Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005378

Physical Location & Seq

Genomic Coordinates Forward (+)

4043057 .. 4044583

Gene Structure 1527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G12460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGACCCATAACCTTTTTGCGCCTCTTGACCTTAGTTTCTCCTCCTCTTCATCTTCCTCCTCCTCGTCAGTATCATTGTCCTTGCAAATAACAAGAGAGCCTCCAACAAATATCAGCCATCTATTTTTTGTCATTGTTGGTAGTACAAAGACTTGGAGATATAGGAGAGGCTACATAGAGCCTTGGTGGAGACCAAACATTACAAAAGGATATGTCTTCCTCGAAAGACCACCTGGCCCTGATCTCTTGCCTTGGCCTCAACAATCTCCTCCCTTCTCTGTCAACAAAGAGTCATTCATCACAAACAAATTCAAGACTCAGATCCGCCTTTTTTATTCGCTTCAAGAGTCTTTTAAGAAGGCGTCCAAAGAGACAAGATGGTTTGTGATAGGAGATGATGATACTCTCTTCTTCTTGGACAATTTGGTGAAAGCTCTCGACCGATATAACCACAAGAAGCACTATTACGTCGGAATGAACTCCGAAAACGTTTGGTCCAACGCGATTTTCGCTTTTGACATGGGATATGGAGGCGGCGGATACGCATTGAGCTATCCAACCGTAGTAACACTTCTCAGCAACATGGAAGAATGTATCAAAAGATACCTTGGAGTTTACAGCGATCTTCTCTCATTTCGTTGCTTGGCCGACTTGGGAATTGATCTTACTTTAGAGAAAGGCATGCACCAGAATGATCTACACGGTGACATATCAGGTCTGTTATCAGCTCATCCTCAGTCTCCTCTTATCAGCCTCCACCATTTCGATGTAATAGACCCGATATTCCCAGGCATGAACCGCCAGCAATCCGTGAACCACCTCATGGAAACCGCGAAAACCGACCAGTCCCGTGTCTTGCAACAAACAATATGTTACCAAAGAGGATATAACTGGTCAGTCTCTGTCTCTTGGGGCTACTCAGTCCACATTTACCAATCTATATACCCAAGAAGCCACCTGAAACGCCCTCTCGAAACATTCCGACCATGGAAGGATGTTAGAATACCGGCGTATGGATTTAACACTAGACGGGTGACGAATGATCCTTGCGAAATGCCTCGTCAGTTTTTCTTTGATTCAGTTGTGGAAGACAAGAACCAAAGCTTGGTAACTACCATCTACAAGATGAAAATGGAAAGGCGTTTGCCTCCTTGTTTGCTAAATGGCAACCATTCTTCTCGTAACATTACACAAGTCCGAGTCATTGCTACTACTATGCACAAGATGGTTGAGGGAATCGAATGTTGCGATGTGCAAAATGTTAACAGTACGGAGATTTTGGAAGTGAAGATAAGAGATTGTCATATAGATGAAGCTCTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF604

Protein Analysis

441

Amino Acids

50.86

Weight (kDa)

8.49

Isoelectric Point (pI)

60.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fringe	PF02434	119 - 231	5.3e-10	Fringe-like
DUF604	PF04646	167 - 409	3.7e-89	Protein of unknown function, DUF604

