Rh3AG141500

Integral membrane protein TerC family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0002679
Physical Location & Seq
Forward (+)
12406802 .. 12411045
4244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG141500.1

Sequence Viewer

Length: 942 bp
ATGGGCGTGGCTTCCGTCATCCACAACGGCGTTCGCATTCCTCTCAAATTCAACTCCGACCTTCCTAGGGTTTCATCGCGATCCCCAGCCCCAAAATGGAGCAGACCTCACTCCATTCACCATCTTGTTCTTCGCCTCCGCACAGGTGGTGGTCGTGGTCGACAGTCTGTGCCAATCGTGTGTTCTAGAGCAACTGAGCAGGACGATGATGTATTTACTTCAGAAGGCGAGAGGATTGATCCTCAGTCATATGATGGCATTAGTAATGTGGACACTTCTCACACTTCCACTCCGGATAAATCTAAGGGAGCTGAAGCTTATGTTACTTCTGTAAGAACTGTAGCTTTTTGGGTGTGTGCAGCGGTAGCATTTGGAGTTGGTGTGGGTTTTAAAGACGGTGTTGGCAAGGCAACCGAGTTTTTTGCCGGGTATTTACTGGAGCAAAGTTTGTCAGTGGATAACTTGTTTGTGTTTGTTCTGATTTTCAAGTACTTCAAAGTGCCACTTATGTATCAGGGTCGTGTTCTTTCATATGGTATTGCTGGTGCAATCATCTTTCGGTTGACATTAATACTACTCGGAACAGTCACACTCCAGAGGTTTGAGGCAGTAAATCTTTTCCTCGCTGCAATACTACTTTACTCATCCTTCAAGTTATTTTCCAGTGAAGAAGATGACACTGATCTATCTGACAACTTTGTTGTGAAGACATGCCAGAAATTTATCCCTGTCACCGCTGCTTATGATGGCAATCGATTTTTTACAATTCAAGAGGGTGTGTGGAAGGCCACACCTTTACTTCTCACGGTAGCAGTTATTGAGCTCAGTGATATAGCATTCGCTGTCGACTCTATACCAGCAGTTTTTGGAATTACTCGGGATCCTTTCATAGTTTTCACTTCTAATCTATTTGCCATCGTAGGTAATTCTTGTCAAATGTAG

Protein Analysis

313

Amino Acids

34.3

Weight (kDa)

6.52

Isoelectric Point (pI)

