Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002679

Physical Location & Seq

Genomic Coordinates Forward (+)

14011653 .. 14015141

Gene Structure 3489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG163000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGGCGTGGCTTCCGTCATCCACAACGGCGTTCGCATTCCTCTCAAATTCAACTCCGACCTTCCTAGGGTTTCATCGCGATCCCCAGCCCCAAAATGGAGCAGACCTCACTCCATTCACCATCTTGTTCTTCGCCTCCGCACAGGTGGTGGTCGTGGTCGACAGTCTGTGCCAATCGTGTGTTCTAGAGCAACTGAGCAGGACGATGATGTATTTACTTCAGAAGGCGAGAGGATTGATCCTCAGTCATATGATGGCATTAGTAATGTGGACACTTCTCACACTTCCACTCCGGATAAATCTAAGGGAGCTGAAGCTTATGTTACTTCTGTAAGAACTGTAGCTTTTTGGGTGTGTGCAGCGGTAGCATTTGGAGTTGGTGTGGGTTTTAAAGACGGTGTTGGCAAGGCAACCGAGTTTTTTGCCGGGTATTTACTGGAGCAAAGTTTGTCAGTGGATAACTTGTTTGTGTTTGTTCTGATTTTCAAGTACTTCAAAGTGCCACTTATGTATCAGGGTCGTGTTCTTTCATATGGTATTGCTGGTGCAATCATCTTTCGGTTGACATTAATACTACTCGGAACAGTCACACTCCAGAGGTTTGAGGCAGTAAATCTTTTCCTCGCTGCAATACTACTTTACTCATCCTTCAAGTTATTTTCCAGTGAAGAAGATGACACTGATCTATCTGACAACTTTGTTGTGAAGACATGCCAGAAATTTATCCCTGTCACCGCTGCTTATGATGGCAATCGATTTTTTACAATTCAAGAGGGTGTGTGGAAGGCCACACCTTTACTTCTCACGGTAGCAGTTATTGAGCTCAGTGATATAGCATTCGCTGTCGACTCTATACCAGCAGTTTTTGGAATTACTCGGGATCCTTTCATAGTTTTCACTTCTAATCTATTTGCCATCGTAGGTTTAAGGTCGCTTTACACACTCATTTCTGAGGGTATGGCAGACTTGGAGTATTTACAGCCATCAATCGGTGTTGTTCTGGGCTTTATTGGGTGTAAAATGATCCTGGATTTTTTTGGGTTCCACATATCAACAGAGGTGTCTCTCGGTTTTGTAGCTACAAGTCTTAGCACTGGGGTGCTATTAAGTCTAATGAAGAAATCTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009791 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0055035 GO:0061024 GO:0071840 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TerC

Protein Analysis

376

Amino Acids

41.08

Weight (kDa)

6.1

Isoelectric Point (pI)

