Rh3DG163500

Integral membrane protein TerC family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002679
Physical Location & Seq
Forward (+)
14147952 .. 14151309
3358 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG163500.1

Sequence Viewer

Length: 723 bp
ATGGGCGTGGCTTCCGTCATCCACAACGGCGTTCGCATTCCTCTCAAATTCAACTCCGACCTTCCTAGGGTTTCATCACGATCCCCAGCCCCAAAATGGAGCAGACCTTACTCCATTCACCATCTTGTTCTTCGCCTCCGCACAGGTGGTGGTCATGGTCGGCAGTCTGTGCCAATTGTGTGTTCTAGAGCAACGGAGCAGGACGATGATGTATTTACTTCAGAAGGCGAGAGGATTGATCCTCAGTCATATGATGGCATTAGTAATGTGGACACTTCTCACACTTCCACTCCGGATAAATCTAAGGGAGCTGAAGCCTACGTTACTTCTGTAAGAACTGTAGCTTTTTGGGTGTGTGCAGCGGTAGCATTTGGAGTTGGTGTGGGTTTTAAAGACGGCGTTGGCAAGGCAACCGAGTTTTTTGCCGGTGAAGAAGATGACACTGATCTATCTGACAACTTTGTTGTGAAGACATGCCAGAAATTTATCCCTGTCACCGCTGCTTATGATGGCAATCGATTTTTTACAATTCAAGAGGGTGTGTGGAAGGCCACACCTTTACTTCTCACGGTAGCAGTTATTGAGCTCAGTGATATAGCATTCGCTGTCGACTCTATACCAGCAGTTTTTGGAATTACTCGGGATCCTTTCATAGTTTTCACTTCCAATCTATTTGCCATCGTAGCCGTCAATCGGTGTTGTTCTGGGCTTTATTGGGTGTAA

Protein Analysis

240

Amino Acids

26.04

Weight (kDa)

5.72

Isoelectric Point (pI)

