Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002679

Physical Location & Seq

Genomic Coordinates Reverse (-)

20463150 .. 20471124

Gene Structure 7975 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1129500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGATGGGCACGGCTTCCGTCATCCATAACGGCGTCCACATCCATCTGAAGCTCAATTCCCGCCTGCCTAGGCTTTCATCGCCATATCCATCCCCAAATTGGAGTAGGCCCCACTTCGTTCACAATCACATCGTTTCCGTCCGTACAGAAGAAAAGAGGGGCGATTCTGCGTCATGTGATGGCATTAGTAATGTGGAAATCTCTCATGATGACTCTCCGGAGAAAATTAAGGGGCGCGAAGCTTATGCTGCTTCTGCAAAAACTGTAGCCTTGTGGGTGTGTGCTGCGGTAGCATTTGGTATTGGTGTGGGATTTAAAGACGGAGTTGGCAAGGCGACGGAGTTCATTTCAGGGTATTTACTGGAACAAAGCTTGTCAGTAGACAATCTTTTTGTCTTTGTTCTAGTTTTCAAGTACTTCAAAGTGCCACTTATGTATCAGGTTTGCTCTCTGAACTACAGAATCGGGTACTTTCATATGGTATTGCCGGAGCAGTGGTCTTTCGTTTCCCCAACCACACTTGAGAGGTTTGAGGTGGTAAATCTTTTCCTGGCCTCAGTACTCCTTTACTCATCAATCAAGCTATTTTCCAGTGAAGAAGATGACACTGATCTATCCAACAATTTTATTGTGAAGACATGCCAGAGATTTATCCCTGTCACATCTACTTATGATGTCAATCGATTCTTTACATTTCAAGATGGTGTCCGGAAGGCCACACCTTTACTTCTCACGGTAGCAGTTATCGAGCTCAGTGACGTAGCATTCGCTGTCGACTCTATACCAGCAGTATTTGGCGTTACTAGGGATCCTTTTATAGTTTCCAGTTCTAATCTTTTTGCCATCGTAGGTTTAAGGTCGCTTTACAGACTCATTTCGGAGGGTATGTCAGACTTGGAGTATTTGCAGCCTTCAATTGCTGTTGTTTTGAGCTTTATCGGGTGGTTCCACGTATCGACCGAGGTGTCTCTTGGCTTTGTAGCTACAAGTACAAATAAAAAGGGGAGAATGAACTTAGCCTCATATTGTAATAGCAATAATGGATTTGCTTTCAATGAAAATCGAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009791 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0055035 GO:0061024 GO:0071840 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TerC

Protein Analysis

357

Amino Acids

39.59

Weight (kDa)

6.51

Isoelectric Point (pI)