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12460
fragaria_vesca	FvH4_1g09900 FvH4_3g28523 FvH4_3g28524
malus_domestica	MD03G1172600.v1.1
prunus_persica	Prupe.4G254000_v2.0.a1 Prupe.4G260000_v2.0.a1
pyrus_communis	pycom03g12980
rosa_chinensis	RchiOBHm_Chr5g0052781 RchiOBHm_Chr5g0052791
rosa_laevigata	RLG00000034797 RLG00000034799
rosa_multiflora	Rmu_sc0004335.1_g000002 Rmu_sc0004335.1_g000005 Rmu_sc0010119.1_g000002 Rmu_sc0017126.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028590 Rroxscaffold_1G00028610
rosa_rugosa	Rorug05G0269900
rosa_samantha	Rh5AG341800 Rh5AG341900 Rh5BG352400 Rh5BG352500 Rh5CG379100 Rh5CG379200 Rh5DG368800 Rh5DG368900
rosa_wichuraiana	Rw5G032220 Rw5G032230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	823, 1105
AccII	CGCG	2 cut(s)	503, 833
AciI	CCGC	5 cut(s)	325, 534, 537, 799, 831
AclI	AACGTT	1 cut(s)	489
AclWI	GGATC	2 cut(s)	316, 1037
AcoI	YGGCCR	1 cut(s)	645
AcsI	RAATTY	1 cut(s)	308
AcyI	GRCGYC	1 cut(s)	362
AfaI	GTAC	2 cut(s)	145, 1270
AfiI	CCNNNNNNNGG	3 cut(s)	823, 1013, 1105
AgsI	TTSAA	2 cut(s)	313, 344
AjnI	CCWGG	2 cut(s)	232, 787
AjuI	GAANNNNNNNTTGG	4 cut(s)	491, 523, 1088, 1120
AluBI	AGCT	5 cut(s)	434, 552, 728, 1104, 1316
AluI	AGCT	5 cut(s)	434, 552, 728, 1104, 1316
Alw26I	GTCTC	5 cut(s)	184, 365, 744, 904, 910
AlwI	GGATC	2 cut(s)	316, 1037
AlwNI	CAGNNNCTG	1 cut(s)	902
AoxI	GGCC	3 cut(s)	235, 254, 645
ApoI	RAATTY	1 cut(s)	308
AspLEI	GCGC	1 cut(s)	22
AspS9I	GGNCC	2 cut(s)	236, 495
AsuHPI	GGTGA	3 cut(s)	439, 716, 1045
AvaII	GGWCC	1 cut(s)	495
BarI	GAAGNNNNNNTAC	4 cut(s)	449, 481, 555, 587
BbsI	GAAGAC	2 cut(s)	208, 1095
BccI	CCATC	4 cut(s)	126, 372, 1124, 1219
BciT130I	CCWGG	2 cut(s)	234, 789
BciVI	GTATCC	1 cut(s)	533
BcoDI	GTCTC	5 cut(s)	184, 365, 744, 904, 910
BfaI	CTAG	1 cut(s)	1026
BfuI	GTATCC	1 cut(s)	533
BisI	GCNGC	1 cut(s)	535
BlsI	GCNGC	1 cut(s)	536
Bme1390I	CCNGG	2 cut(s)	234, 789
Bme18I	GGWCC	1 cut(s)	495
BmgT120I	GGNCC	2 cut(s)	236, 495
BmrFI	CCNGG	2 cut(s)	234, 789
BpiI	GAAGAC	2 cut(s)	208, 1095
BsaHI	GRCGYC	1 cut(s)	362
BsaI	GGTCTC	1 cut(s)	184
BsaJI	CCNNGG	5 cut(s)	182, 251, 607, 787, 986
Bsc4I	CCNNNNNNNGG	3 cut(s)	823, 1013, 1105
Bse118I	RCCGGY	1 cut(s)	1006
Bse1I	ACTGG	2 cut(s)	844, 896
Bse3DI	GCAATG	1 cut(s)	1203
