MD04G1111300.v1.1

Integral membrane protein TerC family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
19604771 .. 19609206
4436 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1111300.v1.1.491

Sequence Viewer

Length: 1122 bp
ATGGGCACGGCTTCCGTCATCCATAACGGCGTCCACATCCATCTGAAGCTCAATTCCCGCCTGCCTAGGGTTTCGCTCCCATCACCAGCCCCAAATTGGAGTATGCCTCACTTCATTCACCATCACATCGTTCCCATCCGTACAGGCCGCGGCCAATCCGCGCCGATTGCACGTTCTAGAGCAACTGATCAGGATGATGATTTATCCACTTCAGTAGAAAAGAGGGGTGATTCTGCATCACGAGATGGCATTAGTAATGTGGAAACCTCTCACAATGACTCTCCCGATAAAATTAAGGGGCGCGAAGCTTATGCTGCTTCTGTAAGAACTGTAGCCTTGTGGGTGTGTGCTGCGGTGGCATTTGGCATTGGTGTGGGCTTTAAAGACGGAGTTGGCAAGGCATCGGAGTTCTTTGCCGGGTACTTACTGGAGCAAAGCTTGTCAGTAGACAATCTGTTTGTCTTTGTTCTAGTTTTTAAGTACTTCAAAGTGCCAATTATGTATCAGAATCGAGTACTTTCTTATGGTATTGCTGGAGCAGTGGTCTTCCGTTTGACATTAATACTCCTTGGAACAGCCACACTACAGAGGTTTGAGGTGGTAAATCTTTTCCTGGCCGCAATACTCCTTTACTCATCTTTCAAGCTATTTTCCAGCGAAGAAGATGACACTGATCTATCCAACAATTTTATTGTGAAGACATGCCAGAGATTTATCCCTGTCACGTCTAATTATGATGGCAATCGATTTTTTACATTTCAAGATGGTGTCCGGAAGGCCACACCTTTACTTCTCACGGTAGCAGTTATTGAGCTCAGTGACATAGCATTCGCTGTCGACTCTATACCAGCAGTTTTTGGCGTTACTCGGGATCCATTCATAGTTTTCAGTTCTAATCTTTTTGCCATCGTAGGTTTAAGGTCGCTTTACACACTCATTTCTGCGGGTATGTCAGACTTGGAGTATTTGCAGCCATCAATTGCTGTTGTTCTGGGCTTTATCGGGTGTAAGATGATCCTGGATTTTTTTGGGTTTCACGTATCAACCGAGGTGTCTCTTGGCTTTGTAGCTACAAGTCTTAGTGCCGGGGTGCTGTTAAGTCTAATGAAGAAGTCAGACTAG

Protein Analysis

374

Amino Acids

40.71

Weight (kDa)

7.13

Isoelectric Point (pI)