38.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TerC	PF03741	117 - 314	3.3e-32	Integral membrane protein TerC family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12130 AT5G12130
fragaria_vesca	FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940
malus_domestica	MD04G1111300.v1.1 MD12G1129500.v1.1
prunus_persica	Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1
pyrus_communis	pycom04g10350
rosa_chinensis	RchiOBHm_Chr2g0168111 RchiOBHm_Chr3g0468141
rosa_laevigata	RLG00000024445
rosa_multiflora	Rmu_sc0003659.1_g000009 Rmu_sc0005191.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412990
rosa_rugosa	Rorug03G0093600 Rorug03G0093700
rosa_samantha	Rh3AG141500 Rh3AG215500 Rh3BG163000 Rh3DG163500 Rh5BG496900 Rh6AG253800 Rh6BG009600
rosa_wichuraiana	Rw0G015560 Rw3G013370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	964
AccI	GTMKAC	2 cut(s)	381, 774
AccII	CGCG	1 cut(s)	237
AccIII	TCCGGA	2 cut(s)	217, 708
AciI	CCGC	2 cut(s)	61, 287
AclWI	GGATC	2 cut(s)	803, 816
AcuI	CTGAAG	1 cut(s)	68
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	5 cut(s)	145, 416, 470, 561, 991
AfiI	CCNNNNNNNGG	1 cut(s)	99
AgsI	TTSAA	5 cut(s)	412, 421, 698, 915, 1054
AjnI	CCWGG	1 cut(s)	549
AluBI	AGCT	7 cut(s)	52, 242, 372, 583, 751, 933, 983
AluI	AGCT	7 cut(s)	52, 242, 372, 583, 751, 933, 983
Alw21I	GWGCWC	1 cut(s)	753
Alw26I	GTCTC	1 cut(s)	972
AlwI	GGATC	2 cut(s)	803, 816
Aor13HI	TCCGGA	2 cut(s)	217, 708
AoxI	GGCC	3 cut(s)	107, 552, 714
ApeKI	GCWGC	3 cut(s)	248, 284, 907
ArsI	GACNNNNNNTTYG	4 cut(s)	374, 406, 749, 781
AspA2I	CCTAGG	1 cut(s)	68
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	1 cut(s)	108
AvrII	CCTAGG	1 cut(s)	68
BaeGI	GKGCMC	1 cut(s)	11
BaeI	ACNNNNGTAYC	2 cut(s)	419, 452
BamHI	GGATCC	1 cut(s)	808
BanII	GRGCYC	1 cut(s)	753
BbsI	GAAGAC	1 cut(s)	641
Bbv12I	GWGCWC	1 cut(s)	753
BbvI	GCAGC	3 cut(s)	235, 271, 919
BccI	CCATC	5 cut(s)	51, 97, 173, 695, 851
BceAI	ACGGC	2 cut(s)	27, 46
BcgI	CGANNNNNNTGC	2 cut(s)	227, 261
BciT130I	CCWGG	1 cut(s)	551
BcoDI	GTCTC	1 cut(s)	972
BfaI	CTAG	3 cut(s)	69, 404, 804
BfmI	CTRYAG	2 cut(s)	264, 457
BisI	GCNGC	3 cut(s)	249, 285, 908
BlnI	CCTAGG	1 cut(s)	68
BlsI	GCNGC	3 cut(s)	250, 286, 909
BmcAI	AGTACT	2 cut(s)	416, 561
Bme1390I	CCNGG	1 cut(s)	551
BmgT120I	GGNCC	1 cut(s)	108
BmiI	GGNNCC	3 cut(s)	110, 810, 947
BmrFI	CCNGG	1 cut(s)	551
BpiI	GAAGAC	1 cut(s)	641
BpuEI	CTTGAG	1 cut(s)	542
Bsa29I	ATCGAT	1 cut(s)	682
BsaAI	YACGTR	1 cut(s)	952
BsaBI	GATNNNNATC	1 cut(s)	678