BseBI	CCWGG	2 cut(s)	234, 789
BseDI	CCNNGG	5 cut(s)	182, 251, 607, 787, 986
BseGI	GGATG	2 cut(s)	730, 1000
BseLI	CCNNNNNNNGG	3 cut(s)	823, 1013, 1105
BseMI	GCAATG	1 cut(s)	1203
BseMII	CTCAG	4 cut(s)	332, 589, 749, 933
BseNI	ACTGG	2 cut(s)	844, 896
BseRI	GAGGAG	6 cut(s)	31, 34, 49, 52, 258, 732
Bsh1236I	CGCG	2 cut(s)	503, 833
Bsh1285I	CGRYCG	1 cut(s)	442
BshFI	GGCC	3 cut(s)	237, 256, 647
BsiEI	CGRYCG	1 cut(s)	442
BsiSI	CCGG	1 cut(s)	1007
BslFI	GGGAC	1 cut(s)	832
BslI	CCNNNNNNNGG	3 cut(s)	823, 1013, 1105
BsmAI	GTCTC	5 cut(s)	184, 365, 744, 904, 910
BsmFI	GGGAC	1 cut(s)	832
BsnI	GGCC	3 cut(s)	237, 256, 647
Bso31I	GGTCTC	1 cut(s)	184
Bsp143I	GATC	6 cut(s)	241, 321, 622, 661, 694, 1042
Bsp19I	CCATGG	1 cut(s)	986
BspACI	CCGC	5 cut(s)	325, 534, 537, 799, 831
BspANI	GGCC	3 cut(s)	237, 256, 647
BspCNI	CTCAG	4 cut(s)	331, 588, 748, 932
BspFNI	CGCG	2 cut(s)	503, 833
BspPI	GGATC	2 cut(s)	316, 1037
BspTNI	GGTCTC	1 cut(s)	184
BsrDI	GCAATG	1 cut(s)	1203
BsrFI	RCCGGY	1 cut(s)	1006
BsrI	ACTGG	2 cut(s)	844, 896
BssAI	RCCGGY	1 cut(s)	1006
BssECI	CCNNGG	5 cut(s)	182, 251, 607, 787, 986
BssMI	GATC	6 cut(s)	241, 321, 622, 661, 694, 1042
BssNI	GRCGYC	1 cut(s)	362
BssT1I	CCWWGG	4 cut(s)	182, 251, 607, 986
Bst2UI	CCWGG	2 cut(s)	234, 789
Bst4CI	ACNGT	3 cut(s)	562, 704, 1268
Bst6I	CTCTTC	2 cut(s)	52, 413
BstACI	GRCGYC	1 cut(s)	362
BstC8I	GCNNGC	2 cut(s)	683, 803
BstDEI	CTNAG	6 cut(s)	32, 318, 575, 735, 919, 1323
BstDSI	CCRYGG	1 cut(s)	986
BstF5I	GGATG	2 cut(s)	730, 1000
BstFNI	CGCG	2 cut(s)	503, 833
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	6 cut(s)	244, 324, 625, 664, 697, 1045
BstMAI	GTCTC	5 cut(s)	184, 365, 744, 904, 910
BstMBI	GATC	6 cut(s)	241, 321, 622, 661, 694, 1042
BstMCI	CGRYCG	1 cut(s)	442
BstMWI	GCNNNNNNNGC	2 cut(s)	509, 798
BstNI	CCWGG	2 cut(s)	234, 789
BstNSI	RCATGY	1 cut(s)	685
BstSCI	CCNGG	2 cut(s)	232, 787
BstUI	CGCG	2 cut(s)	503, 833
BstV2I	GAAGAC	2 cut(s)	208, 1095
BstX2I	RGATCY	1 cut(s)	321
BstYI	RGATCY	1 cut(s)	321
BsuI	GTATCC	1 cut(s)	533
BsuRI	GGCC	3 cut(s)	237, 256, 647
BtgI	CCRYGG	1 cut(s)	986
BtgZI	GCGATG	1 cut(s)	1263
BtsCI	GGATG	2 cut(s)	730, 1000
Cac8I	GCNNGC	2 cut(s)	683, 803
CaiI	CAGNNNCTG	1 cut(s)	902
CfoI	GCGC	1 cut(s)	22
Cfr10I	RCCGGY	1 cut(s)	1006
Cfr13I	GGNCC	2 cut(s)	236, 495