30.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TerC PF03741 156 - 230 8e-14 Integral membrane protein TerC family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 609
AccIII TCCGGA 1 cut(s) 292
AciI CCGC 3 cut(s) 139, 362, 498
AclWI GGATC 4 cut(s) 75, 233, 638, 651
AcsI RAATTY 2 cut(s) 47, 482
AcuI CTGAAG 2 cut(s) 204, 333
AfiI CCNNNNNNNGG 3 cut(s) 67, 96, 693
AgsI TTSAA 2 cut(s) 52, 533
AjuI GAANNNNNNNTTGG 2 cut(s) 166, 198
AluBI AGCT 3 cut(s) 311, 344, 586
AluI AGCT 3 cut(s) 311, 344, 586
Alw21I GWGCWC 1 cut(s) 588
AlwI GGATC 4 cut(s) 75, 233, 638, 651
Ama87I CYCGRG 1 cut(s) 639
Aor13HI TCCGGA 1 cut(s) 292
AoxI GGCC 1 cut(s) 549
ApeKI GCWGC 2 cut(s) 359, 500
ApoI RAATTY 2 cut(s) 47, 482
AspA2I CCTAGG 1 cut(s) 65
AsuHPI GGTGA 3 cut(s) 110, 440, 487
AvaI CYCGRG 1 cut(s) 639
AvrII CCTAGG 1 cut(s) 65
BamHI GGATCC 1 cut(s) 643
BanII GRGCYC 1 cut(s) 588
BbsI GAAGAC 1 cut(s) 476
Bbv12I GWGCWC 1 cut(s) 588
BbvI GCAGC 2 cut(s) 371, 487
BccI CCATC 4 cut(s) 129, 248, 503, 686
BceAI ACGGC 3 cut(s) 43, 412, 671
BcgI CGANNNNNNTGC 2 cut(s) 404, 438
BfaI CTAG 2 cut(s) 66, 186
BfmI CTRYAG 1 cut(s) 339
BisI GCNGC 2 cut(s) 360, 501
BlnI CCTAGG 1 cut(s) 65
BlsI GCNGC 2 cut(s) 361, 502
BmeT110I CYCGRG 1 cut(s) 639
BmiI GGNNCC 1 cut(s) 645
BpiI GAAGAC 1 cut(s) 476
Bsa29I ATCGAT 1 cut(s) 517
BsaBI GATNNNNATC 1 cut(s) 513
BsaJI CCNNGG 1 cut(s) 65
BsaWI WCCGGW 1 cut(s) 292
BsaXI ACNNNNNCTCC 4 cut(s) 274, 304, 366, 396
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 96, 693
Bse118I RCCGGY 1 cut(s) 425
Bse8I GATNNNNATC 1 cut(s) 513
BseAI TCCGGA 1 cut(s) 292
BseCI ATCGAT 1 cut(s) 517
BseDI CCNNGG 1 cut(s) 65
BseGI GGATG 1 cut(s) 18
BseJI GATNNNNATC 1 cut(s) 513
BseLI CCNNNNNNNGG 3 cut(s) 67, 96, 693
BseMII CTCAG 2 cut(s) 257, 601
BseXI GCAGC 2 cut(s) 371, 487
BseYI CCCAGC 1 cut(s) 85
BsgI GTGCAG 1 cut(s) 378
BshFI GGCC 1 cut(s) 551
BshVI ATCGAT 1 cut(s) 517
BsiHKAI GWGCWC 1 cut(s) 588
BsiHKCI CYCGRG 1 cut(s) 639
BsiSI CCGG 2 cut(s) 293, 426
BslI CCNNNNNNNGG 3 cut(s) 67, 96, 693
BsmI GAATGC 2 cut(s) 36, 599
BsnI GGCC 1 cut(s) 551
BsoBI CYCGRG 1 cut(s) 639
Bsp1286I GDGCHC 1 cut(s) 588
Bsp13I TCCGGA 1 cut(s) 292
Bsp143I GATC 4 cut(s) 80, 238, 445, 643
BspACI CCGC 3 cut(s) 139, 362, 498
BspANI GGCC 1 cut(s) 551
BspCNI CTCAG 2 cut(s) 256, 600
BspDI ATCGAT 1 cut(s) 517
BspEI TCCGGA 1 cut(s) 292
BspLI GGNNCC 1 cut(s) 645
BspPI GGATC 4 cut(s) 75, 233, 638, 651
BsrFI RCCGGY 1 cut(s) 425
BssAI RCCGGY 1 cut(s) 425
BssECI CCNNGG 1 cut(s) 65
BssMI GATC 4 cut(s) 80, 238, 445, 643
BssT1I CCWWGG 1 cut(s) 65
Bst4CI ACNGT 2 cut(s) 340, 571
BstAPI GCANNNNNTGC 1 cut(s) 169
BstDEI CTNAG 3 cut(s) 243, 303, 587
BstF5I GGATG 1 cut(s) 18
BstKTI GATC 4 cut(s) 83, 241, 448, 646
BstMBI GATC 4 cut(s) 80, 238, 445, 643
BstMWI GCNNNNNNNGC 3 cut(s) 169, 365, 683
BstNSI RCATGY 1 cut(s) 477
BstSFI CTRYAG 1 cut(s) 339
BstV1I GCAGC 2 cut(s) 371, 487
BstV2I GAAGAC 1 cut(s) 476
BstX2I RGATCY 1 cut(s) 643
BstYI RGATCY 1 cut(s) 643
Bsu15I ATCGAT 1 cut(s) 517
BsuRI GGCC 1 cut(s) 551
BsuTUI ATCGAT 1 cut(s) 517
BtsCI GGATG 1 cut(s) 18
BtsIMutI CAGTG 2 cut(s) 441, 595
Cfr10I RCCGGY 1 cut(s) 425
ClaI ATCGAT 1 cut(s) 517
CviAII CATG 2 cut(s) 155, 474
CviJI RGCY 9 cut(s) 11, 89, 311, 317, 344, 551, 586, 686, 709
CviKI_1 RGCY 9 cut(s) 11, 89, 311, 317, 344, 551, 586, 686, 709
DdeI CTNAG 3 cut(s) 243, 303, 587
DpnI GATC 4 cut(s) 82, 240, 447, 645
DpnII GATC 4 cut(s) 80, 238, 445, 643
DraI TTTAAA 1 cut(s) 391
Ecl136II GAGCTC 1 cut(s) 586
Eco130I CCWWGG 1 cut(s) 65