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	68, 960
BsaWI	WCCGGW	2 cut(s)	217, 708
BsaXI	ACNNNNNCTCC	4 cut(s)	482, 512, 872, 902
Bsc4I	CCNNNNNNNGG	1 cut(s)	99
Bse1I	ACTGG	3 cut(s)	366, 591, 825
Bse8I	GATNNNNATC	1 cut(s)	678
BseAI	TCCGGA	2 cut(s)	217, 708
BseBI	CCWGG	1 cut(s)	551
BseCI	ATCGAT	1 cut(s)	682
BseDI	CCNNGG	2 cut(s)	68, 960
BseGI	GGATG	3 cut(s)	21, 39, 89
BseJI	GATNNNNATC	1 cut(s)	678
BseLI	CCNNNNNNNGG	1 cut(s)	99
BseMII	CTCAG	2 cut(s)	570, 766
BseNI	ACTGG	3 cut(s)	366, 591, 825
BseSI	GKGCMC	1 cut(s)	11
BseXI	GCAGC	3 cut(s)	235, 271, 919
Bsh1236I	CGCG	1 cut(s)	237
Bsh1285I	CGRYCG	1 cut(s)	960
BshFI	GGCC	3 cut(s)	109, 554, 716
BshVI	ATCGAT	1 cut(s)	682
BsiEI	CGRYCG	1 cut(s)	960
BsiHKAI	GWGCWC	1 cut(s)	753
BsiSI	CCGG	3 cut(s)	218, 488, 709
BslI	CCNNNNNNNGG	1 cut(s)	99
BsmAI	GTCTC	1 cut(s)	972
BsmI	GAATGC	1 cut(s)	764
BsnI	GGCC	3 cut(s)	109, 554, 716
Bsp1286I	GDGCHC	2 cut(s)	11, 753
Bsp13I	TCCGGA	2 cut(s)	217, 708
Bsp143I	GATC	2 cut(s)	610, 808
BspACI	CCGC	2 cut(s)	61, 287
BspANI	GGCC	3 cut(s)	109, 554, 716
BspCNI	CTCAG	2 cut(s)	569, 765
BspDI	ATCGAT	1 cut(s)	682
BspEI	TCCGGA	2 cut(s)	217, 708
BspFNI	CGCG	1 cut(s)	237
BspHI	TCATGA	1 cut(s)	205
BspLI	GGNNCC	3 cut(s)	110, 810, 947
BspPI	GGATC	2 cut(s)	803, 816
BsrI	ACTGG	3 cut(s)	366, 591, 825
BssECI	CCNNGG	2 cut(s)	68, 960
BssMI	GATC	2 cut(s)	610, 808
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	68
Bst2UI	CCWGG	1 cut(s)	551
Bst4CI	ACNGT	2 cut(s)	265, 736
BstACI	GRCGYC	1 cut(s)	33
BstBAI	YACGTR	1 cut(s)	952
BstC8I	GCNNGC	1 cut(s)	65
BstDEI	CTNAG	3 cut(s)	556, 752, 1015
BstF5I	GGATG	3 cut(s)	21, 39, 89
BstFNI	CGCG	1 cut(s)	237
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	2 cut(s)	613, 811
BstMAI	GTCTC	1 cut(s)	972
BstMBI	GATC	2 cut(s)	610, 808
BstMCI	CGRYCG	1 cut(s)	960
BstMWI	GCNNNNNNNGC	4 cut(s)	79, 248, 254, 290
BstNI	CCWGG	1 cut(s)	551
BstNSI	RCATGY	1 cut(s)	642
BstSCI	CCNGG	1 cut(s)	549
BstSFI	CTRYAG	2 cut(s)	264, 457
BstSLI	GKGCMC	1 cut(s)	11
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	3 cut(s)	235, 271, 919
BstV2I	GAAGAC	1 cut(s)	641
BstX2I	RGATCY	1 cut(s)	808
BstYI	RGATCY	1 cut(s)	808
Bsu15I	ATCGAT	1 cut(s)	682
BsuRI	GGCC	3 cut(s)	109, 554, 716
BsuTUI	ATCGAT	1 cut(s)	682
BtgZI	GCGATG	1 cut(s)	63
BtsCI	GGATG	3 cut(s)	21, 39, 89
BtsI	GCAGTG	1 cut(s)	500
BtsIMutI	CAGTG	4 cut(s)	500, 598, 606, 760
Cac8I	GCNNGC	1 cut(s)	65
CciI	TCATGA	1 cut(s)	205
CfoI	GCGC	1 cut(s)	237
Cfr13I	GGNCC	1 cut(s)	108
ClaI	ATCGAT	1 cut(s)	682
CseI	GACGC	2 cut(s)	22, 159
