Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005191.1

Orthogroup ID

OG0002679

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3043

Gene Structure 3043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005191.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 776 bp

ggtttcatcacgatccccagccccaaaatggagcagacctcacgcgatccccagccccaaaatggtgcagacctcactccattcaccatcttgttcttcgcctccgcacaggtggtggtcgtggtcgacagtctgtgccaatcgtgtgttctagagcaactgagcaggacgatgatgtatttacttcagaaggcgagaggattgatcctcagtcatatgatggcattagtaatgtggacacttctcacacttccactccggataaatctaagggagctgaagcttatgttacttctgtgtgtgcagcggtagcatttggagttggtgtgggttttaaagacggtgttggcaaggcaaccgagttttttgctgggtatttactggagcaaagtttgtcagtggataacttgtttgtgtttgttctgattttcaagtacttcaaagtgccacttatgtatcagggtcgtgttctttcatatggtattgctggtgcaatcatctttcggttgacattaatactactcggaacagtcacactccagaggtttgaggcagtaaatcttttcctcgctgcaatactactttactcatccttcaagttattttccagtgaagaagatgacactgatctatctgacaactttgttgtgaagacatgccagaaatttatccctgtcaccgctgcttatgatggcaatcgattttttacaattcaagagggtgtgtggaaggtgtcaaacattttgggcaggccacacctttacttctcacggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009791 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0055035 GO:0061024 GO:0071840 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TerC

Protein Analysis

257

Amino Acids

28.5

Weight (kDa)

6.72

Isoelectric Point (pI)

