MD03G1172600.v1.1

Protein of unknown function, DUF604

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
23555074 .. 23557059
1986 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1172600.v1.1.491

Sequence Viewer

Length: 1512 bp
ATGTGTTCCCCACCTATCGCAACCTCTAGCACAAAACAGAAACCTTTACCTCTTGGAGCTTTATGCAAAGCCGTAGCTATTTCAGGAGTAACCCTATTGTTTTTCTACATATTTTTGTTTGATAAATCATCAGTAAACTACCAATTACCTTCAAATCTCTTCAAAACCTTGAAAGAAAGTTTTCCAGCGGCTACAAGTCCCCTCAGAAGTTCCCCTCCTACCAATCTAAGACACATTGTTTTCGGAATTGTTGGCTCCATGAACACATGGAAGGCGAAAAGGCCATACATTGAAGTGTGGTGGCGATCTAATGTCACCCGAGGATACCTTTTTTTAGACAGAGCTCCTACGCCGGAGTTTCTACCTTGGCCTTCGTCTTCTCCTCCTTTTCGAGTTAATGAGGACTTCACTAGATTGAAAGGTTACCCGCAAGTTCGTAAGCTAGTCCAAGTACGCATAGTACGTACAATCTTGGAGACATTTAGAGAGGGTGACAAAGATGTGCGATGGTATGTAATGGCGGATGACGATACTGTCCTCTTGGTTGATAATTTAGTTGAGGTTCTAGAAAAGTACGACCATGAAAAGTACCACTACATTGGTATGAATTCGGAATGTGTCAAGTCTAACTTCGATTTTTCGTTCAATATGGCATTTGGCGGCGCTGGTTATGCTCTGAGTTACCCGTTAATGGCAGCAGTGGCAACAAAGTTGGACGGGTGTATTGAGAGATATCCATACATCTGGGTCAGTGATTTTATGTTGCAGTCATGTTTAGCTGACTTAGGAGTCGCTCTAACTCAGGAAAAAGGGTTTCATCAGATTGATCTCCATGGTGATATATCAGGTCTTTTGTCATCTCATCCAGAGTTTCCTTTCCTCTCCCTCCACCACCTTGACACCATAAACCCAATCTTCCCCTCCATGAACCGCTCCGAGTCCATTAACCACCTCATGAAGTCAGCAAAAGTTGACCACTCTCGTCTGCTACAACAAACCATATGCTACCATAGACCAAGCAATTGGTCTTTCTCAATCTCATGGGGATATTCTGCTCACATTTACGAAACCATAATCCCTCGGAGCATTCTACGGAGACCCCTCGAAACATTTAGGCCTTGGGTGCATAATGCAAGAGCACCTCTCTACATGTTCAACACCCGGTGGCCATCCAACAATCCGTGTGAAGCTCCTCATGTGTTTTTCTTTGAATCCATTTATCAGAACAATACTATTGAAGGAAGACAAACTGTAACAACAACTTATTCTAGAGCATCGCAGCGCGGTTTACCTCCTTGTTCTTCGAGTGGCAACCATTCGGCAGATTTCATCAGCAAAATTCAGGTCCAGTCATTGCCTGCAAAACGTTTGGAGGTCAGCTTTTTCGACAGTCTCTACTGCCTCTCATTTAGCGCTAGAGGGATAGACTGCTGTGATATAGTATATGAACCTGACATTAACACTGCTCAAGTCATATACAGGGCTTGCATGGATGGAGAAATTATCGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

504

Amino Acids

57.37

Weight (kDa)

8.17

Isoelectric Point (pI)