30.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TerC PF03741 141 - 308 1.2e-37 Integral membrane protein TerC family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 160, 846
AccII CGCG 1 cut(s) 79
AccIII TCCGGA 1 cut(s) 292
AciI CCGC 3 cut(s) 139, 362, 735
AclWI GGATC 4 cut(s) 75, 233, 875, 888
AcsI RAATTY 2 cut(s) 47, 719
AcuI CTGAAG 2 cut(s) 204, 333
AfaI GTAC 1 cut(s) 491
AfiI CCNNNNNNNGG 2 cut(s) 67, 96
AgsI TTSAA 5 cut(s) 52, 487, 496, 652, 770
AjuI GAANNNNNNNTTGG 2 cut(s) 166, 198
AluBI AGCT 4 cut(s) 311, 317, 344, 823
AluI AGCT 4 cut(s) 311, 317, 344, 823
Alw21I GWGCWC 1 cut(s) 825
AlwI GGATC 4 cut(s) 75, 233, 875, 888
Ama87I CYCGRG 1 cut(s) 876
Aor13HI TCCGGA 1 cut(s) 292
AoxI GGCC 1 cut(s) 786
ApeKI GCWGC 3 cut(s) 359, 626, 737
ApoI RAATTY 2 cut(s) 47, 719
AseI ATTAAT 1 cut(s) 569
AspA2I CCTAGG 1 cut(s) 65
AsuC2I CCSGG 1 cut(s) 427
AsuHPI GGTGA 2 cut(s) 110, 724
AvaI CYCGRG 1 cut(s) 876
AvrII CCTAGG 1 cut(s) 65
BaeI ACNNNNGTAYC 2 cut(s) 494, 527
BamHI GGATCC 1 cut(s) 880
BanII GRGCYC 1 cut(s) 825
BbsI GAAGAC 1 cut(s) 713
Bbv12I GWGCWC 1 cut(s) 825
BbvI GCAGC 3 cut(s) 371, 613, 724
BccI CCATC 4 cut(s) 129, 248, 740, 923
BceAI ACGGC 1 cut(s) 43
BcgI CGANNNNNNTGC 2 cut(s) 404, 438
BcnI CCSGG 1 cut(s) 427
BfaI CTAG 2 cut(s) 66, 186
BfmI CTRYAG 1 cut(s) 339
BisI GCNGC 3 cut(s) 360, 627, 738
BlnI CCTAGG 1 cut(s) 65
BlsI GCNGC 3 cut(s) 361, 628, 739
BmcAI AGTACT 1 cut(s) 491
Bme1390I CCNGG 1 cut(s) 427
BmeT110I CYCGRG 1 cut(s) 876
BmiI GGNNCC 1 cut(s) 882
BmrFI CCNGG 1 cut(s) 427
BpiI GAAGAC 1 cut(s) 713
BplI GAGNNNNNCTC 2 cut(s) 91, 123
BpmI CTGGAG 2 cut(s) 458, 578
BpuMI CCSGG 1 cut(s) 427
Bsa29I ATCGAT 1 cut(s) 754
BsaBI GATNNNNATC 1 cut(s) 750
BsaJI CCNNGG 1 cut(s) 65
BsaWI WCCGGW 1 cut(s) 292
BsaXI ACNNNNNCTCC 4 cut(s) 274, 304, 366, 396
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 96
Bse1I ACTGG 2 cut(s) 441, 663
Bse8I GATNNNNATC 1 cut(s) 750
BseAI TCCGGA 1 cut(s) 292
BseCI ATCGAT 1 cut(s) 754
BseDI CCNNGG 1 cut(s) 65
BseGI GGATG 2 cut(s) 18, 644
BseJI GATNNNNATC 1 cut(s) 750
BseLI CCNNNNNNNGG 2 cut(s) 67, 96
BseMII CTCAG 3 cut(s) 186, 257, 838
BseNI ACTGG 2 cut(s) 441, 663
BseXI GCAGC 3 cut(s) 371, 613, 724
BseYI CCCAGC 1 cut(s) 85
BsgI GTGCAG 1 cut(s) 378
Bsh1236I CGCG 1 cut(s) 79
BshFI GGCC 1 cut(s) 788
BshVI ATCGAT 1 cut(s) 754
BsiHKAI GWGCWC 1 cut(s) 825
BsiHKCI CYCGRG 1 cut(s) 876
BsiSI CCGG 2 cut(s) 293, 426
BslI CCNNNNNNNGG 2 cut(s) 67, 96
BsmI GAATGC 2 cut(s) 36, 836
BsnI GGCC 1 cut(s) 788
BsoBI CYCGRG 1 cut(s) 876
Bsp1286I GDGCHC 1 cut(s) 825
Bsp13I TCCGGA 1 cut(s) 292
Bsp143I GATC 4 cut(s) 80, 238, 682, 880