CseI	GACGC	1 cut(s)	351
Csp6I	GTAC	2 cut(s)	144, 1269
CviAII	CATG	6 cut(s)	520, 583, 682, 793, 823, 987
CviQI	GTAC	2 cut(s)	144, 1269
DdeI	CTNAG	6 cut(s)	32, 318, 575, 735, 919, 1323
DpnI	GATC	6 cut(s)	243, 323, 624, 663, 696, 1044
DpnII	GATC	6 cut(s)	241, 321, 622, 661, 694, 1042
EaeI	YGGCCR	1 cut(s)	645
Eam1104I	CTCTTC	2 cut(s)	52, 413
EarI	CTCTTC	2 cut(s)	52, 413
EciI	GGCGGA	2 cut(s)	314, 552
Eco130I	CCWWGG	4 cut(s)	182, 251, 607, 986
Eco31I	GGTCTC	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	495
EcoRII	CCWGG	2 cut(s)	232, 787
EcoT14I	CCWWGG	4 cut(s)	182, 251, 607, 986
ErhI	CCWWGG	4 cut(s)	182, 251, 607, 986
FaeI	CATG	6 cut(s)	523, 586, 685, 796, 826, 990
FaqI	GGGAC	1 cut(s)	832
FatI	CATG	6 cut(s)	519, 582, 681, 792, 822, 986
Fnu4HI	GCNGC	1 cut(s)	535
FokI	GGATG	2 cut(s)	717, 1007
Fsp4HI	GCNGC	1 cut(s)	535
FspBI	CTAG	1 cut(s)	1026
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	1 cut(s)	535
HaeIII	GGCC	3 cut(s)	237, 256, 647
HapII	CCGG	1 cut(s)	1007
HgaI	GACGC	1 cut(s)	351
HhaI	GCGC	1 cut(s)	22
Hin1I	GRCGYC	1 cut(s)	362
Hin1II	CATG	6 cut(s)	523, 586, 685, 796, 826, 990
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HincII	GTYRAC	2 cut(s)	283, 1264
HindII	GTYRAC	2 cut(s)	283, 1264
HindIII	AAGCTT	1 cut(s)	1102
HinfI	GANTC	6 cut(s)	290, 316, 347, 1076, 1200, 1236
HpaI	GTTAAC	1 cut(s)	1264
HpaII	CCGG	1 cut(s)	1007
HphI	GGTGA	3 cut(s)	439, 716, 1045
Hpy166II	GTNNAC	5 cut(s)	283, 616, 814, 925, 1264
Hpy188I	TCNGA	5 cut(s)	321, 473, 484, 983, 1199
Hpy188III	TCNNGA	5 cut(s)	26, 313, 344, 437, 971
Hpy8I	GTNNAC	5 cut(s)	283, 616, 814, 925, 1264
Hpy99I	CGWCG	1 cut(s)	473
HpyAV	CCTTC	3 cut(s)	283, 352, 985
HpyCH4III	ACNGT	3 cut(s)	562, 704, 1268
HpyCH4IV	ACGT	2 cut(s)	468, 489
HpyCH4V	TGCA	5 cut(s)	85, 685, 859, 1219, 1255
HpyF10VI	GCNNNNNNNGC	2 cut(s)	509, 798
HpyF3I	CTNAG	6 cut(s)	32, 318, 575, 735, 919, 1323
HpySE526I	ACGT	2 cut(s)	468, 489
Hsp92I	GRCGYC	1 cut(s)	362
Hsp92II	CATG	6 cut(s)	523, 586, 685, 796, 826, 990
HspAI	GCGC	1 cut(s)	20
KspAI	GTTAAC	1 cut(s)	1264
Kzo9I	GATC	6 cut(s)	241, 321, 622, 661, 694, 1042
MaeI	CTAG	1 cut(s)	1026
MaeII	ACGT	2 cut(s)	468, 489
MaeIII	GTNAC	6 cut(s)	565, 704, 872, 1033, 1108, 1181
MalI	GATC	6 cut(s)	243, 323, 624, 663, 696, 1044
