FvH4_6g14940

Integral membrane protein TerC family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002679
Physical Location & Seq
Forward (+)
9253858 .. 9258664
4807 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g14940.t3

Sequence Viewer

Length: 1128 bp
ATGGGCGTCGCTTCCGTCATCCACAACGGCGTCCACATTCCCCTCCAATTCAACTCCGACCTCCCTAGGGTTTCGTCACGATCTCCGGCCCCAAAATGGAGCAGACCTCACTCTCTTCACCACCTCGTTCTTCGCCTCCGCACAGGTAGTGGCCATGGTCGGCAGACCGTGCCGATTGTGTGTTCTAGAGCAACTGAGCAGGACGATGATGTATCCACCTCAGGTGAGAGGATTGAACCTCAGTCGTATGATGGCATTAGTAATGTGGACACTTCTCACAGTTCTGATCTGGATAAATCAAAGGGAGCCGAAGCTTATGTTACTTCTGTAAGAACTGTAGCTTTTTGGGTGTGCACTGCAGTTGCATTTGGAGTTGGTGTGGGTTTTAAAGACGGTGTTGGCAAGGCGACCGAGTTTTTCGCTGGGTATTTATTGGAGCAAAGCTTGTCAGTGGACAATCTCTTTGTGTTTGTTCTGATTTTCAAGTACTTCAAAGTGCCACTTATGTATCAGGGTCGTGTTCTTTCATATGGTATTGCTGGTGCAATCATCTTTCGGTTGACATTGATACTCCTCGGAACAGTTACACTTCAGAGGTTTGAGGCAGTAAATCTTTTCCTTGCTGCAATACTACTTTACTCATCCTTCAAGTTATTTTCCAGTGAAGAAGATGACACCGATCTATCTGAAAACTTTGTTGTGAAGACATGCCAGAAATTCATCCCTGTCACCGCTAGTTATGATGGCAATCGATTTTTTACAATTCAAGAGGGTGTGCGTAAGGCCACACCTTTACTTCTCACAGTAGCAGTTATTGAGCTCAGTGATATAGCATTCGCTGTCGACTCCATACCAGCAGTTTTTGGCATTACGCGGGATCCTTTCATAGTTTTCTCTTCTAATTTATTTGCCATCGTAGGTTTAAGGTCACTTTACACACTCATTTCTGAGGGTATGGCAGACTTGGAGTATTTACAGCCGGCAATTGGTGTTGTTCTGGGCTTTATTGGGTCTAAAATGATCCTGGATTTTTTTGGGTTCCACATATCAACGGAGGTGTCACTTGGTTTTGTAGCTACAAGTCTTGGTGCTGGGGTGCTATTAAGTCTAATGAAGAAATCTGACTAG

Protein Analysis

376

Amino Acids

40.86

Weight (kDa)

5.92

Isoelectric Point (pI)