Bsp68I TCGCGA 1 cut(s) 79
BspACI CCGC 3 cut(s) 139, 362, 735
BspANI GGCC 1 cut(s) 788
BspCNI CTCAG 3 cut(s) 187, 256, 837
BspDI ATCGAT 1 cut(s) 754
BspEI TCCGGA 1 cut(s) 292
BspFNI CGCG 1 cut(s) 79
BspLI GGNNCC 1 cut(s) 882
BspPI GGATC 4 cut(s) 75, 233, 875, 888
BsrI ACTGG 2 cut(s) 441, 663
BssECI CCNNGG 1 cut(s) 65
BssMI GATC 4 cut(s) 80, 238, 682, 880
BssT1I CCWWGG 1 cut(s) 65
Bst4CI ACNGT 5 cut(s) 165, 340, 398, 586, 808
BstDEI CTNAG 4 cut(s) 195, 243, 303, 824
BstF5I GGATG 2 cut(s) 18, 644
BstFNI CGCG 1 cut(s) 79
BstKTI GATC 4 cut(s) 83, 241, 685, 883
BstMBI GATC 4 cut(s) 80, 238, 682, 880
BstMWI GCNNNNNNNGC 1 cut(s) 365
BstNSI RCATGY 1 cut(s) 714
BstSCI CCNGG 1 cut(s) 425
BstSFI CTRYAG 1 cut(s) 339
BstUI CGCG 1 cut(s) 79
BstV1I GCAGC 3 cut(s) 371, 613, 724
BstV2I GAAGAC 1 cut(s) 713
BstX2I RGATCY 1 cut(s) 880
BstYI RGATCY 1 cut(s) 880
Bsu15I ATCGAT 1 cut(s) 754
BsuRI GGCC 1 cut(s) 788
BsuTUI ATCGAT 1 cut(s) 754
BtgZI GCGATG 1 cut(s) 60
BtsCI GGATG 2 cut(s) 18, 644
BtsIMutI CAGTG 4 cut(s) 459, 670, 678, 832
BtuMI TCGCGA 1 cut(s) 79
ClaI ATCGAT 1 cut(s) 754
Csp6I GTAC 1 cut(s) 490
CviAII CATG 1 cut(s) 711
CviJI RGCY 7 cut(s) 11, 89, 311, 317, 344, 788, 823
CviKI_1 RGCY 7 cut(s) 11, 89, 311, 317, 344, 788, 823
CviQI GTAC 1 cut(s) 490
DdeI CTNAG 4 cut(s) 195, 243, 303, 824
DpnI GATC 4 cut(s) 82, 240, 684, 882
DpnII GATC 4 cut(s) 80, 238, 682, 880
DraI TTTAAA 1 cut(s) 391
Ecl136II GAGCTC 1 cut(s) 823
Eco130I CCWWGG 1 cut(s) 65
Eco24I GRGCYC 1 cut(s) 825
Eco53kI GAGCTC 1 cut(s) 823
Eco57I CTGAAG 2 cut(s) 204, 333
Eco88I CYCGRG 1 cut(s) 876
EcoICRI GAGCTC 1 cut(s) 823
EcoT14I CCWWGG 1 cut(s) 65
EcoT38I GRGCYC 1 cut(s) 825
ErhI CCWWGG 1 cut(s) 65
FaeI CATG 1 cut(s) 714
FalI AAGNNNNNCTT 2 cut(s) 489, 521
FatI CATG 1 cut(s) 710
FauNDI CATATG 2 cut(s) 250, 532
FblI GTMKAC 2 cut(s) 160, 846
Fnu4HI GCNGC 3 cut(s) 360, 627, 738
FokI GGATG 2 cut(s) 5, 631
FriOI GRGCYC 1 cut(s) 825
Fsp4HI GCNGC 3 cut(s) 360, 627, 738
FspBI CTAG 2 cut(s) 66, 186
GluI GCNGC 3 cut(s) 360, 627, 738
GsaI CCCAGC 1 cut(s) 89
GsuI CTGGAG 2 cut(s) 458, 578
HaeIII GGCC 1 cut(s) 788
HapII CCGG 2 cut(s) 293, 426
Hin1II CATG 1 cut(s) 714
HincII GTYRAC 3 cut(s) 161, 564, 847
HindII GTYRAC 3 cut(s) 161, 564, 847
HindIII AAGCTT 1 cut(s) 315
HinfI GANTC 1 cut(s) 848
HpaII CCGG 2 cut(s) 293, 426
HphI GGTGA 2 cut(s) 110, 724
Hpy166II GTNNAC 4 cut(s) 161, 271, 564, 847
Hpy188I TCNGA 5 cut(s) 58, 223, 480, 581, 691
Hpy188III TCNNGA 6 cut(s) 78, 186, 293, 595, 770, 878
Hpy8I GTNNAC 4 cut(s) 161, 271, 564, 847
HpyAV CCTTC 4 cut(s) 71, 218, 658, 778
HpyCH4III ACNGT 5 cut(s) 165, 340, 398, 586, 808
