 cut(s)	459, 757
TseFI	GTSAC	1 cut(s)	574
TseI	GCWGC	1 cut(s)	359
Tsp45I	GTSAC	1 cut(s)	574
TspDTI	ATGAA	2 cut(s)	63, 788
TspGWI	ACGGA	1 cut(s)	4
TspRI	CASTG	2 cut(s)	459, 757
XapI	RAATTY	2 cut(s)	47, 563
XbaI	TCTAGA	1 cut(s)	185
XceI	RCATGY	1 cut(s)	558
XcmI	CCANNNNNNNNNTGG	1 cut(s)	93
XmaJI	CCTAGG	1 cut(s)	65
XmiI	GTMKAC	1 cut(s)	160
XspI	CTAG	3 cut(s)	66, 186, 787
ZrmI	AGTACT	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.