Csp6I	GTAC	5 cut(s)	144, 415, 469, 560, 990
CviAII	CATG	3 cut(s)	174, 206, 639
CviQI	GTAC	5 cut(s)	144, 415, 469, 560, 990
DdeI	CTNAG	3 cut(s)	556, 752, 1015
DpnI	GATC	2 cut(s)	612, 810
DpnII	GATC	2 cut(s)	610, 808
DraI	TTTAAA	1 cut(s)	316
DrdI	GACNNNNNNGTC	1 cut(s)	964
DseDI	GACNNNNNNGTC	1 cut(s)	964
Ecl136II	GAGCTC	1 cut(s)	751
Eco130I	CCWWGG	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	753
Eco53kI	GAGCTC	1 cut(s)	751
Eco57I	CTGAAG	1 cut(s)	68
EcoICRI	GAGCTC	1 cut(s)	751
EcoO109I	RGGNCCY	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	549
EcoT14I	CCWWGG	1 cut(s)	68
EcoT38I	GRGCYC	1 cut(s)	753
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	3 cut(s)	177, 209, 642
FalI	AAGNNNNNCTT	2 cut(s)	414, 446
FatI	CATG	3 cut(s)	173, 205, 638
FauI	CCCGC	1 cut(s)	68
FauNDI	CATATG	1 cut(s)	477
FblI	GTMKAC	2 cut(s)	381, 774
Fnu4HI	GCNGC	3 cut(s)	249, 285, 908
FokI	GGATG	3 cut(s)	8, 26, 76
FriOI	GRGCYC	1 cut(s)	753
Fsp4HI	GCNGC	3 cut(s)	249, 285, 908
FspBI	CTAG	3 cut(s)	69, 404, 804
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	3 cut(s)	249, 285, 908
HaeIII	GGCC	3 cut(s)	109, 554, 716
HapII	CCGG	3 cut(s)	218, 488, 709
HgaI	GACGC	2 cut(s)	22, 159
HhaI	GCGC	1 cut(s)	237
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	3 cut(s)	177, 209, 642
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HincII	GTYRAC	1 cut(s)	775
HindII	GTYRAC	1 cut(s)	775
HindIII	AAGCTT	2 cut(s)	240, 370
HinfI	GANTC	6 cut(s)	164, 212, 462, 684, 776, 870
HpaII	CCGG	3 cut(s)	218, 488, 709
Hpy166II	GTNNAC	4 cut(s)	37, 121, 382, 775
Hpy188I	TCNGA	4 cut(s)	48, 453, 880, 892
Hpy188III	TCNNGA	4 cut(s)	206, 218, 698, 709
Hpy8I	GTNNAC	4 cut(s)	37, 121, 382, 775
Hpy99I	CGWCG	1 cut(s)	340
HpyAV	CCTTC	2 cut(s)	706, 921
HpyCH4III	ACNGT	2 cut(s)	265, 736
HpyCH4IV	ACGT	2 cut(s)	759, 951
HpyCH4V	TGCA	2 cut(s)	257, 907
HpyF10VI	GCNNNNNNNGC	4 cut(s)	79, 248, 254, 290
HpyF3I	CTNAG	3 cut(s)	556, 752, 1015
HpySE526I	ACGT	2 cut(s)	759, 951
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	3 cut(s)	177, 209, 642
HspAI	GCGC	1 cut(s)	235
Kpn2I	TCCGGA	2 cut(s)	217, 708
Kzo9I	GATC	2 cut(s)	610, 808
LmnI	GCTCC	1 cut(s)	490
Lsp1109I	GCAGC	3 cut(s)	235, 271, 919
MaeI	CTAG	3 cut(s)	69, 404, 804
MaeII	ACGT	2 cut(s)	759, 951
MaeIII	GTNAC	3 cut(s)	658, 755, 799
MalI	GATC	2 cut(s)	612, 810
MboI	GATC	2 cut(s)	610, 808
MboII	GAAGA	4 cut(s)	161, 608, 611, 646
MfeI	CAATTG	1 cut(s)	915
MflI	RGATCY	1 cut(s)	808
MhlI	GDGCHC	2 cut(s)	11, 753