HpyCH4V TGCA 3 cut(s) 359, 548, 629
HpyF10VI GCNNNNNNNGC 1 cut(s) 365
HpyF3I CTNAG 4 cut(s) 195, 243, 303, 824
Hsp92II CATG 1 cut(s) 714
Kpn2I TCCGGA 1 cut(s) 292
Kzo9I GATC 4 cut(s) 80, 238, 682, 880
LmnI GCTCC 3 cut(s) 99, 308, 439
Lsp1109I GCAGC 3 cut(s) 371, 613, 724
MaeI CTAG 2 cut(s) 66, 186
MaeIII GTNAC 3 cut(s) 322, 586, 730
MalI GATC 4 cut(s) 82, 240, 684, 882
MboI GATC 4 cut(s) 80, 238, 682, 880
MboII GAAGA 4 cut(s) 122, 680, 683, 718
MflI RGATCY 1 cut(s) 880
MhlI GDGCHC 1 cut(s) 825
MluCI AATT 5 cut(s) 47, 719, 765, 870, 925
MlyI GAGTC 1 cut(s) 842
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 9 cut(s) 51, 117, 146, 225, 252, 591, 598, 632, 766
MroI TCCGGA 1 cut(s) 292
MseI TTAA 2 cut(s) 390, 569
MspA1I CMGCKG 2 cut(s) 362, 737
MspI CCGG 2 cut(s) 293, 426
MspR9I CCNGG 1 cut(s) 427
Mva1269I GAATGC 2 cut(s) 36, 836
MvnI CGCG 1 cut(s) 79
MwoI GCNNNNNNNGC 1 cut(s) 365
NciI CCSGG 1 cut(s) 427
NdeI CATATG 2 cut(s) 250, 532
NdeII GATC 4 cut(s) 80, 238, 682, 880
NlaIII CATG 1 cut(s) 714
NlaIV GGNNCC 1 cut(s) 882
NmuCI GTSAC 2 cut(s) 586, 730
NruI TCGCGA 1 cut(s) 79
NspI RCATGY 1 cut(s) 714
PctI GAATGC 2 cut(s) 36, 836
PkrI GCNGC 3 cut(s) 361, 628, 739
PleI GAGTC 1 cut(s) 842
PpsI GAGTC 1 cut(s) 842
PshBI ATTAAT 1 cut(s) 569
Psp124BI GAGCTC 1 cut(s) 825
PspFI CCCAGC 1 cut(s) 85
PspN4I GGNNCC 1 cut(s) 882
PsuI RGATCY 1 cut(s) 880
RruI TCGCGA 1 cut(s) 79
RsaI GTAC 1 cut(s) 491
RsaNI GTAC 1 cut(s) 490
SacI GAGCTC 1 cut(s) 825
SalI GTCGAC 2 cut(s) 159, 845
SaqAI TTAA 2 cut(s) 390, 569
SatI GCNGC 3 cut(s) 360, 627, 738
Sau3AI GATC 4 cut(s) 80, 238, 682, 880
ScaI AGTACT 1 cut(s) 491
SchI GAGTC 1 cut(s) 842
ScrFI CCNGG 1 cut(s) 427
SduI GDGCHC 1 cut(s) 825
SfcI CTRYAG 1 cut(s) 339
Sse9I AATT 5 cut(s) 47, 719, 765, 870, 925
SsiI CCGC 3 cut(s) 139, 362, 735
SspMI CTAG 2 cut(s) 66, 186
SstI GAGCTC 1 cut(s) 825
StyD4I CCNGG 1 cut(s) 425
StyI CCWWGG 1 cut(s) 65
TaaI ACNGT 5 cut(s) 165, 340, 398, 586, 808
TaqI TCGA 3 cut(s) 160, 754, 846
TasI AATT 5 cut(s) 47, 719, 765, 870, 925
TatI WGTACW 1 cut(s) 489
Tru1I TTAA 2 cut(s) 390, 569
Tru9I TTAA 2 cut(s) 390, 569
TscAI CASTG 4 cut(s) 459, 670, 685, 832
TseFI GTSAC 2 cut(s) 586, 730
TseI GCWGC 3 cut(s) 359, 626, 737
Tsp45I GTSAC 2 cut(s) 586, 730
TspDTI ATGAA 3 cut(s) 63, 519, 877
TspGWI ACGGA 1 cut(s) 4
TspRI CASTG 4 cut(s) 459, 670, 685, 832
VspI ATTAAT 1 cut(s) 569
XapI RAATTY 2 cut(s) 47, 719
XbaI TCTAGA 1 cut(s) 185
XceI RCATGY 1 cut(s) 714
XcmI CCANNNNNNNNNTGG 1 cut(s) 93
XmaJI CCTAGG 1 cut(s) 65
XmiI GTMKAC 2 cut(s) 160, 846
XspI CTAG 2 cut(s) 66, 186
ZrmI AGTACT 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.