36.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TerC PF03741 140 - 239 9.7e-21 Integral membrane protein TerC family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 843
AccII CGCG 1 cut(s) 874
AciI CCGC 3 cut(s) 139, 732, 874
AclWI GGATC 3 cut(s) 872, 885, 1015
AcoI YGGCCR 1 cut(s) 151
AcsI RAATTY 1 cut(s) 716
AcuI CTGAAG 1 cut(s) 575
AcyI GRCGYC 2 cut(s) 6, 30
AfaI GTAC 1 cut(s) 488
AfiI CCNNNNNNNGG 3 cut(s) 67, 96, 986
AgsI TTSAA 6 cut(s) 52, 236, 484, 493, 649, 767
AjnI CCWGG 1 cut(s) 1023
AluBI AGCT 5 cut(s) 314, 341, 444, 820, 1076
AluI AGCT 5 cut(s) 314, 341, 444, 820, 1076
Alw21I GWGCWC 2 cut(s) 356, 822
Alw44I GTGCAC 1 cut(s) 352
AlwI GGATC 3 cut(s) 872, 885, 1015
AoxI GGCC 3 cut(s) 87, 151, 783
ApaLI GTGCAC 1 cut(s) 352
ApeKI GCWGC 1 cut(s) 623
ApoI RAATTY 1 cut(s) 716
ArsI GACNNNNNNTTYG 2 cut(s) 446, 478
AspA2I CCTAGG 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 88
AsuHPI GGTGA 3 cut(s) 110, 236, 721
AvrII CCTAGG 1 cut(s) 65
AxyI CCTNAGG 1 cut(s) 220
BaeGI GKGCMC 1 cut(s) 356
BaeI ACNNNNGTAYC 2 cut(s) 491, 524
BalI TGGCCA 1 cut(s) 153
BamHI GGATCC 1 cut(s) 877
BanII GRGCYC 1 cut(s) 822
BbsI GAAGAC 1 cut(s) 710
Bbv12I GWGCWC 2 cut(s) 356, 822
BbvI GCAGC 1 cut(s) 610
BccI CCATC 3 cut(s) 245, 737, 920
BceAI ACGGC 1 cut(s) 43
BciT130I CCWGG 1 cut(s) 1025
BciVI GTATCC 1 cut(s) 223
BfaI CTAG 4 cut(s) 66, 186, 735, 1126
BfmI CTRYAG 2 cut(s) 336, 357
BfuI GTATCC 1 cut(s) 223
BisI GCNGC 1 cut(s) 624
BlnI CCTAGG 1 cut(s) 65
BlsI GCNGC 1 cut(s) 625
BmcAI AGTACT 1 cut(s) 488
Bme1390I CCNGG 1 cut(s) 1025
BmgT120I GGNCC 1 cut(s) 88
BmiI GGNNCC 4 cut(s) 90, 307, 879, 1040
BmrFI CCNGG 1 cut(s) 1025
BpiI GAAGAC 1 cut(s) 710
BplI GAGNNNNNCTC 2 cut(s) 91, 123
Bsa29I ATCGAT 1 cut(s) 751
BsaBI GATNNNNATC 1 cut(s) 747
BsaHI GRCGYC 2 cut(s) 6, 30
BsaJI CCNNGG 3 cut(s) 65, 154, 574
BsaXI ACNNNNNCTCC 2 cut(s) 363, 393
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 96, 986
Bse118I RCCGGY 1 cut(s) 979
Bse1I ACTGG 1 cut(s) 660
Bse21I CCTNAGG 1 cut(s) 220
Bse8I GATNNNNATC 1 cut(s) 747
BseBI CCWGG 1 cut(s) 1025
BseCI ATCGAT 1 cut(s) 751
BseDI CCNNGG 3 cut(s) 65, 154, 574
BseGI GGATG 3 cut(s) 18, 641, 720
BseJI GATNNNNATC 1 cut(s) 747
BseLI CCNNNNNNNGG 3 cut(s) 67, 96, 986
BseMII CTCAG 5 cut(s) 186, 234, 254, 835, 939
BseNI ACTGG 1 cut(s) 660
