Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002679

Physical Location & Seq

Genomic Coordinates Reverse (-)

24226101 .. 24230282

Gene Structure 4182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G244800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGGCATGGCTTCTGTCGTCCACAACGGCGTACACATTCCTCTGAAGCTCAGTTCACGCTTGCCTAGGGTTTCATCACCATCTCCAGCCCCAAAGTGGGCTAGGCCTCACTTATTTCACCTTCATATCCCTCGCATCCGCACAGGTGGTCACAGTCGTCGTGGCCAATCTGCGCCGATTGCACGTTCTAGAACAACTGAGCAAGATGATGATTTATCCACTTCAGAAGGTGAGAGGGTCGATTCTCAGTCACATGATGACATTGGTGATGTGGACACCTCTCACACTTCCTCTCCAGAGAAAACGCAGGGACGTGAAGCTTATGTTTCTTCCGTAAGAACTGTAGCCTTGTGGGTGTGCGCTGCGGTAGCATTTGGTGTCGGTTTGGGTTTCAAAGATGGAGTTGGCAAGGCAACGGAGTTTTTTGCTGGGTATTTGCTGGAGCAAAGCTTATCAGTGGACAATCTGTTTGTCTTTGTTCTGATTTTCAAGTACTTCAAAGTGCCAATCATGTATCAGAATCGGGTGCTTTCATATGGTATTGCTGGTGCAGTCGTCTTTCGTTTCACATTAATACTCCTAGGAACAGCCACACTGCAGAGGTTTGAGGCGGTGAATCTTTTCCTGGCTGCAATACTCCTTTACTCATCCTTCAAGCTATTTACCAGTGAAGACGATGACACTGATCTATCCAACAACTTTGTTGTGAAGACCTGCCAGAGATTTATCCCTGTCACGTCGAGTTATGATGGCAATAAATTTTTCACATTTCAAGATGGCGTGCAAAAGGCCACACCTTTACTTCTCACGGTAGCAGTTATTGAGCTCAGTGATATAGCATTCGCTGTCGACTCCATACCAGCAGTTTTCGGTGTTACTCGGGATCCTTTCATAGTGTTCAGTTCTAATCTTTTTGCCATCGTAGGTTTAAGATCACTTTACACACTCATTTCTGAGGGTATGTCAGACTTGGAGTATTTACAGCCATCAATTGGTGTTGTTCTGGGCTTTATCGGGTGTAAGATGATCCTGGATTATTTTGGGTTCCATGTATCAACGGAGGTGTCTCTTGGCTTTGTAGCTACAAGTCTTAGTACTGGGGTGCTGTTAAGTCTAATGAAGAAGTCTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009791 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0055035 GO:0061024 GO:0071840 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TerC

Protein Analysis

378

Amino Acids

41.26

Weight (kDa)

6.31

Isoelectric Point (pI)

