Rroxscaffold_1G00028610

Protein of unknown function, DUF604

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0005378
Physical Location & Seq
Reverse (-)
36468376 .. 36469509
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00028610.1

Sequence Viewer

Length: 816 bp
ATGGCATTTGGTGGTGCTGGTTATGCCTTGAGTTACCCACTAGTGGCAGCATTGTCAACAAAGTTGGATCAATGTATTGAGAGATATCCTTACTTGAGGGTTAGTGATTTTATGTTGCATGAATGTTTAACCGATTTAGGGGTTTCTCTGACTCAAGAAAAGGGGTTTCACCAGATTGATCTCCATGGTGACATATCAGGTCTTCTATCAAGTCATCCACAGTCTCCATTCCTCTCCCTCCACCACCTTGACGCCGTTGACCCAATCTTCCCCTCCATGAACCGTTCCGAGTCCGTTAACCACCTCATGAAGGCAGCAAAAGTTGACCCGTCTCGTCTTCTTCAACAAACCATATGTTACCACAGACCAAGTAACTGGTCTTTCTCAATCTCATGGGGCTACTCTGCTCACATATACGAAAATGTTATCCCTCGGAGTACTTTACAGAGACCCCTCGAGACATTCAGGCCTTATAAGAAGAATGTGAGACCGCCATTCTACATGTTCAACACGCGATGGCCCTCAAACGATCCATGTAAAGCTCCTCATGTGTTTTATTTTGATTCTATTGATCAGCGTGTTGAAGGAAACAAGACTGTTACCACTTATTCAAGAGTCGCGCCGCGTGGATTGCTGCCTTGTTCTTCAAGTGGTAACCACTCTGCGGATTTCATCACCAAAATCAAAGTCTATTCATCGCCAGACATACGCTTGGAGGTGAGAGGAAAAAACTGCTGTGACATAGCACATGCAGCTGATATTAACACTACTCAAGTCATTTACAGGTCTTGCATGGAGAGTGAAATTATCGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF604

Protein Analysis

271

Amino Acids

30.66

Weight (kDa)

8.09

Isoelectric Point (pI)