36.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TerC PF03741 138 - 341 1e-48 Integral membrane protein TerC family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 447, 837
AccII CGCG 3 cut(s) 150, 161, 303
AccIII TCCGGA 1 cut(s) 771
AciI CCGC 7 cut(s) 58, 148, 150, 159, 353, 618, 944
AclWI GGATC 3 cut(s) 866, 879, 1009
AcoI YGGCCR 2 cut(s) 151, 615
AcuI CTGAAG 2 cut(s) 65, 195
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 4 cut(s) 142, 422, 482, 516
AfiI CCNNNNNNNGG 2 cut(s) 67, 96
AgsI TTSAA 3 cut(s) 487, 643, 761
AjiI CACGTC 1 cut(s) 726
AjnI CCWGG 2 cut(s) 612, 1017
AluBI AGCT 6 cut(s) 49, 308, 438, 646, 814, 1070
AluI AGCT 6 cut(s) 49, 308, 438, 646, 814, 1070
Alw21I GWGCWC 1 cut(s) 816
Alw26I GTCTC 1 cut(s) 1059
AlwI GGATC 3 cut(s) 866, 879, 1009
Ama87I CYCGRG 1 cut(s) 867
Aor13HI TCCGGA 1 cut(s) 771
AoxI GGCC 4 cut(s) 145, 151, 615, 777
ApeKI GCWGC 3 cut(s) 314, 350, 970
ArsI GACNNNNNNTTYG 4 cut(s) 440, 472, 812, 844
AseI ATTAAT 1 cut(s) 560
AspA2I CCTAGG 1 cut(s) 65
AspLEI GCGC 2 cut(s) 163, 303
AsuC2I CCSGG 2 cut(s) 418, 1087
AsuHPI GGTGA 3 cut(s) 75, 110, 239
AvaI CYCGRG 1 cut(s) 867
AvrII CCTAGG 1 cut(s) 65
BaeGI GKGCMC 1 cut(s) 8
BamHI GGATCC 1 cut(s) 871
BanII GRGCYC 1 cut(s) 816
BauI CACGAG 1 cut(s) 240
BbsI GAAGAC 2 cut(s) 538, 704
Bbv12I GWGCWC 1 cut(s) 816
BbvI GCAGC 3 cut(s) 301, 337, 982
BccI CCATC 9 cut(s) 48, 88, 129, 143, 239, 731, 758, 914, 982
BceAI ACGGC 2 cut(s) 24, 43
BcgI CGANNNNNNTGC 2 cut(s) 293, 327
BciT130I CCWGG 2 cut(s) 614, 1019
BclI TGATCA 1 cut(s) 187
BcnI CCSGG 2 cut(s) 418, 1087
BcoDI GTCTC 1 cut(s) 1059
BfaI CTAG 4 cut(s) 66, 177, 470, 1120
BfmI CTRYAG 2 cut(s) 330, 584
BisI GCNGC 6 cut(s) 148, 151, 315, 351, 618, 971
BlnI CCTAGG 1 cut(s) 65
BlsI GCNGC 6 cut(s) 149, 152, 316, 352, 619, 972
BmcAI AGTACT 2 cut(s) 482, 516
Bme1390I CCNGG 4 cut(s) 418, 614, 1019, 1087
BmeT110I CYCGRG 1 cut(s) 867
BmgBI CACGTC 1 cut(s) 726
BmiI GGNNCC 1 cut(s) 873
BmrFI CCNGG 4 cut(s) 418, 614, 1019, 1087
BmsI GCATC 2 cut(s) 245, 410
BpiI GAAGAC 2 cut(s) 538, 704
BplI GAGNNNNNCTC 2 cut(s) 91, 123
BpmI CTGGAG 2 cut(s) 449, 555
BpuMI CCSGG 2 cut(s) 418, 1087
Bsa29I ATCGAT 1 cut(s) 745
BsaAI YACGTR 1 cut(s) 1039
BsaBI GATNNNNATC 1 cut(s) 741
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 5 cut(s) 65, 148, 568, 1047, 1086
BsaWI WCCGGW 1 cut(s) 771
BsaXI ACNNNNNCTCC 2 cut(s) 528, 558
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 96
Bse1I ACTGG 1 cut(s) 432
Bse8I GATNNNNATC 1 cut(s) 741
BseAI TCCGGA 1 cut(s) 771
BseBI CCWGG 2 cut(s) 614, 1019
BseCI ATCGAT 1 cut(s) 745
