RchiOBHm_Chr5g0052781

Protein of unknown function, DUF604

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
54861975 .. 54864542
2568 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33015

Sequence Viewer

Length: 1497 bp
ATGCGTTCCCCACGCTCCCACAACTCTACCACAACTCGACAAAAACAAGCAAACCCTCTATCTTTTGGATTTCTATCAAAATCCCTAGCAATTTCAAGCTTAATCCTAGCAATTTCAAGCTTAATCCTAATATCGTTGTACATTTTTTTCTTTGACGAATCATATAACTATCAACCTTCCAGTCTCCTCCTCAGAACCTTCCAAAAAAACTTCCAGGCCACGGCTACACGTCCCCACAGCCACCCTCCTACCAATTTAAGCCACATTGTGATCGGAATGGTTGGCGCTCTCAAGACATTGAAGCACAAAACAGCATACATTAAAGCATGGTGGCGGCCTAATGTCAGTCGAGGATACCTCTTTTTGGATAGAGCTCCTACTTCAGAGTTTTTGCCTTGGCCATCATCTTATCCTCCTTTTCGTGTCAATGAGGACGTCACTAGATTAAAAGTGTACCCGAAAATTGCGAATCCGATACAAGTACGAATAGTGCGTTCAATTTTGGAGATATTTAGAGAGGGTGACAAAAATGTAAGATGGTATGTAATGTCGGATGATGACACCATTTTTGTGCTTGATAATTTGGTTGAAGTTCTAGCAAAGTATGACCATACTAGGTATCATTACATTGGTACAAGTTCGGAGTTTGTCAAGTCTAATTCCGATTTTTCATTCGATATGGCATTCGGTGGTGCTGGTTATATTTTGAGTTACCCACTGGTGGCAGCATTGTCAACAAAGTTGGATGATTGTATTGAGAGATATTCATACTCCTGGTTTAGCGATTTGACATTACACGAATGTTTAACCGATTTAGGAGTTATTCTAACTGAAGAAAAGGGACTTCACCAGATTGATCTCCGTGGTGACATATCAGGTCTTCTATCGTCTCATCCGCAATCTCCATTCCTCTCCATCCACCACCTCGATACTGTTGACCCAATCTTCCCTTCCATGAACCGCTCTGACTCCATTAACCACCTCATGAAAGCTGCAAAAGTTGATCCTTCTCGTCTTCTTCAACAAACCATATGCTACCACAGACCAAGCAATTGGTCTTTCTCAATCTCATGGGGTTATTCTGCTCACATTTATGAAAACATAATCCCCCGGAGCACTTTAAGGAGGCCCATTGAGACATTCTCGCGTTGGAGGAACGCAAGCCGACCATTCTACATGTTCAACACCAGGTTGCCCTCCAAGGATCCATGTCGAGCTCCCCATGTGTTTTATTTTGATTCTATTGATCCTCGTGTCGATGGAAGGAAGACTAAGACTGTTACAACTTTTTCAAGAGTAGCTCCGCGTGGTTTGGTGTCATGTTCTTCAAGTGGTAACCACTCTGCGGATTCCATCACCAAAATTGAGGTCTATACATCGCCAGAATTCCGTTTGGAGATGAAAGGAAAGGACTGCTGTGACATAGTACATGCAGCTGATATTCACACTACTCGAGTCACATACAGGTCTTGCGTGGAGGGTGAAATTATCGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

498

Amino Acids

56.91

Weight (kDa)

9.07

Isoelectric Point (pI)