BseRI GAGGAG 1 cut(s) 563
BseSI GKGCMC 1 cut(s) 356
BseXI GCAGC 1 cut(s) 610
BseYI CCCAGC 2 cut(s) 422, 1091
Bsh1236I CGCG 1 cut(s) 874
Bsh1285I CGRYCG 1 cut(s) 411
BshFI GGCC 3 cut(s) 89, 153, 785
BshVI ATCGAT 1 cut(s) 751
BsiEI CGRYCG 1 cut(s) 411
BsiHKAI GWGCWC 2 cut(s) 356, 822
BsiSI CCGG 2 cut(s) 86, 980
BslI CCNNNNNNNGG 3 cut(s) 67, 96, 986
BsmI GAATGC 1 cut(s) 833
BsnI GGCC 3 cut(s) 89, 153, 785
Bsp1286I GDGCHC 2 cut(s) 356, 822
Bsp143I GATC 5 cut(s) 80, 286, 679, 877, 1020
Bsp19I CCATGG 1 cut(s) 154
BspACI CCGC 3 cut(s) 139, 732, 874
BspANI GGCC 3 cut(s) 89, 153, 785
BspCNI CTCAG 5 cut(s) 187, 233, 253, 834, 940
BspDI ATCGAT 1 cut(s) 751
BspFNI CGCG 1 cut(s) 874
BspLI GGNNCC 4 cut(s) 90, 307, 879, 1040
BspMAI CTGCAG 1 cut(s) 361
BspPI GGATC 3 cut(s) 872, 885, 1015
BsrFI RCCGGY 1 cut(s) 979
BsrI ACTGG 1 cut(s) 660
BssAI RCCGGY 1 cut(s) 979
BssECI CCNNGG 3 cut(s) 65, 154, 574
BssMI GATC 5 cut(s) 80, 286, 679, 877, 1020
BssNI GRCGYC 2 cut(s) 6, 30
BssT1I CCWWGG 2 cut(s) 65, 154
Bst2UI CCWGG 1 cut(s) 1025
Bst4CI ACNGT 6 cut(s) 169, 281, 337, 395, 583, 805
Bst6I CTCTTC 2 cut(s) 120, 901
BstACI GRCGYC 2 cut(s) 6, 30
BstAPI GCANNNNNTGC 1 cut(s) 169
BstC8I GCNNGC 1 cut(s) 981
BstDEI CTNAG 5 cut(s) 195, 220, 240, 821, 948
BstDSI CCRYGG 1 cut(s) 154
BstF5I GGATG 3 cut(s) 18, 641, 720
BstFNI CGCG 1 cut(s) 874
BstKTI GATC 5 cut(s) 83, 289, 682, 880, 1023
BstMBI GATC 5 cut(s) 80, 286, 679, 877, 1020
BstMCI CGRYCG 1 cut(s) 411
BstMWI GCNNNNNNNGC 1 cut(s) 169
BstNI CCWGG 1 cut(s) 1025
BstNSI RCATGY 1 cut(s) 711
BstSCI CCNGG 1 cut(s) 1023
BstSFI CTRYAG 2 cut(s) 336, 357
BstSLI GKGCMC 1 cut(s) 356
BstUI CGCG 1 cut(s) 874
BstV1I GCAGC 1 cut(s) 610
BstV2I GAAGAC 1 cut(s) 710
BstX2I RGATCY 1 cut(s) 877
BstYI RGATCY 1 cut(s) 877
Bsu15I ATCGAT 1 cut(s) 751
Bsu36I CCTNAGG 1 cut(s) 220
BsuI GTATCC 1 cut(s) 223
BsuRI GGCC 3 cut(s) 89, 153, 785
BsuTUI ATCGAT 1 cut(s) 751
BtgI CCRYGG 1 cut(s) 154
BtsCI GGATG 3 cut(s) 18, 641, 720
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 4 cut(s) 354, 456, 667, 829
Cac8I GCNNGC 1 cut(s) 981
Cfr10I RCCGGY 1 cut(s) 979
Cfr13I GGNCC 1 cut(s) 88
ClaI ATCGAT 1 cut(s) 751
CseI GACGC 1 cut(s) 19
Csp6I GTAC 1 cut(s) 487
CviAII CATG 2 cut(s) 155, 708
CviQI GTAC 1 cut(s) 487
DdeI CTNAG 5 cut(s) 195, 220, 240, 821, 948
DpnI GATC 5 cut(s) 82, 288, 681, 879, 1022
