Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00716

Orthogroup ID

OG0002679

Physical Location & Seq

Genomic Coordinates Forward (+)

21190 .. 22306

Gene Structure 1117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G015560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

TATTTACTGGAGCAAAGTTTGTCAGTGGACAACTTGTTTGTGTTTGTTCTGATTTTCAAGTACTTCAAAGTGCCACTTATGTATCAGGTTCGTGTTCTTTCATATGGTATTGCTGGTGCAATCATCTTTAGGTTGACATTGATACTCCTCGGAACAGTCACACTTCAGAGGTTTGAGGCAGTAAATCTTTTCCTCGCTGCAATATTACTTTACTCATCCTTCAAGATGACACCTCTGTCTGACAACTTTGTTGTGAAGACATGCCAGAAATTTATCCCTTTCACCGGTAATGATTTGGCTGTGTATATAATTCATTTATATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009791 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0055035 GO:0061024 GO:0071840 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TerC

Protein Analysis

108

Amino Acids

12.38

Weight (kDa)

9.14

Isoelectric Point (pI)

17.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TerC	PF03741	1 - 104	1.3e-19	Integral membrane protein TerC family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12130 AT5G12130
fragaria_vesca	FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940
malus_domestica	MD04G1111300.v1.1 MD12G1129500.v1.1
prunus_persica	Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1
pyrus_communis	pycom04g10350
rosa_chinensis	RchiOBHm_Chr2g0168111 RchiOBHm_Chr3g0468141
rosa_laevigata	RLG00000024445
rosa_multiflora	Rmu_sc0003659.1_g000009 Rmu_sc0005191.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412990
rosa_rugosa	Rorug03G0093600 Rorug03G0093700
rosa_samantha	Rh3AG141500 Rh3AG215500 Rh3BG163000 Rh3DG163500 Rh5BG496900 Rh6AG253800 Rh6BG009600
rosa_wichuraiana	Rw0G015560 Rw3G013370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	235
AcsI	RAATTY	1 cut(s)	269
AcuI	CTGAAG	1 cut(s)	149
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	1 cut(s)	284
AgeI	ACCGGT	1 cut(s)	284
AgsI	TTSAA	3 cut(s)	58, 67, 223
ApeKI	GCWGC	1 cut(s)	197
ApoI	RAATTY	1 cut(s)	269
ArsI	GACNNNNNNTTYG	2 cut(s)	20, 52
AsiGI	ACCGGT	1 cut(s)	284
AsuHPI	GGTGA	1 cut(s)	274
BaeI	ACNNNNGTAYC	2 cut(s)	65, 98
BbsI	GAAGAC	1 cut(s)	263
BbvI	GCAGC	1 cut(s)	184
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
BmcAI	AGTACT	1 cut(s)	62
BpiI	GAAGAC	1 cut(s)	263
BpmI	CTGGAG	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	148
BsaWI	WCCGGW	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
Bse118I	RCCGGY	1 cut(s)	284
Bse1I	ACTGG	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	1 cut(s)	215
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseNI	ACTGG	1 cut(s)	12
BseRI	GAGGAG	1 cut(s)	137
BseXI	GCAGC	1 cut(s)	184
BshTI	ACCGGT	1 cut(s)	284
BsiSI	CCGG	1 cut(s)	285
BslI	CCNNNNNNNGG	1 cut(s)	284
BsrFI	RCCGGY	1 cut(s)	284
BsrI	ACTGG	1 cut(s)	12
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	1 cut(s)	148
Bst4CI	ACNGT	1 cut(s)	157
BstF5I	GGATG	1 cut(s)	215
BstNSI	RCATGY	1 cut(s)	264
BstV1I	GCAGC	1 cut(s)	184
BstV2I	GAAGAC	1 cut(s)	263
BtsCI	GGATG	1 cut(s)	215
BtsIMutI	CAGTG	1 cut(s)	30
Cfr10I	RCCGGY	1 cut(s)	284
Csp6I	GTAC	1 cut(s)	61
CspAI	ACCGGT	1 cut(s)	284
CviAII	CATG	1 cut(s)	261
CviJI	RGCY	1 cut(s)	299
CviKI_1	RGCY	1 cut(s)	299
CviQI	GTAC	1 cut(s)	61
DrdI	GACNNNNNNGTC	1 cut(s)	235
DseDI	GACNNNNNNGTC	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	149
FaeI	CATG	1 cut(s)	264
FaiI	YATR	8 cut(s)	80, 103, 105, 262, 306, 308, 319, 321
FalI	AAGNNNNNCTT	2 cut(s)	60, 92
FatI	CATG	1 cut(s)	260
FauNDI	CATATG	1 cut(s)	103
Fnu4HI	GCNGC	1 cut(s)	198
FokI	GGATG	1 cut(s)	202
Fsp4HI	GCNGC	1 cut(s)	198
GluI	GCNGC	1 cut(s)	198
GsuI	CTGGAG	1 cut(s)	29
HapII	CCGG	1 cut(s)	285
Hin1II	CATG	1 cut(s)	264
HincII	GTYRAC	1 cut(s)	135
HindII	GTYRAC	1 cut(s)	135
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	1 cut(s)	274
Hpy166II	GTNNAC	2 cut(s)	28, 135
Hpy188I	TCNGA	4 cut(s)	51, 152, 168, 241
Hpy188III	TCNNGA	1 cut(s)	223
Hpy8I	GTNNAC	2 cut(s)	28, 135
HpyAV	CCTTC	1 cut(s)	229
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4V	TGCA	2 cut(s)	119, 200
Hsp92II	CATG	1 cut(s)	264
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	4 cut(s)	71, 99, 278, 298
Lsp1109I	GCAGC	1 cut(s)	184
MaeIII	GTNAC	1 cut(s)	157
MboII	GAAGA	1 cut(s)	268
MluCI	AATT	2 cut(s)	269, 309
MnlI	CCTC	5 cut(s)	158, 162, 169, 203, 243
MspI	CCGG	1 cut(s)	285
NdeI	CATATG	1 cut(s)	103
NlaIII	CATG	1 cut(s)	264
NmuCI	GTSAC	1 cut(s)	157
NspI	RCATGY	1 cut(s)	264
PinAI	ACCGGT	1 cut(s)	284
PkrI	GCNGC	1 cut(s)	199
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SatI	GCNGC	1 cut(s)	198
ScaI	AGTACT	1 cut(s)	62
SetI	ASST	4 cut(s)	90, 134, 173, 235
Sse9I	AATT	2 cut(s)	269, 309
SspI	AATATT	1 cut(s)	204
TaaI	ACNGT	1 cut(s)	157
TasI	AATT	2 cut(s)	269, 309
TatI	WGTACW	1 cut(s)	60
TscAI	CASTG	1 cut(s)	30
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	1 cut(s)	197
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	2 cut(s)	90, 302
TspRI	CASTG	1 cut(s)	30
XapI	RAATTY	1 cut(s)	269
XceI	RCATGY	1 cut(s)	264
ZrmI	AGTACT	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.