52.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fringe PF02434 171 - 284 7.7e-13 Fringe-like
DUF604 PF04646 220 - 463 2.1e-94 Protein of unknown function, DUF604
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 438
AccBSI CCGCTC 1 cut(s) 963
AccII CGCG 2 cut(s) 1147, 1306
AciI CCGC 5 cut(s) 334, 896, 961, 1304, 1346
AclWI GGATC 4 cut(s) 998, 1199, 1212, 1241
AcoI YGGCCR 1 cut(s) 398
AcsI RAATTY 1 cut(s) 1385
AcuI CTGAAG 2 cut(s) 366, 852
AcyI GRCGYC 1 cut(s) 435
AdeI CACNNNGTG 1 cut(s) 268
AfaI GTAC 5 cut(s) 140, 455, 483, 634, 1428
AfiI CCNNNNNNNGG 4 cut(s) 220, 364, 721, 1345
AflIII ACRYGT 2 cut(s) 227, 1176
AgsI TTSAA 9 cut(s) 96, 117, 301, 498, 590, 1022, 1183, 1293, 1329
AjiI CACGTC 1 cut(s) 230
AjnI CCWGG 3 cut(s) 213, 773, 1187
AjuI GAANNNNNNNTTGG 2 cut(s) 934, 966
AluBI AGCT 7 cut(s) 99, 120, 374, 992, 1217, 1301, 1436
AluI AGCT 7 cut(s) 99, 120, 374, 992, 1217, 1301, 1436
Alw21I GWGCWC 3 cut(s) 376, 1118, 1219
Alw26I GTCTC 3 cut(s) 188, 894, 1130
AlwI GGATC 4 cut(s) 998, 1199, 1212, 1241
Ama87I CYCGRG 1 cut(s) 1452
AoxI GGCC 4 cut(s) 216, 335, 398, 1127
ApeKI GCWGC 3 cut(s) 725, 992, 1433
ApoI RAATTY 1 cut(s) 1385
ArsI GACNNNNNNTTYG 4 cut(s) 551, 583, 1353, 1385
AspLEI GCGC 1 cut(s) 287
AspS9I GGNCC 1 cut(s) 1128
AsuC2I CCSGG 1 cut(s) 1111
AsuHPI GGTGA 5 cut(s) 533, 839, 878, 1348, 1493
AvaI CYCGRG 1 cut(s) 1452
BalI TGGCCA 1 cut(s) 400
BamHI GGATCC 1 cut(s) 1204
BanII GRGCYC 2 cut(s) 376, 1219
BauI CACGAG 1 cut(s) 1251
BbsI GAAGAC 3 cut(s) 872, 1007, 1274
Bbv12I GWGCWC 3 cut(s) 376, 1118, 1219
BbvI GCAGC 3 cut(s) 737, 979, 1445
BccI CCATC 5 cut(s) 409, 531, 923, 1253, 1361
BceAI ACGGC 1 cut(s) 237
BciT130I CCWGG 3 cut(s) 215, 775, 1189
BciVI GTATCC 1 cut(s) 347
BcnI CCSGG 1 cut(s) 1111
BcoDI GTCTC 3 cut(s) 188, 894, 1130
BfaI CTAG 5 cut(s) 86, 107, 441, 596, 615
BfoI RGCGCY 1 cut(s) 288
BfuI GTATCC 1 cut(s) 347
BisI GCNGC 4 cut(s) 335, 726, 993, 1434
BlsI GCNGC 4 cut(s) 336, 727, 994, 1435
Bme1390I CCNGG 4 cut(s) 215, 775, 1111, 1189
BmeT110I CYCGRG 1 cut(s) 1452
BmgBI CACGTC 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 1128
BmiI GGNNCC 1 cut(s) 1206
BmrFI CCNGG 4 cut(s) 215, 775, 1111, 1189