50.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF604 PF04646 1 - 236 1.4e-96 Protein of unknown function, DUF604
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 474
AccII CGCG 3 cut(s) 514, 620, 625
AciI CCGC 3 cut(s) 491, 623, 665
AclWI GGATC 2 cut(s) 75, 524
AcyI GRCGYC 1 cut(s) 252
AfaI GTAC 1 cut(s) 439
AfiI CCNNNNNNNGG 4 cut(s) 43, 138, 310, 664
AflIII ACRYGT 1 cut(s) 501
AgsI TTSAA 5 cut(s) 344, 508, 584, 612, 648
AhlI ACTAGT 1 cut(s) 40
AluBI AGCT 2 cut(s) 542, 755
AluI AGCT 2 cut(s) 542, 755
Alw26I GTCTC 5 cut(s) 228, 336, 442, 452, 481
AlwI GGATC 2 cut(s) 75, 524
Ama87I CYCGRG 1 cut(s) 455
AoxI GGCC 2 cut(s) 467, 518
ApeKI GCWGC 4 cut(s) 47, 314, 634, 752
ArsI GACNNNNNNTTYG 2 cut(s) 672, 704
AspLEI GCGC 1 cut(s) 622
AspS9I GGNCC 1 cut(s) 519
AsuHPI GGTGA 4 cut(s) 161, 200, 667, 730
AvaI CYCGRG 1 cut(s) 455
BbsI GAAGAC 2 cut(s) 194, 329
BbvI GCAGC 4 cut(s) 59, 326, 621, 764
BccI CCATC 1 cut(s) 510
BceAI ACGGC 1 cut(s) 239
BclI TGATCA 1 cut(s) 571
BcoDI GTCTC 5 cut(s) 228, 336, 442, 452, 481
BcuI ACTAGT 1 cut(s) 40
BfaI CTAG 2 cut(s) 41, 814
BisI GCNGC 5 cut(s) 48, 315, 623, 635, 753
BlsI GCNGC 5 cut(s) 49, 316, 624, 636, 754
BmcAI AGTACT 1 cut(s) 439
BmeT110I CYCGRG 1 cut(s) 455
BmgT120I GGNCC 1 cut(s) 519
BpiI GAAGAC 2 cut(s) 194, 329
BpuEI CTTGAG 4 cut(s) 49, 115, 138, 756
BsaHI GRCGYC 1 cut(s) 252
BsaI GGTCTC 2 cut(s) 442, 481
BsaJI CCNNGG 2 cut(s) 184, 431
Bsc4I CCNNNNNNNGG 4 cut(s) 43, 138, 310, 664
Bse1I ACTGG 1 cut(s) 380
BseDI CCNNGG 2 cut(s) 184, 431
BseGI GGATG 1 cut(s) 214
BseLI CCNNNNNNNGG 4 cut(s) 43, 138, 310, 664
BseNI ACTGG 1 cut(s) 380
BseRI GAGGAG 1 cut(s) 534
BseXI GCAGC 4 cut(s) 59, 326, 621, 764
Bsh1236I CGCG 3 cut(s) 514, 620, 625
BshFI GGCC 2 cut(s) 469, 520
BsiHKCI CYCGRG 1 cut(s) 455
BslI CCNNNNNNNGG 4 cut(s) 43, 138, 310, 664
BsmAI GTCTC 5 cut(s) 228, 336, 442, 452, 481
BsmBI CGTCTC 1 cut(s) 336
BsnI GGCC 2 cut(s) 469, 520
Bso31I GGTCTC 2 cut(s) 442, 481
BsoBI CYCGRG 1 cut(s) 455
Bsp143I GATC 4 cut(s) 67, 178, 529, 571
Bsp19I CCATGG 1 cut(s) 184
BspACI CCGC 3 cut(s) 491, 623, 665
BspANI GGCC 2 cut(s) 469, 520
BspFNI CGCG 3 cut(s) 514, 620, 625
BspHI TCATGA 1 cut(s) 306
BspPI GGATC 2 cut(s) 75, 524
BspTNI GGTCTC 2 cut(s) 442, 481
BsrI ACTGG 1 cut(s) 380
BssECI CCNNGG 2 cut(s) 184, 431
BssMI GATC 4 cut(s) 67, 178, 529, 571
BssNI GRCGYC 1 cut(s) 252
BssT1I CCWWGG 1 cut(s) 184
Bst4CI ACNGT 3 cut(s) 222, 284, 598
BstACI GRCGYC 1 cut(s) 252
BstDSI CCRYGG 1 cut(s) 184
BstEII GGTNACC 1 cut(s) 653
BstENI CCTNNNNNAGG 1 cut(s) 308
BstF5I GGATG 1 cut(s) 214
BstFNI CGCG 3 cut(s) 514, 620, 625
BstHHI GCGC 1 cut(s) 622
BstKTI GATC 4 cut(s) 70, 181, 532, 574
BstMAI GTCTC 5 cut(s) 228, 336, 442, 452, 481
BstMBI GATC 4 cut(s) 67, 178, 529, 571
BstMWI GCNNNNNNNGC 3 cut(s) 23, 631, 752
BstNSI RCATGY 2 cut(s) 505, 752
BstPI GGTNACC 1 cut(s) 653
BstUI CGCG 3 cut(s) 514, 620, 625
BstV1I GCAGC 4 cut(s) 59, 326, 621, 764
BstV2I GAAGAC 2 cut(s) 194, 329
BstXI CCANNNNNNTGG 1 cut(s) 375
BsuRI GGCC 2 cut(s) 469, 520
BtgI CCRYGG 1 cut(s) 184
BtgZI GCGATG 2 cut(s) 529, 681
BtsCI GGATG 1 cut(s) 214
CciI TCATGA 1 cut(s) 306
CfoI GCGC 1 cut(s) 622
Cfr13I GGNCC 1 cut(s) 519
CseI GACGC 1 cut(s) 260
Csp6I GTAC 1 cut(s) 438
CviJI RGCY 5 cut(s) 399, 469, 520, 542, 755
CviKI_1 RGCY 5 cut(s) 399, 469, 520, 542, 755
CviQI GTAC 1 cut(s) 438
DpnI GATC 4 cut(s) 69, 180, 531, 573
DpnII GATC 4 cut(s) 67, 178, 529, 571
Eco130I CCWWGG 1 cut(s) 184
Eco147I AGGCCT 1 cut(s) 469
Eco31I GGTCTC 2 cut(s) 442, 481
Eco32I GATATC 1 cut(s) 86
Eco88I CYCGRG 1 cut(s) 455