BseDI CCNNGG 5 cut(s) 65, 148, 568, 1047, 1086
BseGI GGATG 4 cut(s) 18, 36, 135, 199
BseJI GATNNNNATC 1 cut(s) 741
BseLI CCNNNNNNNGG 2 cut(s) 67, 96
BseMII CTCAG 1 cut(s) 829
BseNI ACTGG 1 cut(s) 432
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 3 cut(s) 301, 337, 982
Bsh1236I CGCG 3 cut(s) 150, 161, 303
BshFI GGCC 4 cut(s) 147, 153, 617, 779
BshVI ATCGAT 1 cut(s) 745
BsiHKAI GWGCWC 1 cut(s) 816
BsiHKCI CYCGRG 1 cut(s) 867
BsiSI CCGG 3 cut(s) 417, 772, 1086
BslI CCNNNNNNNGG 2 cut(s) 67, 96
BsmAI GTCTC 1 cut(s) 1059
BsmI GAATGC 1 cut(s) 827
BsnI GGCC 4 cut(s) 147, 153, 617, 779
BsoBI CYCGRG 1 cut(s) 867
Bsp1286I GDGCHC 2 cut(s) 8, 816
Bsp13I TCCGGA 1 cut(s) 771
Bsp143I GATC 4 cut(s) 187, 673, 871, 1014
BspACI CCGC 7 cut(s) 58, 148, 150, 159, 353, 618, 944
BspANI GGCC 4 cut(s) 147, 153, 617, 779
BspCNI CTCAG 1 cut(s) 828
BspDI ATCGAT 1 cut(s) 745
BspEI TCCGGA 1 cut(s) 771
BspFNI CGCG 3 cut(s) 150, 161, 303
BspLI GGNNCC 1 cut(s) 873
BspPI GGATC 3 cut(s) 866, 879, 1009
BsrI ACTGG 1 cut(s) 432
BssECI CCNNGG 5 cut(s) 65, 148, 568, 1047, 1086
BssMI GATC 4 cut(s) 187, 673, 871, 1014
BssNI GRCGYC 1 cut(s) 30
BssSI CACGAG 1 cut(s) 240
BssT1I CCWWGG 2 cut(s) 65, 568
Bst2BI CACGAG 1 cut(s) 240
Bst2UI CCWGG 2 cut(s) 614, 1019
Bst4CI ACNGT 2 cut(s) 331, 799
BstACI GRCGYC 1 cut(s) 30
BstBAI YACGTR 1 cut(s) 1039
BstC8I GCNNGC 1 cut(s) 62
BstDEI CTNAG 2 cut(s) 815, 1079
BstDSI CCRYGG 1 cut(s) 148
BstF5I GGATG 4 cut(s) 18, 36, 135, 199
BstFNI CGCG 3 cut(s) 150, 161, 303
BstHHI GCGC 2 cut(s) 163, 303
BstKTI GATC 4 cut(s) 190, 676, 874, 1017
BstMAI GTCTC 1 cut(s) 1059
BstMBI GATC 4 cut(s) 187, 673, 871, 1014
BstMWI GCNNNNNNNGC 3 cut(s) 167, 314, 356
BstNI CCWGG 2 cut(s) 614, 1019
BstNSI RCATGY 1 cut(s) 705
BstSCI CCNGG 4 cut(s) 416, 612, 1017, 1085
BstSFI CTRYAG 2 cut(s) 330, 584
BstSLI GKGCMC 1 cut(s) 8
BstUI CGCG 3 cut(s) 150, 161, 303
BstV1I GCAGC 3 cut(s) 301, 337, 982
BstV2I GAAGAC 2 cut(s) 538, 704
BstX2I RGATCY 1 cut(s) 871
BstYI RGATCY 1 cut(s) 871
Bsu15I ATCGAT 1 cut(s) 745
BsuRI GGCC 4 cut(s) 147, 153, 617, 779
BsuTUI ATCGAT 1 cut(s) 745
BtgI CCRYGG 1 cut(s) 148
BtrI CACGTC 1 cut(s) 726
BtsCI GGATG 4 cut(s) 18, 36, 135, 199
BtsI GCAGTG 1 cut(s) 546
BtsIMutI CAGTG 3 cut(s) 546, 669, 823
Cac8I GCNNGC 1 cut(s) 62
CfoI GCGC 2 cut(s) 163, 303
Cfr42I CCGCGG 1 cut(s) 151
ClaI ATCGAT 1 cut(s) 745
CseI GACGC 1 cut(s) 19
Csp6I GTAC 4 cut(s) 141, 421, 481, 515
CviAII CATG 1 cut(s) 702
CviQI GTAC 4 cut(s) 141, 421, 481, 515
DdeI CTNAG 2 cut(s) 815, 1079
DpnI GATC 4 cut(s) 189, 675, 873, 1016
DpnII GATC 4 cut(s) 187, 673, 871, 1014