MluCI	AATT	5 cut(s)	55, 97, 225, 622, 915
MlyI	GAGTC	3 cut(s)	206, 770, 864
MmeI	TCCRAC	1 cut(s)	642
MnlI	CCTC	7 cut(s)	150, 519, 526, 565, 874, 955, 1030
MroI	TCCGGA	2 cut(s)	217, 708
MseI	TTAA	4 cut(s)	228, 315, 854, 1069
MspI	CCGG	3 cut(s)	218, 488, 709
MspR9I	CCNGG	1 cut(s)	551
MunI	CAATTG	1 cut(s)	915
Mva1269I	GAATGC	1 cut(s)	764
MvaI	CCWGG	1 cut(s)	551
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	4 cut(s)	79, 248, 254, 290
NdeI	CATATG	1 cut(s)	477
NdeII	GATC	2 cut(s)	610, 808
NlaIII	CATG	3 cut(s)	177, 209, 642
NlaIV	GGNNCC	3 cut(s)	110, 810, 947
NmuCI	GTSAC	2 cut(s)	658, 755
NspI	RCATGY	1 cut(s)	642
PagI	TCATGA	1 cut(s)	205
PcsI	WCGNNNNNNNCGW	1 cut(s)	957
PctI	GAATGC	1 cut(s)	764
PfeI	GAWTC	3 cut(s)	164, 462, 684
PkrI	GCNGC	3 cut(s)	250, 286, 909
PleI	GAGTC	3 cut(s)	206, 770, 864
PpsI	GAGTC	3 cut(s)	206, 770, 864
Ppu21I	YACGTR	1 cut(s)	952
Psp124BI	GAGCTC	1 cut(s)	753
Psp6I	CCWGG	1 cut(s)	549
PspGI	CCWGG	1 cut(s)	549
PspN4I	GGNNCC	3 cut(s)	110, 810, 947
PspPI	GGNCC	1 cut(s)	108
PsuI	RGATCY	1 cut(s)	808
RsaI	GTAC	5 cut(s)	145, 416, 470, 561, 991
RsaNI	GTAC	5 cut(s)	144, 415, 469, 560, 990
SacI	GAGCTC	1 cut(s)	753
SalI	GTCGAC	1 cut(s)	773
SaqAI	TTAA	4 cut(s)	228, 315, 854, 1069
SatI	GCNGC	3 cut(s)	249, 285, 908
Sau3AI	GATC	2 cut(s)	610, 808
Sau96I	GGNCC	1 cut(s)	108
ScaI	AGTACT	2 cut(s)	416, 561
SchI	GAGTC	3 cut(s)	206, 770, 864
ScrFI	CCNGG	1 cut(s)	551
SduI	GDGCHC	2 cut(s)	11, 753
SfcI	CTRYAG	2 cut(s)	264, 457
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
Sse9I	AATT	5 cut(s)	55, 97, 225, 622, 915
SsiI	CCGC	2 cut(s)	61, 287
SspMI	CTAG	3 cut(s)	69, 404, 804
SstI	GAGCTC	1 cut(s)	753
StyD4I	CCNGG	1 cut(s)	549
StyI	CCWWGG	1 cut(s)	68
TaaI	ACNGT	2 cut(s)	265, 736
TaiI	ACGT	2 cut(s)	762, 954
TaqI	TCGA	5 cut(s)	682, 747, 774, 956, 1063
TaqII	GACCGA	1 cut(s)	974
TasI	AATT	5 cut(s)	55, 97, 225, 622, 915
TatI	WGTACW	3 cut(s)	414, 559, 989
TfiI	GAWTC	3 cut(s)	164, 462, 684
Tru1I	TTAA	4 cut(s)	228, 315, 854, 1069
Tru9I	TTAA	4 cut(s)	228, 315, 854, 1069
TscAI	CASTG	4 cut(s)	500, 598, 613, 760
TseFI	GTSAC	2 cut(s)	658, 755
TseI	GCWGC	3 cut(s)	248, 284, 907
Tsp45I	GTSAC	2 cut(s)	658, 755
TspDTI	ATGAA	5 cut(s)	66, 334, 464, 1025, 1071
TspGWI	ACGGA	5 cut(s)	7, 127, 131, 336, 353
TspRI	CASTG	4 cut(s)	500, 598, 613, 760
XceI	RCATGY	1 cut(s)	642
XcmI	CCANNNNNNNNNTGG	1 cut(s)	96
XmaJI	CCTAGG	1 cut(s)	68
XmiI	GTMKAC	2 cut(s)	381, 774
XspI	CTAG	3 cut(s)	69, 404, 804
ZrmI	AGTACT	2 cut(s)	416, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.