Eco91I GGTNACC 1 cut(s) 653
EcoNI CCTNNNNNAGG 1 cut(s) 308
EcoO65I GGTNACC 1 cut(s) 653
EcoRV GATATC 1 cut(s) 86
EcoT14I CCWWGG 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 184
Esp3I CGTCTC 1 cut(s) 336
FauNDI CATATG 1 cut(s) 353
FbaI TGATCA 1 cut(s) 571
Fnu4HI GCNGC 5 cut(s) 48, 315, 623, 635, 753
FokI GGATG 1 cut(s) 201
Fsp4HI GCNGC 5 cut(s) 48, 315, 623, 635, 753
FspBI CTAG 2 cut(s) 41, 814
GlaI GCGC 1 cut(s) 621
GluI GCNGC 5 cut(s) 48, 315, 623, 635, 753
HaeIII GGCC 2 cut(s) 469, 520
HgaI GACGC 1 cut(s) 260
HhaI GCGC 1 cut(s) 622
Hin1I GRCGYC 1 cut(s) 252
Hin6I GCGC 1 cut(s) 620
HinP1I GCGC 1 cut(s) 620
HincII GTYRAC 4 cut(s) 57, 259, 298, 325
HindII GTYRAC 4 cut(s) 57, 259, 298, 325
HinfI GANTC 4 cut(s) 151, 290, 563, 615
HpaI GTTAAC 1 cut(s) 298
HphI GGTGA 4 cut(s) 161, 200, 667, 730
Hpy166II GTNNAC 4 cut(s) 57, 259, 298, 325
Hpy188I TCNGA 3 cut(s) 150, 289, 435
Hpy188III TCNNGA 4 cut(s) 155, 307, 457, 612
Hpy8I GTNNAC 4 cut(s) 57, 259, 298, 325
HpyAV CCTTC 2 cut(s) 304, 578
HpyCH4III ACNGT 3 cut(s) 222, 284, 598
HpyCH4V TGCA 3 cut(s) 118, 752, 792
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 631, 752
Hsp92I GRCGYC 1 cut(s) 252
HspAI GCGC 1 cut(s) 620
Ksp22I TGATCA 1 cut(s) 571
KspAI GTTAAC 1 cut(s) 298
Kzo9I GATC 4 cut(s) 67, 178, 529, 571
LmnI GCTCC 1 cut(s) 547
LpnPI CCDG 7 cut(s) 3, 183, 185, 361, 451, 714, 769
Lsp1109I GCAGC 4 cut(s) 59, 326, 621, 764
MaeI CTAG 2 cut(s) 41, 814
MaeIII GTNAC 7 cut(s) 32, 188, 356, 371, 598, 653, 737
MalI GATC 4 cut(s) 69, 180, 531, 573
MboI GATC 4 cut(s) 67, 178, 529, 571
MboII GAAGA 6 cut(s) 194, 259, 329, 332, 490, 636
MluCI AATT 1 cut(s) 804
MlyI GAGTC 3 cut(s) 145, 299, 624
MmeI TCCRAC 1 cut(s) 45
MseI TTAA 3 cut(s) 128, 297, 762
MspA1I CMGCKG 1 cut(s) 755
MvnI CGCG 3 cut(s) 514, 620, 625
MwoI GCNNNNNNNGC 3 cut(s) 23, 631, 752
NcoI CCATGG 1 cut(s) 184
NdeI CATATG 1 cut(s) 353
NdeII GATC 4 cut(s) 67, 178, 529, 571
NmuCI GTSAC 2 cut(s) 188, 737
NspI RCATGY 2 cut(s) 505, 752
PaeR7I CTCGAG 1 cut(s) 455
PagI TCATGA 1 cut(s) 306
PceI AGGCCT 1 cut(s) 469
PciI ACATGT 1 cut(s) 501
PfeI GAWTC 1 cut(s) 563
PkrI GCNGC 5 cut(s) 49, 316, 624, 636, 754
PleI GAGTC 3 cut(s) 145, 298, 623
PpsI GAGTC 3 cut(s) 145, 298, 623
PscI ACATGT 1 cut(s) 501
PsiI TTATAA 1 cut(s) 474
PspEI GGTNACC 1 cut(s) 653
PspPI GGNCC 1 cut(s) 519
PvuII CAGCTG 1 cut(s) 755
RsaI GTAC 1 cut(s) 439
RsaNI GTAC 1 cut(s) 438
SaqAI TTAA 3 cut(s) 128, 297, 762
SatI GCNGC 5 cut(s) 48, 315, 623, 635, 753
Sau3AI GATC 4 cut(s) 67, 178, 529, 571
Sau96I GGNCC 1 cut(s) 519
ScaI AGTACT 1 cut(s) 439
SchI GAGTC 3 cut(s) 145, 299, 624
SetI ASST 7 cut(s) 202, 249, 306, 544, 720, 757, 788
Sfr274I CTCGAG 1 cut(s) 455
SlaI CTCGAG 1 cut(s) 455
SmlI CTYRAG 5 cut(s) 28, 94, 153, 455, 771
SmoI CTYRAG 5 cut(s) 28, 94, 153, 455, 771
SpeI ACTAGT 1 cut(s) 40
Sse9I AATT 1 cut(s) 804
SseBI AGGCCT 1 cut(s) 469
SsiI CCGC 3 cut(s) 491, 623, 665
SspMI CTAG 2 cut(s) 41, 814
StuI AGGCCT 1 cut(s) 469
StyI CCWWGG 1 cut(s) 184
TaaI ACNGT 3 cut(s) 222, 284, 598
TaqI TCGA 1 cut(s) 456
TasI AATT 1 cut(s) 804
TatI WGTACW 1 cut(s) 437
TauI GCSGC 1 cut(s) 625
TfiI GAWTC 1 cut(s) 563
Tru1I TTAA 3 cut(s) 128, 297, 762
Tru9I TTAA 3 cut(s) 128, 297, 762
TseFI GTSAC 2 cut(s) 188, 737
TseI GCWGC 4 cut(s) 47, 314, 634, 752
Tsp45I GTSAC 2 cut(s) 188, 737
TspDTI ATGAA 5 cut(s) 135, 293, 323, 661, 684
TspGWI ACGGA 1 cut(s) 283
XagI CCTNNNNNAGG 1 cut(s) 308
XceI RCATGY 2 cut(s) 505, 752
XhoI CTCGAG 1 cut(s) 455
XspI CTAG 2 cut(s) 41, 814
ZrmI AGTACT 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.