33.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TerC	PF03741	141 - 344	9.8e-48	Integral membrane protein TerC family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12130 AT5G12130
fragaria_vesca	FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940
malus_domestica	MD04G1111300.v1.1 MD12G1129500.v1.1
prunus_persica	Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1
pyrus_communis	pycom04g10350
rosa_chinensis	RchiOBHm_Chr2g0168111 RchiOBHm_Chr3g0468141
rosa_laevigata	RLG00000024445
rosa_multiflora	Rmu_sc0003659.1_g000009 Rmu_sc0005191.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412990
rosa_rugosa	Rorug03G0093600 Rorug03G0093700
rosa_samantha	Rh3AG141500 Rh3AG215500 Rh3BG163000 Rh3DG163500 Rh5BG496900 Rh6AG253800 Rh6BG009600
rosa_wichuraiana	Rw0G015560 Rw3G013370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	160, 846
AccII	CGCG	1 cut(s)	79
AccIII	TCCGGA	1 cut(s)	292
AciI	CCGC	3 cut(s)	139, 362, 735
AclWI	GGATC	5 cut(s)	75, 233, 875, 888, 1018
AcsI	RAATTY	2 cut(s)	47, 719
AcuI	CTGAAG	2 cut(s)	204, 333
AfaI	GTAC	1 cut(s)	491
AfiI	CCNNNNNNNGG	3 cut(s)	67, 96, 989
AgsI	TTSAA	5 cut(s)	52, 487, 496, 652, 770
AjnI	CCWGG	1 cut(s)	1026
AjuI	GAANNNNNNNTTGG	2 cut(s)	166, 198
AleI	CACNNNNGTG	1 cut(s)	1097
AluBI	AGCT	5 cut(s)	311, 317, 344, 823, 1079
AluI	AGCT	5 cut(s)	311, 317, 344, 823, 1079
Alw21I	GWGCWC	1 cut(s)	825
Alw26I	GTCTC	1 cut(s)	1068
AlwI	GGATC	5 cut(s)	75, 233, 875, 888, 1018
Ama87I	CYCGRG	1 cut(s)	876
Aor13HI	TCCGGA	1 cut(s)	292
AoxI	GGCC	1 cut(s)	786
ApeKI	GCWGC	3 cut(s)	359, 626, 737
ApoI	RAATTY	2 cut(s)	47, 719
AseI	ATTAAT	1 cut(s)	569
AspA2I	CCTAGG	1 cut(s)	65
AsuC2I	CCSGG	1 cut(s)	427
AsuHPI	GGTGA	2 cut(s)	110, 724
AvaI	CYCGRG	1 cut(s)	876
AvrII	CCTAGG	1 cut(s)	65
BaeI	ACNNNNGTAYC	2 cut(s)	494, 527
BamHI	GGATCC	1 cut(s)	880
BanII	GRGCYC	1 cut(s)	825
BbsI	GAAGAC	1 cut(s)	713
Bbv12I	GWGCWC	1 cut(s)	825
BbvI	GCAGC	3 cut(s)	371, 613, 724
BccI	CCATC	5 cut(s)	129, 248, 740, 923, 991
BceAI	ACGGC	1 cut(s)	43
BcgI	CGANNNNNNTGC	2 cut(s)	404, 438
BciT130I	CCWGG	1 cut(s)	1028
BcnI	CCSGG	1 cut(s)	427
BcoDI	GTCTC	1 cut(s)	1068
BfaI	CTAG	3 cut(s)	66, 186, 1129
BfmI	CTRYAG	1 cut(s)	339
BisI	GCNGC	3 cut(s)	360, 627, 738
BlnI	CCTAGG	1 cut(s)	65
BlsI	GCNGC	3 cut(s)	361, 628, 739
BmcAI	AGTACT	1 cut(s)	491
Bme1390I	CCNGG	2 cut(s)	427, 1028
BmeT110I	CYCGRG	1 cut(s)	876