DpnII GATC 5 cut(s) 80, 286, 679, 877, 1020
DraI TTTAAA 1 cut(s) 388
EaeI YGGCCR 1 cut(s) 151
Eam1104I CTCTTC 2 cut(s) 120, 901
EarI CTCTTC 2 cut(s) 120, 901
Ecl136II GAGCTC 1 cut(s) 820
Eco130I CCWWGG 2 cut(s) 65, 154
Eco24I GRGCYC 1 cut(s) 822
Eco53kI GAGCTC 1 cut(s) 820
Eco57I CTGAAG 1 cut(s) 575
Eco81I CCTNAGG 1 cut(s) 220
EcoICRI GAGCTC 1 cut(s) 820
EcoRII CCWGG 1 cut(s) 1023
EcoT14I CCWWGG 2 cut(s) 65, 154
EcoT38I GRGCYC 1 cut(s) 822
ErhI CCWWGG 2 cut(s) 65, 154
FaeI CATG 2 cut(s) 158, 711
FalI AAGNNNNNCTT 2 cut(s) 486, 518
FatI CATG 2 cut(s) 154, 707
FauI CCCGC 1 cut(s) 867
FauNDI CATATG 1 cut(s) 529
FblI GTMKAC 1 cut(s) 843
Fnu4HI GCNGC 1 cut(s) 624
FokI GGATG 3 cut(s) 5, 628, 707
FriOI GRGCYC 1 cut(s) 822
Fsp4HI GCNGC 1 cut(s) 624
FspBI CTAG 4 cut(s) 66, 186, 735, 1126
GluI GCNGC 1 cut(s) 624
GsaI CCCAGC 2 cut(s) 426, 1095
HaeIII GGCC 3 cut(s) 89, 153, 785
HapII CCGG 2 cut(s) 86, 980
HgaI GACGC 1 cut(s) 19
Hin1I GRCGYC 2 cut(s) 6, 30
Hin1II CATG 2 cut(s) 158, 711
HincII GTYRAC 2 cut(s) 561, 844
HindII GTYRAC 2 cut(s) 561, 844
HindIII AAGCTT 2 cut(s) 312, 442
HinfI GANTC 1 cut(s) 845
HpaII CCGG 2 cut(s) 86, 980
HphI GGTGA 3 cut(s) 110, 236, 721
Hpy166II GTNNAC 6 cut(s) 34, 268, 354, 454, 561, 844
Hpy188I TCNGA 8 cut(s) 58, 286, 477, 578, 594, 688, 949, 1123
Hpy188III TCNNGA 4 cut(s) 78, 186, 290, 767
Hpy8I GTNNAC 6 cut(s) 34, 268, 354, 454, 561, 844
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 1 cut(s) 655
HpyCH4III ACNGT 6 cut(s) 169, 281, 337, 395, 583, 805
HpyCH4V TGCA 5 cut(s) 354, 359, 365, 545, 626
HpyF10VI GCNNNNNNNGC 1 cut(s) 169
HpyF3I CTNAG 5 cut(s) 195, 220, 240, 821, 948
Hsp92I GRCGYC 2 cut(s) 6, 30
Hsp92II CATG 2 cut(s) 158, 711
KroI GCCGGC 1 cut(s) 979
KroNI GCCGGC 1 cut(s) 981
Kzo9I GATC 5 cut(s) 80, 286, 679, 877, 1020
LmnI GCTCC 3 cut(s) 99, 305, 436
Lsp1109I GCAGC 1 cut(s) 610
MaeI CTAG 4 cut(s) 66, 186, 735, 1126
MaeIII GTNAC 6 cut(s) 75, 319, 583, 727, 927, 1059
MalI GATC 5 cut(s) 82, 288, 681, 879, 1022
MboI GATC 5 cut(s) 80, 286, 679, 877, 1020
MboII GAAGA 7 cut(s) 107, 122, 677, 680, 715, 888, 1126
MfeI CAATTG 1 cut(s) 984
MflI RGATCY 1 cut(s) 877
MhlI GDGCHC 2 cut(s) 356, 822
MlsI TGGCCA 1 cut(s) 153
MluCI AATT 5 cut(s) 47, 716, 762, 901, 984
MluNI TGGCCA 1 cut(s) 153
MlyI GAGTC 1 cut(s) 839
MmeI TCCRAC 1 cut(s) 81