33.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12130 AT5G12130
fragaria_vesca	FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940
malus_domestica	MD04G1111300.v1.1 MD12G1129500.v1.1
prunus_persica	Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1
pyrus_communis	pycom04g10350
rosa_chinensis	RchiOBHm_Chr2g0168111 RchiOBHm_Chr3g0468141
rosa_laevigata	RLG00000024445
rosa_multiflora	Rmu_sc0003659.1_g000009 Rmu_sc0005191.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412990
rosa_rugosa	Rorug03G0093600 Rorug03G0093700
rosa_samantha	Rh3AG141500 Rh3AG215500 Rh3BG163000 Rh3DG163500 Rh5BG496900 Rh6AG253800 Rh6BG009600
rosa_wichuraiana	Rw0G015560 Rw3G013370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	126
AccII	CGCG	1 cut(s)	45
AccIII	TCCGGA	1 cut(s)	258
AciI	CCGC	3 cut(s)	105, 307, 680
AclWI	GGATC	3 cut(s)	7, 41, 199
AcsI	RAATTY	1 cut(s)	664
AcuI	CTGAAG	2 cut(s)	170, 299
AfaI	GTAC	1 cut(s)	436
AfiI	CCNNNNNNNGG	2 cut(s)	28, 62
AgsI	TTSAA	4 cut(s)	432, 441, 597, 715
AjuI	GAANNNNNNNTTGG	2 cut(s)	132, 164
AluBI	AGCT	2 cut(s)	277, 283
AluI	AGCT	2 cut(s)	277, 283
AlwI	GGATC	3 cut(s)	7, 41, 199
Aor13HI	TCCGGA	1 cut(s)	258
AoxI	GGCC	1 cut(s)	751
ApeKI	GCWGC	3 cut(s)	304, 571, 682
ApoI	RAATTY	1 cut(s)	664
AseI	ATTAAT	1 cut(s)	514
AsuHPI	GGTGA	2 cut(s)	76, 669
BaeI	ACNNNNGTAYC	2 cut(s)	439, 472
BbsI	GAAGAC	1 cut(s)	658
BbvI	GCAGC	3 cut(s)	316, 558, 669
BccI	CCATC	3 cut(s)	95, 214, 685
BcgI	CGANNNNNNTGC	2 cut(s)	349, 383
BfaI	CTAG	1 cut(s)	152
BisI	GCNGC	3 cut(s)	305, 572, 683
BlsI	GCNGC	3 cut(s)	306, 573, 684
BmcAI	AGTACT	1 cut(s)	436
BpiI	GAAGAC	1 cut(s)	658
BplI	GAGNNNNNCTC	2 cut(s)	23, 55
BpmI	CTGGAG	2 cut(s)	403, 523
Bsa29I	ATCGAT	1 cut(s)	699
BsaBI	GATNNNNATC	1 cut(s)	695
BsaWI	WCCGGW	1 cut(s)	258
BsaXI	ACNNNNNCTCC	4 cut(s)	240, 270, 311, 341
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 62
Bse1I	ACTGG	2 cut(s)	386, 608
Bse8I	GATNNNNATC	1 cut(s)	695
BseAI	TCCGGA	1 cut(s)	258
BseCI	ATCGAT	1 cut(s)	699
BseGI	GGATG	1 cut(s)	589
BseJI	GATNNNNATC	1 cut(s)	695
BseLI	CCNNNNNNNGG	2 cut(s)	28, 62
BseMII	CTCAG	2 cut(s)	152, 223
BseNI	ACTGG	2 cut(s)	386, 608
BseXI	GCAGC	3 cut(s)	316, 558, 669
BseYI	CCCAGC	3 cut(s)	17, 51, 370
BsgI	GTGCAG	2 cut(s)	87, 323
Bsh1236I	CGCG	1 cut(s)	45
BshFI	GGCC	1 cut(s)	753
BshVI	ATCGAT	1 cut(s)	699
BsiSI	CCGG	1 cut(s)	259
BslI	CCNNNNNNNGG	2 cut(s)	28, 62
BsnI	GGCC	1 cut(s)	753
Bsp13I	TCCGGA	1 cut(s)	258
Bsp143I	GATC	4 cut(s)	12, 46, 204, 627
BspACI	CCGC	3 cut(s)	105, 307, 680
BspANI	GGCC	1 cut(s)	753
BspCNI	CTCAG	2 cut(s)	153, 222
BspDI	ATCGAT	1 cut(s)	699
BspEI	TCCGGA	1 cut(s)	258
BspFNI	CGCG	1 cut(s)	45
BspPI	GGATC	3 cut(s)	7, 41, 199
BsrI	ACTGG	2 cut(s)	386, 608
BssMI	GATC	4 cut(s)	12, 46, 204, 627
Bst4CI	ACNGT	4 cut(s)	131, 343, 531, 773
BstC8I	GCNNGC	1 cut(s)	751
BstDEI	CTNAG	3 cut(s)	161, 209, 269
BstF5I	GGATG	1 cut(s)	589
BstFNI	CGCG	1 cut(s)	45
BstKTI	GATC	4 cut(s)	15, 49, 207, 630
BstMBI	GATC	4 cut(s)	12, 46, 204, 627
BstMWI	GCNNNNNNNGC	1 cut(s)	310
BstNSI	RCATGY	1 cut(s)	659
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	3 cut(s)	316, 558, 669
BstV2I	GAAGAC	1 cut(s)	658
Bsu15I	ATCGAT	1 cut(s)	699
BsuRI	GGCC	1 cut(s)	753
BsuTUI	ATCGAT	1 cut(s)	699
BtsCI	GGATG	1 cut(s)	589
BtsIMutI	CAGTG	3 cut(s)	404, 615, 623