Eco24I GRGCYC 1 cut(s) 588
Eco53kI GAGCTC 1 cut(s) 586
Eco57I CTGAAG 2 cut(s) 204, 333
Eco88I CYCGRG 1 cut(s) 639
EcoICRI GAGCTC 1 cut(s) 586
EcoT14I CCWWGG 1 cut(s) 65
EcoT38I GRGCYC 1 cut(s) 588
ErhI CCWWGG 1 cut(s) 65
FaeI CATG 2 cut(s) 158, 477
FaiI YATR 8 cut(s) 156, 250, 252, 475, 507, 596, 617, 653
FatI CATG 2 cut(s) 154, 473
FauNDI CATATG 1 cut(s) 250
FblI GTMKAC 1 cut(s) 609
Fnu4HI GCNGC 2 cut(s) 360, 501
FokI GGATG 1 cut(s) 5
FriOI GRGCYC 1 cut(s) 588
Fsp4HI GCNGC 2 cut(s) 360, 501
FspBI CTAG 2 cut(s) 66, 186
GluI GCNGC 2 cut(s) 360, 501
GsaI CCCAGC 1 cut(s) 89
HaeIII GGCC 1 cut(s) 551
HapII CCGG 2 cut(s) 293, 426
Hin1II CATG 2 cut(s) 158, 477
HincII GTYRAC 1 cut(s) 610
HindII GTYRAC 1 cut(s) 610
HinfI GANTC 1 cut(s) 611
HpaII CCGG 2 cut(s) 293, 426
HphI GGTGA 3 cut(s) 110, 440, 487
Hpy166II GTNNAC 2 cut(s) 271, 610
Hpy188I TCNGA 3 cut(s) 58, 223, 454
Hpy188III TCNNGA 5 cut(s) 78, 186, 293, 533, 641
Hpy8I GTNNAC 2 cut(s) 271, 610
HpyAV CCTTC 3 cut(s) 71, 218, 541
HpyCH4III ACNGT 2 cut(s) 340, 571
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 1 cut(s) 359
HpyF10VI GCNNNNNNNGC 3 cut(s) 169, 365, 683
HpyF3I CTNAG 3 cut(s) 243, 303, 587
HpySE526I ACGT 1 cut(s) 321
Hsp92II CATG 2 cut(s) 158, 477
Kpn2I TCCGGA 1 cut(s) 292
Kzo9I GATC 4 cut(s) 80, 238, 445, 643
LmnI GCTCC 3 cut(s) 99, 196, 308
LpnPI CCDG 9 cut(s) 99, 129, 185, 306, 439, 491, 504, 633, 690
Lsp1109I GCAGC 2 cut(s) 371, 487
MaeI CTAG 2 cut(s) 66, 186
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 2 cut(s) 322, 493
MalI GATC 4 cut(s) 82, 240, 447, 645
MboI GATC 4 cut(s) 80, 238, 445, 643
MboII GAAGA 4 cut(s) 122, 443, 446, 481
MfeI CAATTG 1 cut(s) 174
MflI RGATCY 1 cut(s) 643
MhlI GDGCHC 1 cut(s) 588
MluCI AATT 5 cut(s) 47, 174, 482, 528, 633
MlyI GAGTC 1 cut(s) 605
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 5 cut(s) 51, 146, 225, 252, 529
MroI TCCGGA 1 cut(s) 292
MseI TTAA 1 cut(s) 390
MspA1I CMGCKG 2 cut(s) 362, 500
MspI CCGG 2 cut(s) 293, 426
MunI CAATTG 1 cut(s) 174
Mva1269I GAATGC 2 cut(s) 36, 599
MwoI GCNNNNNNNGC 3 cut(s) 169, 365, 683
NdeI CATATG 1 cut(s) 250
NdeII GATC 4 cut(s) 80, 238, 445, 643
NlaIII CATG 2 cut(s) 158, 477
NlaIV GGNNCC 1 cut(s) 645
NmuCI GTSAC 1 cut(s) 493
NspI RCATGY 1 cut(s) 477
PctI GAATGC 2 cut(s) 36, 599
PkrI GCNGC 2 cut(s) 361, 502
PleI GAGTC 1 cut(s) 605
PpsI GAGTC 1 cut(s) 605
Psp124BI GAGCTC 1 cut(s) 588
PspFI CCCAGC 1 cut(s) 85
PspN4I GGNNCC 1 cut(s) 645
PsuI RGATCY 1 cut(s) 643
SacI GAGCTC 1 cut(s) 588
SalI GTCGAC 1 cut(s) 608
SaqAI TTAA 1 cut(s) 390
SatI GCNGC 2 cut(s) 360, 501
Sau3AI GATC 4 cut(s) 80, 238, 445, 643
SchI GAGTC 1 cut(s) 605
SduI GDGCHC 1 cut(s) 588
SetI ASST 8 cut(s) 63, 109, 148, 313, 324, 346, 559, 588
SfcI CTRYAG 1 cut(s) 339
Sse9I AATT 5 cut(s) 47, 174, 482, 528, 633
SsiI CCGC 3 cut(s) 139, 362, 498
SspMI CTAG 2 cut(s) 66, 186
SstI GAGCTC 1 cut(s) 588
StyI CCWWGG 1 cut(s) 65
TaaI ACNGT 2 cut(s) 340, 571
TaiI ACGT 1 cut(s) 324
TaqI TCGA 2 cut(s) 517, 609
TasI AATT 5 cut(s) 47, 174, 482, 528, 633
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TscAI CASTG 2 cut(s) 448, 595
TseFI GTSAC 1 cut(s) 493
TseI GCWGC 2 cut(s) 359, 500
Tsp45I GTSAC 1 cut(s) 493
TspDTI ATGAA 2 cut(s) 63, 640
TspGWI ACGGA 2 cut(s) 4, 209
TspRI CASTG 2 cut(s) 448, 595
XapI RAATTY 2 cut(s) 47, 482
XbaI TCTAGA 1 cut(s) 185
XceI RCATGY 1 cut(s) 477
XcmI CCANNNNNNNNNTGG 1 cut(s) 93
XmaJI CCTAGG 1 cut(s) 65
XmiI GTMKAC 1 cut(s) 609
XspI CTAG 2 cut(s) 66, 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.