Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002679

Physical Location & Seq

Genomic Coordinates Reverse (-)

44357621 .. 44363939

Gene Structure 6319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG253800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAAGCCTCAAAATGGACCAAATGAGGGAGCCGTGTGTGCAGCGGTAGCATTTGGAGTTGGTGTGGGTTTTAAAGACGGCGTTTGCAAGGCAACCGAGTTTTTTGCCGGGTATTTACTGGAGCAAAGTTTGTCAGTGGACAACTTGTTTGTGTTTGTTCTGATTTTCAAGTACTTCAAAGTGCCACTTATGTATCAGGTTCGTGTTCTTTCATATGGTATTGCTGGTGCAATCATCTTTAGGTTGACATTGATACTCCTCGGAACAGTCACACTTCAGAGGTTTGAGGCAGTAAATCTTTTCCTCGCTGCAATATTACTTTACTCATCCTTCAAGTTATTTTCCAGTGAAGAAGATGACACCGATCTGTCTGACAACTTTGTTGTGAAGACATGCCAGAAATTTATCCCTTTCACCGGTAATGATTTGGCTGTGTATATAATTCATTTATATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009791 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0055035 GO:0061024 GO:0071840 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TerC

Protein Analysis

152

Amino Acids

16.85

Weight (kDa)

5.28

Isoelectric Point (pI)