41.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12130 AT5G12130
fragaria_vesca	FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940 FvH4_6g14940
malus_domestica	MD04G1111300.v1.1 MD12G1129500.v1.1
prunus_persica	Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1 Prupe.6G244800_v2.0.a1
pyrus_communis	pycom04g10350
rosa_chinensis	RchiOBHm_Chr2g0168111 RchiOBHm_Chr3g0468141
rosa_laevigata	RLG00000024445
rosa_multiflora	Rmu_sc0003659.1_g000009 Rmu_sc0005191.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412990
rosa_rugosa	Rorug03G0093600 Rorug03G0093700
rosa_samantha	Rh3AG141500 Rh3AG215500 Rh3BG163000 Rh3DG163500 Rh5BG496900 Rh6AG253800 Rh6BG009600
rosa_wichuraiana	Rw0G015560 Rw3G013370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	722
AccB7I	CCANNNNNTGG	1 cut(s)	992
AccI	GTMKAC	1 cut(s)	849
AciI	CCGC	3 cut(s)	139, 365, 611
AclWI	GGATC	3 cut(s)	878, 891, 1021
AcoI	YGGCCR	1 cut(s)	163
AcsI	RAATTY	1 cut(s)	758
AcuI	CTGAAG	2 cut(s)	65, 207
AfaI	GTAC	3 cut(s)	33, 494, 1096
AfiI	CCNNNNNNNGG	3 cut(s)	96, 97, 992
AgsI	TTSAA	5 cut(s)	394, 490, 499, 655, 773
AjiI	CACGTC	2 cut(s)	314, 738
AjnI	CCWGG	2 cut(s)	624, 1029
AluBI	AGCT	6 cut(s)	49, 320, 450, 658, 826, 1082
AluI	AGCT	6 cut(s)	49, 320, 450, 658, 826, 1082
Alw21I	GWGCWC	1 cut(s)	828
Alw26I	GTCTC	1 cut(s)	1071
AlwI	GGATC	3 cut(s)	878, 891, 1021
Ama87I	CYCGRG	1 cut(s)	879
AoxI	GGCC	3 cut(s)	104, 163, 789
ApeKI	GCWGC	2 cut(s)	362, 629
ApoI	RAATTY	1 cut(s)	758
ArsI	GACNNNNNNTTYG	2 cut(s)	452, 484
AseI	ATTAAT	1 cut(s)	572
Asp700I	GAANNNNTTC	1 cut(s)	620
AspA2I	CCTAGG	2 cut(s)	65, 580
AspLEI	GCGC	2 cut(s)	175, 362
AsuHPI	GGTGA	5 cut(s)	69, 110, 242, 278, 625
AvaI	CYCGRG	1 cut(s)	879
AvrII	CCTAGG	2 cut(s)	65, 580
BalI	TGGCCA	1 cut(s)	165
BamHI	GGATCC	1 cut(s)	883
BanII	GRGCYC	1 cut(s)	828
BbsI	GAAGAC	2 cut(s)	678, 716
Bbv12I	GWGCWC	1 cut(s)	828
BbvI	GCAGC	2 cut(s)	349, 616
BccI	CCATC	6 cut(s)	88, 392, 743, 770, 926, 994
BceAI	ACGGC	1 cut(s)	43
BciT130I	CCWGG	2 cut(s)	626, 1031
BcoDI	GTCTC	1 cut(s)	1071
BfaI	CTAG	5 cut(s)	66, 102, 189, 581, 1132
BfmI	CTRYAG	2 cut(s)	342, 596
BfuAI	ACCTGC	1 cut(s)	722
BisI	GCNGC	2 cut(s)	363, 630
BlnI	CCTAGG	2 cut(s)	65, 580
BlsI	GCNGC	2 cut(s)	364, 631
BmcAI	AGTACT	2 cut(s)	494, 1096
Bme1390I	CCNGG	2 cut(s)	626, 1031
BmeT110I	CYCGRG	1 cut(s)	879
BmgBI	CACGTC	2 cut(s)	314, 738
BmiI	GGNNCC	2 cut(s)	885, 1046
BmrFI	CCNGG	2 cut(s)	626, 1031