Cac8I	GCNNGC	1 cut(s)	751
ClaI	ATCGAT	1 cut(s)	699
Csp6I	GTAC	1 cut(s)	435
CviAII	CATG	1 cut(s)	656
CviJI	RGCY	5 cut(s)	21, 55, 277, 283, 753
CviKI_1	RGCY	5 cut(s)	21, 55, 277, 283, 753
CviQI	GTAC	1 cut(s)	435
DdeI	CTNAG	3 cut(s)	161, 209, 269
DpnI	GATC	4 cut(s)	14, 48, 206, 629
DpnII	GATC	4 cut(s)	12, 46, 204, 627
DraI	TTTAAA	1 cut(s)	336
Eco57I	CTGAAG	2 cut(s)	170, 299
FaeI	CATG	1 cut(s)	659
FaiI	YATR	8 cut(s)	216, 218, 287, 454, 477, 479, 657, 689
FalI	AAGNNNNNCTT	2 cut(s)	434, 466
FatI	CATG	1 cut(s)	655
FauNDI	CATATG	2 cut(s)	216, 477
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	3 cut(s)	305, 572, 683
FokI	GGATG	1 cut(s)	576
Fsp4HI	GCNGC	3 cut(s)	305, 572, 683
FspBI	CTAG	1 cut(s)	152
GluI	GCNGC	3 cut(s)	305, 572, 683
GsaI	CCCAGC	3 cut(s)	21, 55, 374
GsuI	CTGGAG	2 cut(s)	403, 523
HaeIII	GGCC	1 cut(s)	753
HapII	CCGG	1 cut(s)	259
Hin1II	CATG	1 cut(s)	659
HincII	GTYRAC	2 cut(s)	127, 509
HindII	GTYRAC	2 cut(s)	127, 509
HindIII	AAGCTT	1 cut(s)	281
HpaII	CCGG	1 cut(s)	259
HphI	GGTGA	2 cut(s)	76, 669
Hpy166II	GTNNAC	3 cut(s)	127, 237, 509
Hpy188I	TCNGA	4 cut(s)	189, 425, 526, 636
Hpy188III	TCNNGA	5 cut(s)	10, 152, 259, 540, 715
Hpy8I	GTNNAC	3 cut(s)	127, 237, 509
HpyAV	CCTTC	3 cut(s)	184, 603, 723
HpyCH4III	ACNGT	4 cut(s)	131, 343, 531, 773
HpyCH4V	TGCA	4 cut(s)	68, 304, 493, 574
HpyF10VI	GCNNNNNNNGC	1 cut(s)	310
HpyF3I	CTNAG	3 cut(s)	161, 209, 269
Hsp92II	CATG	1 cut(s)	659
Kpn2I	TCCGGA	1 cut(s)	258
Kzo9I	GATC	4 cut(s)	12, 46, 204, 627
LmnI	GCTCC	3 cut(s)	31, 274, 384
Lsp1109I	GCAGC	3 cut(s)	316, 558, 669
MaeI	CTAG	1 cut(s)	152
MaeIII	GTNAC	3 cut(s)	288, 531, 675
MalI	GATC	4 cut(s)	14, 48, 206, 629
MboI	GATC	4 cut(s)	12, 46, 204, 627
MboII	GAAGA	4 cut(s)	88, 625, 628, 663
MluCI	AATT	2 cut(s)	664, 710
MnlI	CCTC	9 cut(s)	49, 83, 112, 191, 218, 536, 543, 577, 711
MroI	TCCGGA	1 cut(s)	258
MseI	TTAA	2 cut(s)	335, 514
MspA1I	CMGCKG	2 cut(s)	307, 682
MspI	CCGG	1 cut(s)	259
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	1 cut(s)	310
NdeI	CATATG	2 cut(s)	216, 477
NdeII	GATC	4 cut(s)	12, 46, 204, 627
NlaIII	CATG	1 cut(s)	659
NmuCI	GTSAC	2 cut(s)	531, 675
NspI	RCATGY	1 cut(s)	659
PkrI	GCNGC	3 cut(s)	306, 573, 684
PshBI	ATTAAT	1 cut(s)	514
PspFI	CCCAGC	3 cut(s)	17, 51, 370
RsaI	GTAC	1 cut(s)	436
RsaNI	GTAC	1 cut(s)	435
SalI	GTCGAC	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	335, 514
SatI	GCNGC	3 cut(s)	305, 572, 683
Sau3AI	GATC	4 cut(s)	12, 46, 204, 627
ScaI	AGTACT	1 cut(s)	436
SetI	ASST	8 cut(s)	41, 75, 114, 279, 285, 547, 734, 761
Sse9I	AATT	2 cut(s)	664, 710
SsiI	CCGC	3 cut(s)	105, 307, 680
SspMI	CTAG	1 cut(s)	152
TaaI	ACNGT	4 cut(s)	131, 343, 531, 773
TaqI	TCGA	2 cut(s)	126, 699
TasI	AATT	2 cut(s)	664, 710
TatI	WGTACW	1 cut(s)	434
Tru1I	TTAA	2 cut(s)	335, 514
Tru9I	TTAA	2 cut(s)	335, 514
TscAI	CASTG	3 cut(s)	404, 615, 630
TseFI	GTSAC	2 cut(s)	531, 675
TseI	GCWGC	3 cut(s)	304, 571, 682
Tsp45I	GTSAC	2 cut(s)	531, 675
TspDTI	ATGAA	1 cut(s)	464
TspRI	CASTG	3 cut(s)	404, 615, 630
VspI	ATTAAT	1 cut(s)	514
XapI	RAATTY	1 cut(s)	664
XbaI	TCTAGA	1 cut(s)	151
XceI	RCATGY	1 cut(s)	659
XcmI	CCANNNNNNNNNTGG	2 cut(s)	25, 59
XmiI	GTMKAC	1 cut(s)	126
XspI	CTAG	1 cut(s)	152
ZrmI	AGTACT	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.