15.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TerC	PF03741	35 - 138	2.5e-21	Integral membrane protein TerC family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12130 AT5G12130
fragaria_vesca	FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940
malus_domestica	MD04G1111300.v1.1 MD12G1129500.v1.1
prunus_persica	Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1
pyrus_communis	pycom04g10350
rosa_chinensis	RchiOBHm_Chr2g0168111 RchiOBHm_Chr3g0468141
rosa_laevigata	RLG00000024445
rosa_multiflora	Rmu_sc0003659.1_g000009 Rmu_sc0005191.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412990
rosa_rugosa	Rorug03G0093600 Rorug03G0093700
rosa_samantha	Rh3AG141500 Rh3AG215500 Rh3BG163000 Rh3DG163500 Rh5BG496900 Rh6AG253800 Rh6BG009600
rosa_wichuraiana	Rw0G015560 Rw3G013370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	44
AcsI	RAATTY	1 cut(s)	401
AcuI	CTGAAG	1 cut(s)	260
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	3 cut(s)	14, 26, 416
AgeI	ACCGGT	1 cut(s)	416
AgsI	TTSAA	3 cut(s)	169, 178, 334
ApeKI	GCWGC	2 cut(s)	41, 308
ApoI	RAATTY	1 cut(s)	401
ArsI	GACNNNNNNTTYG	2 cut(s)	131, 163
AsiGI	ACCGGT	1 cut(s)	416
AspS9I	GGNCC	1 cut(s)	17
AsuC2I	CCSGG	1 cut(s)	109
AsuHPI	GGTGA	1 cut(s)	406
AvaII	GGWCC	1 cut(s)	17
BaeI	ACNNNNGTAYC	2 cut(s)	176, 209
BbsI	GAAGAC	1 cut(s)	395
BbvI	GCAGC	2 cut(s)	53, 295
BceAI	ACGGC	2 cut(s)	17, 94
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BcnI	CCSGG	1 cut(s)	109
BisI	GCNGC	2 cut(s)	42, 309
BlsI	GCNGC	2 cut(s)	43, 310
BmcAI	AGTACT	1 cut(s)	173
Bme1390I	CCNGG	1 cut(s)	109
Bme18I	GGWCC	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	17
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	109
BpiI	GAAGAC	1 cut(s)	395
BpmI	CTGGAG	1 cut(s)	140
BpuMI	CCSGG	1 cut(s)	109
BsaJI	CCNNGG	1 cut(s)	259
BsaWI	WCCGGW	1 cut(s)	416
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 26, 416
Bse118I	RCCGGY	1 cut(s)	416
Bse1I	ACTGG	2 cut(s)	123, 345
BseDI	CCNNGG	1 cut(s)	259
BseGI	GGATG	1 cut(s)	326
BseLI	CCNNNNNNNGG	3 cut(s)	14, 26, 416
BseNI	ACTGG	2 cut(s)	123, 345
BseRI	GAGGAG	1 cut(s)	248
BseXI	GCAGC	2 cut(s)	53, 295
BsgI	GTGCAG	1 cut(s)	60
BshTI	ACCGGT	1 cut(s)	416
BsiSI	CCGG	2 cut(s)	108, 417
BslI	CCNNNNNNNGG	3 cut(s)	14, 26, 416
Bsp143I	GATC	1 cut(s)	364
BspACI	CCGC	1 cut(s)	44
BspLI	GGNNCC	1 cut(s)	31
BsrFI	RCCGGY	1 cut(s)	416
BsrI	ACTGG	2 cut(s)	123, 345
BssAI	RCCGGY	1 cut(s)	416
BssECI	CCNNGG	1 cut(s)	259
BssMI	GATC	1 cut(s)	364
Bst4CI	ACNGT	1 cut(s)	268
BstF5I	GGATG	1 cut(s)	326
BstKTI	GATC	1 cut(s)	367
BstMBI	GATC	1 cut(s)	364
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 47
BstNSI	RCATGY	1 cut(s)	396
BstSCI	CCNGG	1 cut(s)	107
BstV1I	GCAGC	2 cut(s)	53, 295
BstV2I	GAAGAC	1 cut(s)	395
BtsCI	GGATG	1 cut(s)	326
BtsIMutI	CAGTG	2 cut(s)	141, 352
Cfr10I	RCCGGY	1 cut(s)	416
Cfr13I	GGNCC	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	172
CspAI	ACCGGT	1 cut(s)	416
CviAII	CATG	1 cut(s)	393
CviJI	RGCY	3 cut(s)	7, 32, 431
CviKI_1	RGCY	3 cut(s)	7, 32, 431
CviQI	GTAC	1 cut(s)	172
DpnI	GATC	1 cut(s)	366
DpnII	GATC	1 cut(s)	364
DraI	TTTAAA	1 cut(s)	73
Eco47I	GGWCC	1 cut(s)	17
Eco57I	CTGAAG	1 cut(s)	260
FaeI	CATG	1 cut(s)	396
FaiI	YATR	8 cut(s)	191, 214, 216, 394, 438, 440, 451, 453
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FatI	CATG	1 cut(s)	392
FauNDI	CATATG	1 cut(s)	214
Fnu4HI	GCNGC	2 cut(s)	42, 309
FokI	GGATG	1 cut(s)	313
Fsp4HI	GCNGC	2 cut(s)	42, 309
GluI	GCNGC	2 cut(s)	42, 309
GsuI	CTGGAG	1 cut(s)	140
HapII	CCGG	2 cut(s)	108, 417
Hin1II	CATG	1 cut(s)	396
HincII	GTYRAC	1 cut(s)	246
HindII	GTYRAC	1 cut(s)	246
HpaII	CCGG	2 cut(s)	108, 417
HphI	GGTGA	1 cut(s)	406
Hpy166II	GTNNAC	2 cut(s)	139, 246
Hpy188I	TCNGA	4 cut(s)	162, 263, 279, 373
Hpy8I	GTNNAC	2 cut(s)	139, 246
HpyAV	CCTTC	1 cut(s)	340
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4V	TGCA	4 cut(s)	41, 87, 230, 311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 47
Hsp92II	CATG	1 cut(s)	396
Kzo9I	GATC	1 cut(s)	364
LmnI	GCTCC	2 cut(s)	29, 121
LpnPI	CCDG	7 cut(s)	104, 121, 182, 210, 358, 410, 430
Lsp1109I	GCAGC	2 cut(s)	53, 295
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	1 cut(s)	366
MboI	GATC	1 cut(s)	364
MboII	GAAGA	3 cut(s)	362, 365, 400
MluCI	AATT	2 cut(s)	401, 441
MnlI	CCTC	6 cut(s)	18, 19, 269, 273, 280, 314
MseI	TTAA	1 cut(s)	72
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	2 cut(s)	108, 417
MspR9I	CCNGG	1 cut(s)	109
MwoI	GCNNNNNNNGC	2 cut(s)	38, 47
NciI	CCSGG	1 cut(s)	109
NdeI	CATATG	1 cut(s)	214
NdeII	GATC	1 cut(s)	364
NlaIII	CATG	1 cut(s)	396
NlaIV	GGNNCC	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	268
NspI	RCATGY	1 cut(s)	396
PinAI	ACCGGT	1 cut(s)	416
PkrI	GCNGC	2 cut(s)	43, 310
PspN4I	GGNNCC	1 cut(s)	31
PspPI	GGNCC	1 cut(s)	17
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	2 cut(s)	42, 309
Sau3AI	GATC	1 cut(s)	364
Sau96I	GGNCC	1 cut(s)	17
ScaI	AGTACT	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	109
SetI	ASST	3 cut(s)	201, 245, 284
SinI	GGWCC	1 cut(s)	17
Sse9I	AATT	2 cut(s)	401, 441
SsiI	CCGC	1 cut(s)	44
SspI	AATATT	1 cut(s)	315
StyD4I	CCNGG	1 cut(s)	107
TaaI	ACNGT	1 cut(s)	268
TasI	AATT	2 cut(s)	401, 441
TatI	WGTACW	1 cut(s)	171
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	2 cut(s)	141, 352
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	2 cut(s)	41, 308
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	3 cut(s)	17, 201, 434
TspRI	CASTG	2 cut(s)	141, 352
VpaK11BI	GGWCC	1 cut(s)	17
XapI	RAATTY	1 cut(s)	401
XceI	RCATGY	1 cut(s)	396
ZrmI	AGTACT	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.