BmrI	ACTGGG	1 cut(s)	1107
BmsI	GCATC	1 cut(s)	144
BmuI	ACTGGG	1 cut(s)	1107
BpiI	GAAGAC	2 cut(s)	678, 716
BpmI	CTGGAG	3 cut(s)	69, 279, 461
BsaJI	CCNNGG	2 cut(s)	65, 580
BsaXI	ACNNNNNCTCC	2 cut(s)	277, 307
Bsc4I	CCNNNNNNNGG	3 cut(s)	96, 97, 992
Bse1I	ACTGG	2 cut(s)	666, 1102
BseBI	CCWGG	2 cut(s)	626, 1031
BseDI	CCNNGG	2 cut(s)	65, 580
BseGI	GGATG	2 cut(s)	135, 647
BseLI	CCNNNNNNNGG	3 cut(s)	96, 97, 992
BseMII	CTCAG	5 cut(s)	64, 189, 260, 841, 945
BseNI	ACTGG	2 cut(s)	666, 1102
BseXI	GCAGC	2 cut(s)	349, 616
BseYI	CCCAGC	1 cut(s)	428
BsgI	GTGCAG	1 cut(s)	570
BshFI	GGCC	3 cut(s)	106, 165, 791
BsiHKAI	GWGCWC	1 cut(s)	828
BsiHKCI	CYCGRG	1 cut(s)	879
BslFI	GGGAC	1 cut(s)	324
BslI	CCNNNNNNNGG	3 cut(s)	96, 97, 992
BsmAI	GTCTC	1 cut(s)	1071
BsmFI	GGGAC	1 cut(s)	324
BsmI	GAATGC	1 cut(s)	839
BsnI	GGCC	3 cut(s)	106, 165, 791
BsoBI	CYCGRG	1 cut(s)	879
Bsp1286I	GDGCHC	1 cut(s)	828
Bsp143I	GATC	4 cut(s)	685, 883, 932, 1026
BspACI	CCGC	3 cut(s)	139, 365, 611
BspANI	GGCC	3 cut(s)	106, 165, 791
BspCNI	CTCAG	5 cut(s)	63, 190, 259, 840, 946
BspLI	GGNNCC	2 cut(s)	885, 1046
BspMAI	CTGCAG	1 cut(s)	600
BspMI	ACCTGC	1 cut(s)	722
BspPI	GGATC	3 cut(s)	878, 891, 1021
BsrI	ACTGG	2 cut(s)	666, 1102
BssECI	CCNNGG	2 cut(s)	65, 580
BssMI	GATC	4 cut(s)	685, 883, 932, 1026
BssT1I	CCWWGG	2 cut(s)	65, 580
Bst2UI	CCWGG	2 cut(s)	626, 1031
Bst4CI	ACNGT	3 cut(s)	155, 343, 811
BstC8I	GCNNGC	2 cut(s)	62, 782
BstDEI	CTNAG	6 cut(s)	50, 198, 246, 827, 954, 1091
BstF5I	GGATG	2 cut(s)	135, 647
BstHHI	GCGC	2 cut(s)	175, 362
BstKTI	GATC	4 cut(s)	688, 886, 935, 1029
BstMAI	GTCTC	1 cut(s)	1071
BstMBI	GATC	4 cut(s)	685, 883, 932, 1026
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 368
BstNI	CCWGG	2 cut(s)	626, 1031
BstSCI	CCNGG	2 cut(s)	624, 1029
BstSFI	CTRYAG	2 cut(s)	342, 596
BstV1I	GCAGC	2 cut(s)	349, 616
BstV2I	GAAGAC	2 cut(s)	678, 716
BstX2I	RGATCY	1 cut(s)	883
BstYI	RGATCY	1 cut(s)	883
BsuRI	GGCC	3 cut(s)	106, 165, 791
BtrI	CACGTC	2 cut(s)	314, 738
BtsCI	GGATG	2 cut(s)	135, 647
BtsI	GCAGTG	1 cut(s)	593
BtsIMutI	CAGTG	5 cut(s)	462, 593, 673, 681, 835
BveI	ACCTGC	1 cut(s)	722
Cac8I	GCNNGC	2 cut(s)	62, 782
CfoI	GCGC	2 cut(s)	175, 362
Csp6I	GTAC	3 cut(s)	32, 493, 1095
CviAII	CATG	4 cut(s)	7, 254, 511, 1049
CviQI	GTAC	3 cut(s)	32, 493, 1095
DdeI	CTNAG	6 cut(s)	50, 198, 246, 827, 954, 1091
DpnI	GATC	4 cut(s)	687, 885, 934, 1028
DpnII	GATC	4 cut(s)	685, 883, 932, 1026