BpiI GAAGAC 3 cut(s) 872, 1007, 1274
BplI GAGNNNNNCTC 4 cut(s) 342, 374, 1127, 1159
BpuEI CTTGAG 1 cut(s) 275
BpuMI CCSGG 1 cut(s) 1111
BsaBI GATNNNNATC 1 cut(s) 73
BsaHI GRCGYC 1 cut(s) 435
BsaJI CCNNGG 5 cut(s) 219, 395, 862, 1109, 1200
Bsc4I CCNNNNNNNGG 4 cut(s) 220, 364, 721, 1345
Bse1I ACTGG 2 cut(s) 180, 723
Bse8I GATNNNNATC 1 cut(s) 73
BseBI CCWGG 3 cut(s) 215, 775, 1189
BseDI CCNNGG 5 cut(s) 219, 395, 862, 1109, 1200
BseGI GGATG 4 cut(s) 559, 751, 892, 915
BseJI GATNNNNATC 1 cut(s) 73
BseLI CCNNNNNNNGG 4 cut(s) 220, 364, 721, 1345
BseMII CTCAG 1 cut(s) 205
BseNI ACTGG 2 cut(s) 180, 723
BseRI GAGGAG 2 cut(s) 176, 179
BseXI GCAGC 3 cut(s) 737, 979, 1445
Bsh1236I CGCG 2 cut(s) 1147, 1306
BshFI GGCC 4 cut(s) 218, 337, 400, 1129
BsiHKAI GWGCWC 3 cut(s) 376, 1118, 1219
BsiHKCI CYCGRG 1 cut(s) 1452
BsiSI CCGG 1 cut(s) 1111
BslFI GGGAC 2 cut(s) 216, 855
BslI CCNNNNNNNGG 4 cut(s) 220, 364, 721, 1345
BsmAI GTCTC 3 cut(s) 188, 894, 1130
BsmBI CGTCTC 1 cut(s) 894
BsmFI GGGAC 2 cut(s) 216, 855
BsmI GAATGC 1 cut(s) 683
BsnI GGCC 4 cut(s) 218, 337, 400, 1129
BsoBI CYCGRG 1 cut(s) 1452
Bsp1286I GDGCHC 3 cut(s) 376, 1118, 1219
Bsp1407I TGTACA 1 cut(s) 138
Bsp143I GATC 5 cut(s) 270, 856, 1003, 1204, 1246
BspACI CCGC 5 cut(s) 334, 896, 961, 1304, 1346
BspANI GGCC 4 cut(s) 218, 337, 400, 1129
BspCNI CTCAG 1 cut(s) 204
BspFNI CGCG 2 cut(s) 1147, 1306
BspHI TCATGA 1 cut(s) 984
BspLI GGNNCC 1 cut(s) 1206
BspPI GGATC 4 cut(s) 998, 1199, 1212, 1241
BsrBI CCGCTC 1 cut(s) 963
BsrGI TGTACA 1 cut(s) 138
BsrI ACTGG 2 cut(s) 180, 723
BssECI CCNNGG 5 cut(s) 219, 395, 862, 1109, 1200
BssMI GATC 5 cut(s) 270, 856, 1003, 1204, 1246
BssNI GRCGYC 1 cut(s) 435
BssSI CACGAG 1 cut(s) 1251
BssT1I CCWWGG 2 cut(s) 395, 1200
Bst2BI CACGAG 1 cut(s) 1251
Bst2UI CCWGG 3 cut(s) 215, 775, 1189
Bst4CI ACNGT 2 cut(s) 934, 1279
BstACI GRCGYC 1 cut(s) 435
BstAUI TGTACA 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 1162
BstDEI CTNAG 2 cut(s) 191, 1272
BstDSI CCRYGG 2 cut(s) 219, 862
BstEII GGTNACC 1 cut(s) 1334
BstF5I GGATG 4 cut(s) 559, 751, 892, 915
BstFNI CGCG 2 cut(s) 1147, 1306
BstH2I RGCGCY 1 cut(s) 288
BstHHI GCGC 1 cut(s) 287
BstKTI GATC 5 cut(s) 273, 859, 1006, 1207, 1249