MboI	GATC	6 cut(s)	241, 321, 622, 661, 694, 1042
MflI	RGATCY	1 cut(s)	321
MluCI	AATT	3 cut(s)	308, 421, 657
MlyI	GAGTC	4 cut(s)	299, 310, 356, 1209
MmeI	TCCRAC	5 cut(s)	128, 451, 522, 581, 1006
MseI	TTAA	3 cut(s)	354, 1020, 1263
MslI	CAYNNNNRTG	3 cut(s)	690, 765, 1308
MspI	CCGG	1 cut(s)	1007
MspR9I	CCNGG	2 cut(s)	234, 789
MvaI	CCWGG	2 cut(s)	234, 789
MvnI	CGCG	2 cut(s)	503, 833
MwoI	GCNNNNNNNGC	2 cut(s)	509, 798
NcoI	CCATGG	1 cut(s)	986
NdeII	GATC	6 cut(s)	241, 321, 622, 661, 694, 1042
NlaIII	CATG	6 cut(s)	523, 586, 685, 796, 826, 990
NmuCI	GTSAC	2 cut(s)	704, 1033
NspI	RCATGY	1 cut(s)	685
PaeI	GCATGC	1 cut(s)	685
PcsI	WCGNNNNNNNCGW	1 cut(s)	1245
PfeI	GAWTC	2 cut(s)	1076, 1236
PflMI	CCANNNNNTGG	2 cut(s)	823, 1105
PkrI	GCNGC	1 cut(s)	536
PleI	GAGTC	4 cut(s)	298, 310, 355, 1208
PpsI	GAGTC	4 cut(s)	298, 310, 355, 1208
Psp1406I	AACGTT	1 cut(s)	489
Psp6I	CCWGG	2 cut(s)	232, 787
PspGI	CCWGG	2 cut(s)	232, 787
PspPI	GGNCC	2 cut(s)	236, 495
PstNI	CAGNNNCTG	1 cut(s)	902
PsuI	RGATCY	1 cut(s)	321
RsaI	GTAC	2 cut(s)	145, 1270
RsaNI	GTAC	2 cut(s)	144, 1269
RseI	CAYNNNNRTG	3 cut(s)	690, 765, 1308
SaqAI	TTAA	3 cut(s)	354, 1020, 1263
SatI	GCNGC	1 cut(s)	535
Sau3AI	GATC	6 cut(s)	241, 321, 622, 661, 694, 1042
Sau96I	GGNCC	2 cut(s)	236, 495
SchI	GAGTC	4 cut(s)	299, 310, 356, 1209
ScrFI	CCNGG	2 cut(s)	234, 789
SinI	GGWCC	1 cut(s)	495
SmiMI	CAYNNNNRTG	3 cut(s)	690, 765, 1308
SphI	GCATGC	1 cut(s)	685
Sse9I	AATT	3 cut(s)	308, 421, 657
SsiI	CCGC	5 cut(s)	325, 534, 537, 799, 831
SspMI	CTAG	1 cut(s)	1026
StyD4I	CCNGG	2 cut(s)	232, 787
StyI	CCWWGG	4 cut(s)	182, 251, 607, 986
TaaI	ACNGT	3 cut(s)	562, 704, 1268
TaiI	ACGT	2 cut(s)	471, 492
TaqI	TCGA	5 cut(s)	222, 438, 765, 972, 1239
TaqII	GACCGA	1 cut(s)	456
TasI	AATT	3 cut(s)	308, 421, 657
TatI	WGTACW	1 cut(s)	143
TauI	GCSGC	1 cut(s)	537
TfiI	GAWTC	2 cut(s)	1076, 1236
Tru1I	TTAA	3 cut(s)	354, 1020, 1263
Tru9I	TTAA	3 cut(s)	354, 1020, 1263
TseFI	GTSAC	2 cut(s)	704, 1033
Tsp45I	GTSAC	2 cut(s)	704, 1033
TspDTI	ATGAA	6 cut(s)	39, 286, 491, 809, 1142, 1326
TspGWI	ACGGA	2 cut(s)	799, 1286
Van91I	CCANNNNNTGG	2 cut(s)	823, 1105
VpaK11BI	GGWCC	1 cut(s)	495
XapI	RAATTY	1 cut(s)	308
XceI	RCATGY	1 cut(s)	685
XspI	CTAG	1 cut(s)	1026

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.