EaeI	YGGCCR	1 cut(s)	163
Ecl136II	GAGCTC	1 cut(s)	826
Eco130I	CCWWGG	2 cut(s)	65, 580
Eco147I	AGGCCT	1 cut(s)	106
Eco24I	GRGCYC	1 cut(s)	828
Eco53kI	GAGCTC	1 cut(s)	826
Eco57I	CTGAAG	2 cut(s)	65, 207
Eco88I	CYCGRG	1 cut(s)	879
EcoICRI	GAGCTC	1 cut(s)	826
EcoRII	CCWGG	2 cut(s)	624, 1029
EcoT14I	CCWWGG	2 cut(s)	65, 580
EcoT38I	GRGCYC	1 cut(s)	828
ErhI	CCWWGG	2 cut(s)	65, 580
FaeI	CATG	4 cut(s)	10, 257, 514, 1052
FaqI	GGGAC	1 cut(s)	324
FatI	CATG	4 cut(s)	6, 253, 510, 1048
FauNDI	CATATG	1 cut(s)	535
FblI	GTMKAC	1 cut(s)	849
Fnu4HI	GCNGC	2 cut(s)	363, 630
FokI	GGATG	2 cut(s)	122, 634
FriOI	GRGCYC	1 cut(s)	828
Fsp4HI	GCNGC	2 cut(s)	363, 630
FspBI	CTAG	5 cut(s)	66, 102, 189, 581, 1132
GlaI	GCGC	2 cut(s)	174, 361
GluI	GCNGC	2 cut(s)	363, 630
GsaI	CCCAGC	1 cut(s)	432
GsuI	CTGGAG	3 cut(s)	69, 279, 461
HaeIII	GGCC	3 cut(s)	106, 165, 791
HhaI	GCGC	2 cut(s)	175, 362
Hin1II	CATG	4 cut(s)	10, 257, 514, 1052
Hin6I	GCGC	2 cut(s)	173, 360
HinP1I	GCGC	2 cut(s)	173, 360
HincII	GTYRAC	1 cut(s)	850
HindII	GTYRAC	1 cut(s)	850
HindIII	AAGCTT	2 cut(s)	318, 448
HinfI	GANTC	4 cut(s)	242, 520, 616, 851
HphI	GGTGA	5 cut(s)	69, 110, 242, 278, 625
Hpy166II	GTNNAC	6 cut(s)	22, 34, 56, 274, 460, 850
Hpy188I	TCNGA	7 cut(s)	45, 226, 483, 519, 955, 967, 1129
Hpy188III	TCNNGA	4 cut(s)	189, 296, 773, 881
Hpy8I	GTNNAC	6 cut(s)	22, 34, 56, 274, 460, 850
Hpy99I	CGWCG	2 cut(s)	162, 742
HpyAV	CCTTC	3 cut(s)	131, 221, 661
HpyCH4III	ACNGT	3 cut(s)	155, 343, 811
HpyCH4IV	ACGT	3 cut(s)	184, 313, 737
HpyCH4V	TGCA	5 cut(s)	182, 551, 598, 632, 784
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 368
HpyF3I	CTNAG	6 cut(s)	50, 198, 246, 827, 954, 1091
HpySE526I	ACGT	3 cut(s)	184, 313, 737
Hsp92II	CATG	4 cut(s)	10, 257, 514, 1052
HspAI	GCGC	2 cut(s)	173, 360
Kzo9I	GATC	4 cut(s)	685, 883, 932, 1026
LmnI	GCTCC	1 cut(s)	442
Lsp1109I	GCAGC	2 cut(s)	349, 616
LweI	GCATC	1 cut(s)	144
MaeI	CTAG	5 cut(s)	66, 102, 189, 581, 1132
MaeII	ACGT	3 cut(s)	184, 313, 737
MaeIII	GTNAC	4 cut(s)	149, 249, 733, 874
MalI	GATC	4 cut(s)	687, 885, 934, 1028
MboI	GATC	4 cut(s)	685, 883, 932, 1026
MboII	GAAGA	4 cut(s)	321, 683, 721, 1132
MfeI	CAATTG	1 cut(s)	990
MflI	RGATCY	1 cut(s)	883
MhlI	GDGCHC	1 cut(s)	828
MlsI	TGGCCA	1 cut(s)	165
MluCI	AATT	2 cut(s)	758, 990
MluNI	TGGCCA	1 cut(s)	165
MlyI	GAGTC	1 cut(s)	845
MmeI	TCCRAC	1 cut(s)	717
Mox20I	TGGCCA	1 cut(s)	165
MroXI	GAANNNNTTC	1 cut(s)	620
MscI	TGGCCA	1 cut(s)	165