BstMAI GTCTC 3 cut(s) 188, 894, 1130
BstMBI GATC 5 cut(s) 270, 856, 1003, 1204, 1246
BstNI CCWGG 3 cut(s) 215, 775, 1189
BstNSI RCATGY 2 cut(s) 1180, 1433
BstPI GGTNACC 1 cut(s) 1334
BstSCI CCNGG 4 cut(s) 213, 773, 1109, 1187
BstUI CGCG 2 cut(s) 1147, 1306
BstV1I GCAGC 3 cut(s) 737, 979, 1445
BstV2I GAAGAC 3 cut(s) 872, 1007, 1274
BstX2I RGATCY 1 cut(s) 1204
BstXI CCANNNNNNTGG 1 cut(s) 1053
BstYI RGATCY 1 cut(s) 1204
BsuI GTATCC 1 cut(s) 347
BsuRI GGCC 4 cut(s) 218, 337, 400, 1129
BtgI CCRYGG 2 cut(s) 219, 862
BtgZI GCGATG 1 cut(s) 1362
BtrI CACGTC 1 cut(s) 230
BtsCI GGATG 4 cut(s) 559, 751, 892, 915
BtsIMutI CAGTG 1 cut(s) 716
Cac8I GCNNGC 1 cut(s) 1162
CciI TCATGA 1 cut(s) 984
CfoI GCGC 1 cut(s) 287
Cfr13I GGNCC 1 cut(s) 1128
CsiI ACCWGGT 1 cut(s) 1187
Csp6I GTAC 5 cut(s) 139, 454, 482, 633, 1427
CviAII CATG 9 cut(s) 327, 955, 985, 1071, 1177, 1209, 1223, 1320, 1430
CviQI GTAC 5 cut(s) 139, 454, 482, 633, 1427
DdeI CTNAG 2 cut(s) 191, 1272
DpnI GATC 5 cut(s) 272, 858, 1005, 1206, 1248
DpnII GATC 5 cut(s) 270, 856, 1003, 1204, 1246
DraIII CACNNNGTG 1 cut(s) 268
EaeI YGGCCR 1 cut(s) 398
Ecl136II GAGCTC 2 cut(s) 374, 1217
Eco130I CCWWGG 2 cut(s) 395, 1200
Eco24I GRGCYC 2 cut(s) 376, 1219
Eco53kI GAGCTC 2 cut(s) 374, 1217
Eco57I CTGAAG 2 cut(s) 366, 852
Eco88I CYCGRG 1 cut(s) 1452
Eco91I GGTNACC 1 cut(s) 1334
EcoICRI GAGCTC 2 cut(s) 374, 1217
EcoO65I GGTNACC 1 cut(s) 1334
EcoRI GAATTC 1 cut(s) 1385
EcoRII CCWGG 3 cut(s) 213, 773, 1187
EcoT14I CCWWGG 2 cut(s) 395, 1200
EcoT38I GRGCYC 2 cut(s) 376, 1219
ErhI CCWWGG 2 cut(s) 395, 1200
Esp3I CGTCTC 1 cut(s) 894
FaeI CATG 9 cut(s) 330, 958, 988, 1074, 1180, 1212, 1226, 1323, 1433
FaqI GGGAC 2 cut(s) 216, 855
FatI CATG 9 cut(s) 326, 954, 984, 1070, 1176, 1208, 1222, 1319, 1429
FauNDI CATATG 1 cut(s) 1031
Fnu4HI GCNGC 4 cut(s) 335, 726, 993, 1434
FokI GGATG 4 cut(s) 566, 758, 879, 902
FriOI GRGCYC 2 cut(s) 376, 1219
Fsp4HI GCNGC 4 cut(s) 335, 726, 993, 1434
FspBI CTAG 5 cut(s) 86, 107, 441, 596, 615
GlaI GCGC 1 cut(s) 286
GluI GCNGC 4 cut(s) 335, 726, 993, 1434
HaeII RGCGCY 1 cut(s) 288
HaeIII GGCC 4 cut(s) 218, 337, 400, 1129
HapII CCGG 1 cut(s) 1111
HhaI GCGC 1 cut(s) 287
Hin1I GRCGYC 1 cut(s) 435