Mox20I TGGCCA 1 cut(s) 153
MroNI GCCGGC 1 cut(s) 979
MscI TGGCCA 1 cut(s) 153
MseI TTAA 3 cut(s) 387, 923, 1103
Msp20I TGGCCA 1 cut(s) 153
MspI CCGG 2 cut(s) 86, 980
MspR9I CCNGG 1 cut(s) 1025
MunI CAATTG 1 cut(s) 984
Mva1269I GAATGC 1 cut(s) 833
MvaI CCWGG 1 cut(s) 1025
MvnI CGCG 1 cut(s) 874
MwoI GCNNNNNNNGC 1 cut(s) 169
NaeI GCCGGC 1 cut(s) 981
NcoI CCATGG 1 cut(s) 154
NdeI CATATG 1 cut(s) 529
NdeII GATC 5 cut(s) 80, 286, 679, 877, 1020
NgoMIV GCCGGC 1 cut(s) 979
NlaIII CATG 2 cut(s) 158, 711
NlaIV GGNNCC 4 cut(s) 90, 307, 879, 1040
NmuCI GTSAC 4 cut(s) 75, 727, 927, 1059
NspI RCATGY 1 cut(s) 711
PctI GAATGC 1 cut(s) 833
PdiI GCCGGC 1 cut(s) 981
PfoI TCCNGGA 1 cut(s) 1023
PkrI GCNGC 1 cut(s) 625
PleI GAGTC 1 cut(s) 839
PpsI GAGTC 1 cut(s) 839
Psp124BI GAGCTC 1 cut(s) 822
Psp6I CCWGG 1 cut(s) 1023
PspFI CCCAGC 2 cut(s) 422, 1091
PspGI CCWGG 1 cut(s) 1023
PspN4I GGNNCC 4 cut(s) 90, 307, 879, 1040
PspPI GGNCC 1 cut(s) 88
PstI CTGCAG 1 cut(s) 361
PsuI RGATCY 1 cut(s) 877
RsaI GTAC 1 cut(s) 488
RsaNI GTAC 1 cut(s) 487
SacI GAGCTC 1 cut(s) 822
SalI GTCGAC 1 cut(s) 842
SaqAI TTAA 3 cut(s) 387, 923, 1103
SatI GCNGC 1 cut(s) 624
Sau3AI GATC 5 cut(s) 80, 286, 679, 877, 1020
Sau96I GGNCC 1 cut(s) 88
ScaI AGTACT 1 cut(s) 488
SchI GAGTC 1 cut(s) 839
ScrFI CCNGG 1 cut(s) 1025
SduI GDGCHC 2 cut(s) 356, 822
SfcI CTRYAG 2 cut(s) 336, 357
Sse9I AATT 5 cut(s) 47, 716, 762, 901, 984
SsiI CCGC 3 cut(s) 139, 732, 874
SspMI CTAG 4 cut(s) 66, 186, 735, 1126
SstI GAGCTC 1 cut(s) 822
StyD4I CCNGG 1 cut(s) 1023
StyI CCWWGG 2 cut(s) 65, 154
TaaI ACNGT 6 cut(s) 169, 281, 337, 395, 583, 805
TaqI TCGA 2 cut(s) 751, 843
TaqII GACCGA 1 cut(s) 425
TasI AATT 5 cut(s) 47, 716, 762, 901, 984
TatI WGTACW 1 cut(s) 486
Tru1I TTAA 3 cut(s) 387, 923, 1103
Tru9I TTAA 3 cut(s) 387, 923, 1103
TscAI CASTG 4 cut(s) 361, 456, 667, 829
TseFI GTSAC 4 cut(s) 75, 727, 927, 1059
TseI GCWGC 1 cut(s) 623
Tsp45I GTSAC 4 cut(s) 75, 727, 927, 1059
TspDTI ATGAA 4 cut(s) 516, 709, 874, 1127
TspGWI ACGGA 2 cut(s) 4, 1067
TspRI CASTG 4 cut(s) 361, 456, 667, 829
VneI GTGCAC 1 cut(s) 352
XapI RAATTY 1 cut(s) 716
XbaI TCTAGA 1 cut(s) 185
XceI RCATGY 1 cut(s) 711
XmaJI CCTAGG 1 cut(s) 65
XmiI GTMKAC 1 cut(s) 843
XspI CTAG 4 cut(s) 66, 186, 735, 1126
ZrmI AGTACT 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.