MseI	TTAA	3 cut(s)	572, 929, 1109
Msp20I	TGGCCA	1 cut(s)	165
MspR9I	CCNGG	2 cut(s)	626, 1031
MunI	CAATTG	1 cut(s)	990
Mva1269I	GAATGC	1 cut(s)	839
MvaI	CCWGG	2 cut(s)	626, 1031
MwoI	GCNNNNNNNGC	2 cut(s)	179, 368
NdeI	CATATG	1 cut(s)	535
NdeII	GATC	4 cut(s)	685, 883, 932, 1026
NlaIII	CATG	4 cut(s)	10, 257, 514, 1052
NlaIV	GGNNCC	2 cut(s)	885, 1046
NmuCI	GTSAC	3 cut(s)	149, 249, 733
PceI	AGGCCT	1 cut(s)	106
PctI	GAATGC	1 cut(s)	839
PdmI	GAANNNNTTC	1 cut(s)	620
PfeI	GAWTC	3 cut(s)	242, 520, 616
PflMI	CCANNNNNTGG	1 cut(s)	992
PfoI	TCCNGGA	1 cut(s)	1029
PkrI	GCNGC	2 cut(s)	364, 631
PleI	GAGTC	1 cut(s)	845
PpsI	GAGTC	1 cut(s)	845
PshBI	ATTAAT	1 cut(s)	572
Psp124BI	GAGCTC	1 cut(s)	828
Psp6I	CCWGG	2 cut(s)	624, 1029
PspFI	CCCAGC	1 cut(s)	428
PspGI	CCWGG	2 cut(s)	624, 1029
PspN4I	GGNNCC	2 cut(s)	885, 1046
PstI	CTGCAG	1 cut(s)	600
PsuI	RGATCY	1 cut(s)	883
RsaI	GTAC	3 cut(s)	33, 494, 1096
RsaNI	GTAC	3 cut(s)	32, 493, 1095
SacI	GAGCTC	1 cut(s)	828
SalI	GTCGAC	1 cut(s)	848
SaqAI	TTAA	3 cut(s)	572, 929, 1109
SatI	GCNGC	2 cut(s)	363, 630
Sau3AI	GATC	4 cut(s)	685, 883, 932, 1026
ScaI	AGTACT	2 cut(s)	494, 1096
SchI	GAGTC	1 cut(s)	845
ScrFI	CCNGG	2 cut(s)	626, 1031
SduI	GDGCHC	1 cut(s)	828
SfaNI	GCATC	1 cut(s)	144
SfcI	CTRYAG	2 cut(s)	342, 596
Sse9I	AATT	2 cut(s)	758, 990
SseBI	AGGCCT	1 cut(s)	106
SsiI	CCGC	3 cut(s)	139, 365, 611
SspMI	CTAG	5 cut(s)	66, 102, 189, 581, 1132
SstI	GAGCTC	1 cut(s)	828
StuI	AGGCCT	1 cut(s)	106
StyD4I	CCNGG	2 cut(s)	624, 1029
StyI	CCWWGG	2 cut(s)	65, 580
TaaI	ACNGT	3 cut(s)	155, 343, 811
TaiI	ACGT	3 cut(s)	187, 316, 740
TaqI	TCGA	3 cut(s)	240, 740, 849
TasI	AATT	2 cut(s)	758, 990
TatI	WGTACW	2 cut(s)	492, 1094
TfiI	GAWTC	3 cut(s)	242, 520, 616
Tru1I	TTAA	3 cut(s)	572, 929, 1109
Tru9I	TTAA	3 cut(s)	572, 929, 1109
TscAI	CASTG	5 cut(s)	462, 600, 673, 688, 835
TseFI	GTSAC	3 cut(s)	149, 249, 733
TseI	GCWGC	2 cut(s)	362, 629
Tsp45I	GTSAC	3 cut(s)	149, 249, 733
TspDTI	ATGAA	5 cut(s)	63, 113, 522, 880, 1133
TspGWI	ACGGA	3 cut(s)	322, 431, 1073
TspRI	CASTG	5 cut(s)	462, 600, 673, 688, 835
Van91I	CCANNNNNTGG	1 cut(s)	992
VspI	ATTAAT	1 cut(s)	572
XapI	RAATTY	1 cut(s)	758
XbaI	TCTAGA	1 cut(s)	188
XcmI	CCANNNNNNNNNTGG	1 cut(s)	93
XmaJI	CCTAGG	2 cut(s)	65, 580
XmiI	GTMKAC	1 cut(s)	849
XmnI	GAANNNNTTC	1 cut(s)	620
XspI	CTAG	5 cut(s)	66, 102, 189, 581, 1132
ZrmI	AGTACT	2 cut(s)	494, 1096

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.