BmiI	GGNNCC	2 cut(s)	882, 1043
BmrFI	CCNGG	2 cut(s)	427, 1028
BmrI	ACTGGG	1 cut(s)	1104
BmuI	ACTGGG	1 cut(s)	1104
BpiI	GAAGAC	1 cut(s)	713
BplI	GAGNNNNNCTC	2 cut(s)	91, 123
BpmI	CTGGAG	2 cut(s)	458, 578
BpuMI	CCSGG	1 cut(s)	427
Bsa29I	ATCGAT	1 cut(s)	754
BsaBI	GATNNNNATC	1 cut(s)	750
BsaJI	CCNNGG	1 cut(s)	65
BsaWI	WCCGGW	1 cut(s)	292
BsaXI	ACNNNNNCTCC	4 cut(s)	274, 304, 366, 396
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 96, 989
Bse1I	ACTGG	3 cut(s)	441, 663, 1099
Bse8I	GATNNNNATC	1 cut(s)	750
BseAI	TCCGGA	1 cut(s)	292
BseBI	CCWGG	1 cut(s)	1028
BseCI	ATCGAT	1 cut(s)	754
BseDI	CCNNGG	1 cut(s)	65
BseGI	GGATG	2 cut(s)	18, 644
BseJI	GATNNNNATC	1 cut(s)	750
BseLI	CCNNNNNNNGG	3 cut(s)	67, 96, 989
BseMII	CTCAG	4 cut(s)	186, 257, 838, 942
BseNI	ACTGG	3 cut(s)	441, 663, 1099
BseXI	GCAGC	3 cut(s)	371, 613, 724
BseYI	CCCAGC	1 cut(s)	85
BsgI	GTGCAG	1 cut(s)	378
Bsh1236I	CGCG	1 cut(s)	79
BshFI	GGCC	1 cut(s)	788
BshVI	ATCGAT	1 cut(s)	754
BsiHKAI	GWGCWC	1 cut(s)	825
BsiHKCI	CYCGRG	1 cut(s)	876
BsiSI	CCGG	2 cut(s)	293, 426
BslI	CCNNNNNNNGG	3 cut(s)	67, 96, 989
BsmAI	GTCTC	1 cut(s)	1068
BsmI	GAATGC	2 cut(s)	36, 836
BsnI	GGCC	1 cut(s)	788
BsoBI	CYCGRG	1 cut(s)	876
Bsp1286I	GDGCHC	1 cut(s)	825
Bsp13I	TCCGGA	1 cut(s)	292
Bsp143I	GATC	5 cut(s)	80, 238, 682, 880, 1023
Bsp68I	TCGCGA	1 cut(s)	79
BspACI	CCGC	3 cut(s)	139, 362, 735
BspANI	GGCC	1 cut(s)	788
BspCNI	CTCAG	4 cut(s)	187, 256, 837, 943
BspDI	ATCGAT	1 cut(s)	754
BspEI	TCCGGA	1 cut(s)	292
BspFNI	CGCG	1 cut(s)	79
BspLI	GGNNCC	2 cut(s)	882, 1043
BspPI	GGATC	5 cut(s)	75, 233, 875, 888, 1018
BsrI	ACTGG	3 cut(s)	441, 663, 1099
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	5 cut(s)	80, 238, 682, 880, 1023
BssT1I	CCWWGG	1 cut(s)	65
Bst2UI	CCWGG	1 cut(s)	1028
Bst4CI	ACNGT	5 cut(s)	165, 340, 398, 586, 808
BstDEI	CTNAG	6 cut(s)	195, 243, 303, 824, 951, 1088
BstF5I	GGATG	2 cut(s)	18, 644
BstFNI	CGCG	1 cut(s)	79
BstKTI	GATC	5 cut(s)	83, 241, 685, 883, 1026
BstMAI	GTCTC	1 cut(s)	1068
BstMBI	GATC	5 cut(s)	80, 238, 682, 880, 1023
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstNI	CCWGG	1 cut(s)	1028
BstNSI	RCATGY	1 cut(s)	714
BstSCI	CCNGG	2 cut(s)	425, 1026
BstSFI	CTRYAG	1 cut(s)	339
BstUI	CGCG	1 cut(s)	79
BstV1I	GCAGC	3 cut(s)	371, 613, 724
BstV2I	GAAGAC	1 cut(s)	713
BstX2I	RGATCY	1 cut(s)	880
BstYI	RGATCY	1 cut(s)	880