DraI TTTAAA 1 cut(s) 382
EaeI YGGCCR 2 cut(s) 151, 615
Ecl136II GAGCTC 1 cut(s) 814
Eco130I CCWWGG 2 cut(s) 65, 568
Eco24I GRGCYC 1 cut(s) 816
Eco53kI GAGCTC 1 cut(s) 814
Eco57I CTGAAG 2 cut(s) 65, 195
Eco88I CYCGRG 1 cut(s) 867
EcoICRI GAGCTC 1 cut(s) 814
EcoRII CCWGG 2 cut(s) 612, 1017
EcoT14I CCWWGG 2 cut(s) 65, 568
EcoT38I GRGCYC 1 cut(s) 816
ErhI CCWWGG 2 cut(s) 65, 568
FaeI CATG 1 cut(s) 705
FatI CATG 1 cut(s) 701
FauI CCCGC 2 cut(s) 65, 937
FbaI TGATCA 1 cut(s) 187
FblI GTMKAC 2 cut(s) 447, 837
Fnu4HI GCNGC 6 cut(s) 148, 151, 315, 351, 618, 971
FokI GGATG 4 cut(s) 5, 23, 122, 206
FriOI GRGCYC 1 cut(s) 816
Fsp4HI GCNGC 6 cut(s) 148, 151, 315, 351, 618, 971
FspBI CTAG 4 cut(s) 66, 177, 470, 1120
GlaI GCGC 2 cut(s) 162, 302
GluI GCNGC 6 cut(s) 148, 151, 315, 351, 618, 971
GsuI CTGGAG 2 cut(s) 449, 555
HaeIII GGCC 4 cut(s) 147, 153, 617, 779
HapII CCGG 3 cut(s) 417, 772, 1086
HgaI GACGC 1 cut(s) 19
HhaI GCGC 2 cut(s) 163, 303
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 1 cut(s) 705
Hin6I GCGC 2 cut(s) 161, 301
HinP1I GCGC 2 cut(s) 161, 301
HincII GTYRAC 1 cut(s) 838
HindII GTYRAC 1 cut(s) 838
HindIII AAGCTT 2 cut(s) 306, 436
HinfI GANTC 4 cut(s) 230, 278, 508, 839
HpaII CCGG 3 cut(s) 417, 772, 1086
HphI GGTGA 3 cut(s) 75, 110, 239
Hpy166II GTNNAC 3 cut(s) 34, 448, 838
Hpy188I TCNGA 5 cut(s) 45, 406, 507, 955, 1117
Hpy188III TCNNGA 7 cut(s) 177, 191, 240, 284, 761, 772, 869
Hpy8I GTNNAC 3 cut(s) 34, 448, 838
HpyAV CCTTC 1 cut(s) 769
HpyCH4III ACNGT 2 cut(s) 331, 799
HpyCH4IV ACGT 3 cut(s) 172, 725, 1038
HpyCH4V TGCA 3 cut(s) 170, 236, 970
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 314, 356
HpyF3I CTNAG 2 cut(s) 815, 1079
HpySE526I ACGT 3 cut(s) 172, 725, 1038
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 1 cut(s) 705
HspAI GCGC 2 cut(s) 161, 301
Kpn2I TCCGGA 1 cut(s) 771
Ksp22I TGATCA 1 cut(s) 187
KspI CCGCGG 1 cut(s) 151
Kzo9I GATC 4 cut(s) 187, 673, 871, 1014
LmnI GCTCC 3 cut(s) 81, 430, 536
Lsp1109I GCAGC 3 cut(s) 301, 337, 982
LweI GCATC 2 cut(s) 245, 410
MaeI CTAG 4 cut(s) 66, 177, 470, 1120
MaeII ACGT 3 cut(s) 172, 725, 1038
MaeIII GTNAC 3 cut(s) 721, 818, 862
MalI GATC 4 cut(s) 189, 675, 873, 1016
MboI GATC 4 cut(s) 187, 673, 871, 1014
MboII GAAGA 5 cut(s) 538, 671, 674, 709, 1120
MfeI CAATTG 1 cut(s) 978
MflI RGATCY 1 cut(s) 871
MhlI GDGCHC 2 cut(s) 8, 816
MluCI AATT 7 cut(s) 52, 94, 291, 495, 685, 730, 978
MlyI GAGTC 2 cut(s) 272, 833
MmeI TCCRAC 1 cut(s) 705
MnlI CCTC 6 cut(s) 117, 216, 277, 582, 589, 1042
MroI TCCGGA 1 cut(s) 771
MseI TTAA 6 cut(s) 294, 381, 477, 560, 917, 1097