Hin1II CATG 9 cut(s) 330, 958, 988, 1074, 1180, 1212, 1226, 1323, 1433
Hin6I GCGC 1 cut(s) 285
HinP1I GCGC 1 cut(s) 285
HincII GTYRAC 2 cut(s) 735, 937
HindII GTYRAC 2 cut(s) 735, 937
HindIII AAGCTT 2 cut(s) 97, 118
HinfI GANTC 6 cut(s) 158, 469, 968, 1238, 1349, 1455
HpaII CCGG 1 cut(s) 1111
HphI GGTGA 5 cut(s) 533, 839, 878, 1348, 1493
Hpy166II GTNNAC 3 cut(s) 454, 735, 937
Hpy188I TCNGA 8 cut(s) 194, 275, 385, 474, 553, 643, 664, 967
Hpy188III TCNNGA 3 cut(s) 292, 985, 1293
Hpy8I GTNNAC 3 cut(s) 454, 735, 937
HpyAV CCTTC 5 cut(s) 186, 208, 960, 1017, 1257
HpyCH4III ACNGT 2 cut(s) 934, 1279
HpyCH4IV ACGT 2 cut(s) 229, 435
HpyCH4V TGCA 2 cut(s) 995, 1433
HpyF3I CTNAG 2 cut(s) 191, 1272
HpySE526I ACGT 2 cut(s) 229, 435
Hsp92I GRCGYC 1 cut(s) 435
Hsp92II CATG 9 cut(s) 330, 958, 988, 1074, 1180, 1212, 1226, 1323, 1433
HspAI GCGC 1 cut(s) 285
Kzo9I GATC 5 cut(s) 270, 856, 1003, 1204, 1246
LmnI GCTCC 5 cut(s) 20, 379, 1113, 1222, 1306
Lsp1109I GCAGC 3 cut(s) 737, 979, 1445
MabI ACCWGGT 1 cut(s) 1187
MaeI CTAG 5 cut(s) 86, 107, 441, 596, 615
MaeII ACGT 2 cut(s) 229, 435
MaeIII GTNAC 8 cut(s) 436, 521, 710, 866, 1279, 1334, 1418, 1456
MalI GATC 5 cut(s) 272, 858, 1005, 1206, 1248
MbiI CCGCTC 1 cut(s) 963
MboI GATC 5 cut(s) 270, 856, 1003, 1204, 1246
MboII GAAGA 7 cut(s) 845, 872, 937, 1007, 1010, 1279, 1317
MfeI CAATTG 1 cut(s) 1051
MflI RGATCY 1 cut(s) 1204
MhlI GDGCHC 3 cut(s) 376, 1118, 1219
MlsI TGGCCA 1 cut(s) 400
MluNI TGGCCA 1 cut(s) 400
MlyI GAGTC 2 cut(s) 962, 1464
MmeI TCCRAC 3 cut(s) 531, 723, 1130
Mox20I TGGCCA 1 cut(s) 400
MscI TGGCCA 1 cut(s) 400
MseI TTAA 8 cut(s) 101, 122, 257, 321, 446, 806, 975, 1121
MslI CAYNNNNRTG 2 cut(s) 569, 1092
Msp20I TGGCCA 1 cut(s) 400
MspA1I CMGCKG 1 cut(s) 1436
MspI CCGG 1 cut(s) 1111
MspR9I CCNGG 4 cut(s) 215, 775, 1111, 1189
MunI CAATTG 1 cut(s) 1051
Mva1269I GAATGC 1 cut(s) 683
MvaI CCWGG 3 cut(s) 215, 775, 1189
MvnI CGCG 2 cut(s) 1147, 1306
NciI CCSGG 1 cut(s) 1111
NdeI CATATG 1 cut(s) 1031
NdeII GATC 5 cut(s) 270, 856, 1003, 1204, 1246
NlaIII CATG 9 cut(s) 330, 958, 988, 1074, 1180, 1212, 1226, 1323, 1433
NlaIV GGNNCC 1 cut(s) 1206
NmuCI GTSAC 5 cut(s) 436, 521, 866, 1418, 1456
NspI RCATGY 2 cut(s) 1180, 1433