Bsu15I	ATCGAT	1 cut(s)	754
BsuRI	GGCC	1 cut(s)	788
BsuTUI	ATCGAT	1 cut(s)	754
BtgZI	GCGATG	1 cut(s)	60
BtsCI	GGATG	2 cut(s)	18, 644
BtsIMutI	CAGTG	5 cut(s)	459, 670, 678, 832, 1092
BtuMI	TCGCGA	1 cut(s)	79
ClaI	ATCGAT	1 cut(s)	754
Csp6I	GTAC	1 cut(s)	490
CviAII	CATG	1 cut(s)	711
CviQI	GTAC	1 cut(s)	490
DdeI	CTNAG	6 cut(s)	195, 243, 303, 824, 951, 1088
DpnI	GATC	5 cut(s)	82, 240, 684, 882, 1025
DpnII	GATC	5 cut(s)	80, 238, 682, 880, 1023
DraI	TTTAAA	1 cut(s)	391
Ecl136II	GAGCTC	1 cut(s)	823
Eco130I	CCWWGG	1 cut(s)	65
Eco24I	GRGCYC	1 cut(s)	825
Eco53kI	GAGCTC	1 cut(s)	823
Eco57I	CTGAAG	2 cut(s)	204, 333
Eco88I	CYCGRG	1 cut(s)	876
EcoICRI	GAGCTC	1 cut(s)	823
EcoRII	CCWGG	1 cut(s)	1026
EcoT14I	CCWWGG	1 cut(s)	65
EcoT38I	GRGCYC	1 cut(s)	825
ErhI	CCWWGG	1 cut(s)	65
FaeI	CATG	1 cut(s)	714
FalI	AAGNNNNNCTT	2 cut(s)	489, 521
FatI	CATG	1 cut(s)	710
FauNDI	CATATG	2 cut(s)	250, 532
FblI	GTMKAC	2 cut(s)	160, 846
Fnu4HI	GCNGC	3 cut(s)	360, 627, 738
FokI	GGATG	2 cut(s)	5, 631
FriOI	GRGCYC	1 cut(s)	825
Fsp4HI	GCNGC	3 cut(s)	360, 627, 738
FspBI	CTAG	3 cut(s)	66, 186, 1129
GluI	GCNGC	3 cut(s)	360, 627, 738
GsaI	CCCAGC	1 cut(s)	89
GsuI	CTGGAG	2 cut(s)	458, 578
HaeIII	GGCC	1 cut(s)	788
HapII	CCGG	2 cut(s)	293, 426
Hin1II	CATG	1 cut(s)	714
HincII	GTYRAC	3 cut(s)	161, 564, 847
HindII	GTYRAC	3 cut(s)	161, 564, 847
HindIII	AAGCTT	1 cut(s)	315
HinfI	GANTC	1 cut(s)	848
HpaII	CCGG	2 cut(s)	293, 426
HphI	GGTGA	2 cut(s)	110, 724
Hpy166II	GTNNAC	4 cut(s)	161, 271, 564, 847
Hpy188I	TCNGA	7 cut(s)	58, 223, 480, 581, 691, 952, 1126
Hpy188III	TCNNGA	6 cut(s)	78, 186, 293, 595, 770, 878
Hpy8I	GTNNAC	4 cut(s)	161, 271, 564, 847
HpyAV	CCTTC	4 cut(s)	71, 218, 658, 778
HpyCH4III	ACNGT	5 cut(s)	165, 340, 398, 586, 808
HpyCH4V	TGCA	3 cut(s)	359, 548, 629
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	6 cut(s)	195, 243, 303, 824, 951, 1088
Hsp92II	CATG	1 cut(s)	714
Kpn2I	TCCGGA	1 cut(s)	292
Kzo9I	GATC	5 cut(s)	80, 238, 682, 880, 1023
LmnI	GCTCC	3 cut(s)	99, 308, 439
Lsp1109I	GCAGC	3 cut(s)	371, 613, 724
MaeI	CTAG	3 cut(s)	66, 186, 1129
MaeIII	GTNAC	3 cut(s)	322, 586, 730
MalI	GATC	5 cut(s)	82, 240, 684, 882, 1025
MboI	GATC	5 cut(s)	80, 238, 682, 880, 1023
MboII	GAAGA	5 cut(s)	122, 680, 683, 718, 1129
MflI	RGATCY	1 cut(s)	880
MhlI	GDGCHC	1 cut(s)	825
MluCI	AATT	4 cut(s)	47, 719, 765, 870
MlyI	GAGTC	1 cut(s)	842