MslI CAYNNNNRTG 1 cut(s) 371
MspA1I CMGCKG 1 cut(s) 150
MspI CCGG 3 cut(s) 417, 772, 1086
MspR9I CCNGG 4 cut(s) 418, 614, 1019, 1087
MunI CAATTG 1 cut(s) 978
Mva1269I GAATGC 1 cut(s) 827
MvaI CCWGG 2 cut(s) 614, 1019
MvnI CGCG 3 cut(s) 150, 161, 303
MwoI GCNNNNNNNGC 3 cut(s) 167, 314, 356
NciI CCSGG 2 cut(s) 418, 1087
NdeII GATC 4 cut(s) 187, 673, 871, 1014
NlaIII CATG 1 cut(s) 705
NlaIV GGNNCC 1 cut(s) 873
NmuCI GTSAC 2 cut(s) 721, 818
NspI RCATGY 1 cut(s) 705
PcsI WCGNNNNNNNCGW 1 cut(s) 1044
PctI GAATGC 1 cut(s) 827
PfeI GAWTC 2 cut(s) 230, 508
PfoI TCCNGGA 1 cut(s) 1017
PkrI GCNGC 6 cut(s) 149, 152, 316, 352, 619, 972
PleI GAGTC 2 cut(s) 272, 833
PpsI GAGTC 2 cut(s) 272, 833
Ppu21I YACGTR 1 cut(s) 1039
PshBI ATTAAT 1 cut(s) 560
Psp124BI GAGCTC 1 cut(s) 816
Psp6I CCWGG 2 cut(s) 612, 1017
PspGI CCWGG 2 cut(s) 612, 1017
PspN4I GGNNCC 1 cut(s) 873
PsuI RGATCY 1 cut(s) 871
RsaI GTAC 4 cut(s) 142, 422, 482, 516
RsaNI GTAC 4 cut(s) 141, 421, 481, 515
RseI CAYNNNNRTG 1 cut(s) 371
SacI GAGCTC 1 cut(s) 816
SacII CCGCGG 1 cut(s) 151
SalI GTCGAC 1 cut(s) 836
SaqAI TTAA 6 cut(s) 294, 381, 477, 560, 917, 1097
SatI GCNGC 6 cut(s) 148, 151, 315, 351, 618, 971
Sau3AI GATC 4 cut(s) 187, 673, 871, 1014
ScaI AGTACT 2 cut(s) 482, 516
SchI GAGTC 2 cut(s) 272, 833
ScrFI CCNGG 4 cut(s) 418, 614, 1019, 1087
SduI GDGCHC 2 cut(s) 8, 816
SfaNI GCATC 2 cut(s) 245, 410
SfcI CTRYAG 2 cut(s) 330, 584
Sfr303I CCGCGG 1 cut(s) 151
SgrBI CCGCGG 1 cut(s) 151
SmiMI CAYNNNNRTG 1 cut(s) 371
Sse9I AATT 7 cut(s) 52, 94, 291, 495, 685, 730, 978
SsiI CCGC 7 cut(s) 58, 148, 150, 159, 353, 618, 944
SspMI CTAG 4 cut(s) 66, 177, 470, 1120
SstI GAGCTC 1 cut(s) 816
StyD4I CCNGG 4 cut(s) 416, 612, 1017, 1085
StyI CCWWGG 2 cut(s) 65, 568
TaaI ACNGT 2 cut(s) 331, 799
TaiI ACGT 3 cut(s) 175, 728, 1041
TaqI TCGA 3 cut(s) 511, 745, 837
TasI AATT 7 cut(s) 52, 94, 291, 495, 685, 730, 978
TatI WGTACW 2 cut(s) 480, 514
TauI GCSGC 3 cut(s) 150, 153, 620
TfiI GAWTC 2 cut(s) 230, 508
Tru1I TTAA 6 cut(s) 294, 381, 477, 560, 917, 1097
Tru9I TTAA 6 cut(s) 294, 381, 477, 560, 917, 1097
TscAI CASTG 3 cut(s) 546, 676, 823
TseFI GTSAC 2 cut(s) 721, 818
TseI GCWGC 3 cut(s) 314, 350, 970
Tsp45I GTSAC 2 cut(s) 721, 818
TspDTI ATGAA 3 cut(s) 103, 868, 1121
TspGWI ACGGA 4 cut(s) 4, 128, 402, 539
TspRI CASTG 3 cut(s) 546, 676, 823
VspI ATTAAT 1 cut(s) 560
XbaI TCTAGA 1 cut(s) 176
XceI RCATGY 1 cut(s) 705
XcmI CCANNNNNNNNNTGG 1 cut(s) 93
XmaJI CCTAGG 1 cut(s) 65
XmiI GTMKAC 2 cut(s) 447, 837
XspI CTAG 4 cut(s) 66, 177, 470, 1120
ZrmI AGTACT 2 cut(s) 482, 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.