PaeR7I CTCGAG 1 cut(s) 1452
PagI TCATGA 1 cut(s) 984
PciI ACATGT 1 cut(s) 1176
PcsI WCGNNNNNNNCGW 1 cut(s) 490
PctI GAATGC 1 cut(s) 683
PfeI GAWTC 4 cut(s) 158, 469, 1238, 1349
PkrI GCNGC 4 cut(s) 336, 727, 994, 1435
PleI GAGTC 2 cut(s) 962, 1463
PpsI GAGTC 2 cut(s) 962, 1463
PscI ACATGT 1 cut(s) 1176
Psp124BI GAGCTC 2 cut(s) 376, 1219
Psp6I CCWGG 3 cut(s) 213, 773, 1187
PspEI GGTNACC 1 cut(s) 1334
PspGI CCWGG 3 cut(s) 213, 773, 1187
PspN4I GGNNCC 1 cut(s) 1206
PspPI GGNCC 1 cut(s) 1128
PspXI VCTCGAGB 1 cut(s) 1452
PsuI RGATCY 1 cut(s) 1204
PvuII CAGCTG 1 cut(s) 1436
RsaI GTAC 5 cut(s) 140, 455, 483, 634, 1428
RsaNI GTAC 5 cut(s) 139, 454, 482, 633, 1427
RseI CAYNNNNRTG 2 cut(s) 569, 1092
SacI GAGCTC 2 cut(s) 376, 1219
SaqAI TTAA 8 cut(s) 101, 122, 257, 321, 446, 806, 975, 1121
SatI GCNGC 4 cut(s) 335, 726, 993, 1434
Sau3AI GATC 5 cut(s) 270, 856, 1003, 1204, 1246
Sau96I GGNCC 1 cut(s) 1128
SchI GAGTC 2 cut(s) 962, 1464
ScrFI CCNGG 4 cut(s) 215, 775, 1111, 1189
SduI GDGCHC 3 cut(s) 376, 1118, 1219
SexAI ACCWGGT 1 cut(s) 1187
Sfr274I CTCGAG 1 cut(s) 1452
SlaI CTCGAG 1 cut(s) 1452
SmiMI CAYNNNNRTG 2 cut(s) 569, 1092
SmlI CTYRAG 2 cut(s) 290, 1452
SmoI CTYRAG 2 cut(s) 290, 1452
SsiI CCGC 5 cut(s) 334, 896, 961, 1304, 1346
SspMI CTAG 5 cut(s) 86, 107, 441, 596, 615
SstI GAGCTC 2 cut(s) 376, 1219
StyD4I CCNGG 4 cut(s) 213, 773, 1109, 1187
StyI CCWWGG 2 cut(s) 395, 1200
TaaI ACNGT 2 cut(s) 934, 1279
TaiI ACGT 2 cut(s) 232, 438
TaqI TCGA 7 cut(s) 37, 349, 675, 927, 1213, 1257, 1453
TatI WGTACW 2 cut(s) 138, 1426
TauI GCSGC 1 cut(s) 337
TfiI GAWTC 4 cut(s) 158, 469, 1238, 1349
Tru1I TTAA 8 cut(s) 101, 122, 257, 321, 446, 806, 975, 1121
Tru9I TTAA 8 cut(s) 101, 122, 257, 321, 446, 806, 975, 1121
TscAI CASTG 1 cut(s) 723
TseFI GTSAC 5 cut(s) 436, 521, 866, 1418, 1456
TseI GCWGC 3 cut(s) 725, 992, 1433
Tsp45I GTSAC 5 cut(s) 436, 521, 866, 1418, 1456
TspDTI ATGAA 6 cut(s) 660, 756, 971, 1001, 1110, 1415
TspGWI ACGGA 2 cut(s) 851, 1379
TspRI CASTG 1 cut(s) 723
XapI RAATTY 1 cut(s) 1385
XceI RCATGY 2 cut(s) 1180, 1433
XhoI CTCGAG 1 cut(s) 1452
XspI CTAG 5 cut(s) 86, 107, 441, 596, 615
ZraI GACGTC 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.