MmeI	TCCRAC	1 cut(s)	81
MroI	TCCGGA	1 cut(s)	292
MseI	TTAA	4 cut(s)	390, 569, 926, 1106
MslI	CAYNNNNRTG	1 cut(s)	1097
MspA1I	CMGCKG	2 cut(s)	362, 737
MspI	CCGG	2 cut(s)	293, 426
MspR9I	CCNGG	2 cut(s)	427, 1028
Mva1269I	GAATGC	2 cut(s)	36, 836
MvaI	CCWGG	1 cut(s)	1028
MvnI	CGCG	1 cut(s)	79
MwoI	GCNNNNNNNGC	1 cut(s)	365
NciI	CCSGG	1 cut(s)	427
NdeI	CATATG	2 cut(s)	250, 532
NdeII	GATC	5 cut(s)	80, 238, 682, 880, 1023
NlaIII	CATG	1 cut(s)	714
NlaIV	GGNNCC	2 cut(s)	882, 1043
NmuCI	GTSAC	2 cut(s)	586, 730
NruI	TCGCGA	1 cut(s)	79
NspI	RCATGY	1 cut(s)	714
OliI	CACNNNNGTG	1 cut(s)	1097
PctI	GAATGC	2 cut(s)	36, 836
PfoI	TCCNGGA	1 cut(s)	1026
PkrI	GCNGC	3 cut(s)	361, 628, 739
PleI	GAGTC	1 cut(s)	842
PpsI	GAGTC	1 cut(s)	842
PshBI	ATTAAT	1 cut(s)	569
Psp124BI	GAGCTC	1 cut(s)	825
Psp6I	CCWGG	1 cut(s)	1026
PspFI	CCCAGC	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	1026
PspN4I	GGNNCC	2 cut(s)	882, 1043
PsuI	RGATCY	1 cut(s)	880
RruI	TCGCGA	1 cut(s)	79
RsaI	GTAC	1 cut(s)	491
RsaNI	GTAC	1 cut(s)	490
RseI	CAYNNNNRTG	1 cut(s)	1097
SacI	GAGCTC	1 cut(s)	825
SalI	GTCGAC	2 cut(s)	159, 845
SaqAI	TTAA	4 cut(s)	390, 569, 926, 1106
SatI	GCNGC	3 cut(s)	360, 627, 738
Sau3AI	GATC	5 cut(s)	80, 238, 682, 880, 1023
ScaI	AGTACT	1 cut(s)	491
SchI	GAGTC	1 cut(s)	842
ScrFI	CCNGG	2 cut(s)	427, 1028
SduI	GDGCHC	1 cut(s)	825
SfcI	CTRYAG	1 cut(s)	339
SmiMI	CAYNNNNRTG	1 cut(s)	1097
Sse9I	AATT	4 cut(s)	47, 719, 765, 870
SsiI	CCGC	3 cut(s)	139, 362, 735
SspMI	CTAG	3 cut(s)	66, 186, 1129
SstI	GAGCTC	1 cut(s)	825
StyD4I	CCNGG	2 cut(s)	425, 1026
StyI	CCWWGG	1 cut(s)	65
TaaI	ACNGT	5 cut(s)	165, 340, 398, 586, 808
TaqI	TCGA	3 cut(s)	160, 754, 846
TasI	AATT	4 cut(s)	47, 719, 765, 870
TatI	WGTACW	1 cut(s)	489
Tru1I	TTAA	4 cut(s)	390, 569, 926, 1106
Tru9I	TTAA	4 cut(s)	390, 569, 926, 1106
TscAI	CASTG	5 cut(s)	459, 670, 685, 832, 1099
TseFI	GTSAC	2 cut(s)	586, 730
TseI	GCWGC	3 cut(s)	359, 626, 737
Tsp45I	GTSAC	2 cut(s)	586, 730
TspDTI	ATGAA	4 cut(s)	63, 519, 877, 1130
TspGWI	ACGGA	1 cut(s)	4
TspRI	CASTG	5 cut(s)	459, 670, 685, 832, 1099
VspI	ATTAAT	1 cut(s)	569
XapI	RAATTY	2 cut(s)	47, 719
XbaI	TCTAGA	1 cut(s)	185
XceI	RCATGY	1 cut(s)	714
XcmI	CCANNNNNNNNNTGG	1 cut(s)	93
XmaJI	CCTAGG	1 cut(s)	65
XmiI	GTMKAC	2 cut(s)	160, 846
XspI	CTAG	3 cut(s)	66, 186, 1129
ZrmI	AGTACT	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.