50.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fringe PF02434 158 - 274 4.9e-13 Fringe-like
DUF604 PF04646 210 - 453 9.1e-95 Protein of unknown function, DUF604
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 533, 788
AccBSI CCGCTC 1 cut(s) 933
AccII CGCG 1 cut(s) 1284
AciI CCGC 6 cut(s) 188, 428, 521, 660, 931, 1284
AclI AACGTT 1 cut(s) 1366
AcoI YGGCCR 1 cut(s) 1166
AcsI RAATTY 2 cut(s) 607, 1338
AdeI CACNNNGTG 1 cut(s) 1164
AfaI GTAC 5 cut(s) 453, 462, 466, 575, 590
AfeI AGCGCT 1 cut(s) 1414
AfiI CCNNNNNNNGG 1 cut(s) 691
AflIII ACRYGT 1 cut(s) 1149
AgsI TTSAA 9 cut(s) 153, 163, 172, 293, 418, 646, 1156, 1211, 1238
AluBI AGCT 7 cut(s) 59, 77, 344, 442, 779, 1190, 1380
AluI AGCT 7 cut(s) 59, 77, 344, 442, 779, 1190, 1380
Alw21I GWGCWC 2 cut(s) 346, 1141
Alw26I GTCTC 3 cut(s) 470, 1090, 1397
Ama87I CYCGRG 1 cut(s) 318
Aor51HI AGCGCT 1 cut(s) 1414
AoxI GGCC 4 cut(s) 281, 368, 1115, 1166
ApeKI GCWGC 2 cut(s) 695, 1279
ApoI RAATTY 2 cut(s) 607, 1338
ArsI GACNNNNNNTTYG 2 cut(s) 1329, 1361
Asp700I GAANNNNTTC 1 cut(s) 180
AspLEI GCGC 3 cut(s) 665, 1284, 1415
AspS9I GGNCC 1 cut(s) 1345
AsuC2I CCSGG 1 cut(s) 1162
AsuHPI GGTGA 3 cut(s) 307, 503, 848
AvaI CYCGRG 1 cut(s) 318
AvaII GGWCC 1 cut(s) 1345
BalI TGGCCA 1 cut(s) 1168
BanII GRGCYC 1 cut(s) 346
BbsI GAAGAC 2 cut(s) 369, 1249
Bbv12I GWGCWC 2 cut(s) 346, 1141
BbvI GCAGC 2 cut(s) 707, 1291
BccI CCATC 3 cut(s) 501, 1177, 1487
BceAI ACGGC 1 cut(s) 56
BciVI GTATCC 1 cut(s) 317
BcnI CCSGG 1 cut(s) 1162
BcoDI GTCTC 3 cut(s) 470, 1090, 1397
BfaI CTAG 6 cut(s) 27, 411, 443, 566, 1269, 1416
BfoI RGCGCY 2 cut(s) 666, 1416
BfuI GTATCC 1 cut(s) 317
BisI GCNGC 4 cut(s) 189, 661, 696, 1280
BlsI GCNGC 4 cut(s) 190, 662, 697, 1281
Bme1390I CCNGG 1 cut(s) 1162
Bme18I GGWCC 1 cut(s) 1345
BmeT110I CYCGRG 1 cut(s) 318
BmgT120I GGNCC 1 cut(s) 1345
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 1162
BmsI GCATC 1 cut(s) 1283
BpiI GAAGAC 2 cut(s) 369, 1249
BplI GAGNNNNNCTC 2 cut(s) 1128, 1160
BpuEI CTTGAG 1 cut(s) 1452
BpuMI CCSGG 1 cut(s) 1162
BsaAI YACGTR 1 cut(s) 464
BsaI GGTCTC 1 cut(s) 1090
BsaJI CCNNGG 5 cut(s) 319, 365, 832, 1079, 1118
Bsc4I CCNNNNNNNGG 1 cut(s) 691
Bse1I ACTGG 1 cut(s) 1348
Bse3DI GCAATG 1 cut(s) 1352
BseDI CCNNGG 5 cut(s) 319, 365, 832, 1079, 1118
BseGI GGATG 4 cut(s) 529, 862, 1169, 1498
BseLI CCNNNNNNNGG 1 cut(s) 691
BseMI GCAATG 1 cut(s) 1352
BseMII CTCAG 3 cut(s) 217, 668, 815
BseNI ACTGG 1 cut(s) 1348
BseRI GAGGAG 2 cut(s) 372, 1182
BseXI GCAGC 2 cut(s) 707, 1291
Bsh1236I CGCG 1 cut(s) 1284
BshFI GGCC 4 cut(s) 283, 370, 1117, 1168
BsiHKAI GWGCWC 2 cut(s) 346, 1141
BsiHKCI CYCGRG 1 cut(s) 318
BsiSI CCGG 2 cut(s) 353, 1162
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 1 cut(s) 691
BsmAI GTCTC 3 cut(s) 470, 1090, 1397
BsmFI GGGAC 1 cut(s) 183
BsmI GAATGC 1 cut(s) 1086
BsnI GGCC 4 cut(s) 283, 370, 1117, 1168
Bso31I GGTCTC 1 cut(s) 1090
BsoBI CYCGRG 1 cut(s) 318
Bsp1286I GDGCHC 2 cut(s) 346, 1141
Bsp143I GATC 2 cut(s) 305, 826
Bsp19I CCATGG 1 cut(s) 832
BspACI CCGC 6 cut(s) 188, 428, 521, 660, 931, 1284
BspANI GGCC 4 cut(s) 283, 370, 1117, 1168
BspCNI CTCAG 3 cut(s) 216, 669, 814
BspFNI CGCG 1 cut(s) 1284
BspHI TCATGA 1 cut(s) 954
BspLI GGNNCC 1 cut(s) 256
BspTNI GGTCTC 1 cut(s) 1090
BsrBI CCGCTC 1 cut(s) 933
BsrDI GCAATG 1 cut(s) 1352
BsrI ACTGG 1 cut(s) 1348
BssECI CCNNGG 5 cut(s) 319, 365, 832, 1079, 1118
BssMI GATC 2 cut(s) 305, 826
BssT1I CCWWGG 3 cut(s) 365, 832, 1118
Bst4CI ACNGT 3 cut(s) 535, 1252, 1391
Bst6I CTCTTC 1 cut(s) 164
BstBAI YACGTR 1 cut(s) 464
BstC8I GCNNGC 2 cut(s) 1359, 1486
BstDEI CTNAG 5 cut(s) 203, 227, 677, 784, 801
BstDSI CCRYGG 1 cut(s) 832
BstEII GGTNACC 1 cut(s) 422
BstF5I GGATG 4 cut(s) 529, 862, 1169, 1498
BstFNI CGCG 1 cut(s) 1284
BstH2I RGCGCY 2 cut(s) 666, 1416
BstHHI GCGC 3 cut(s) 665, 1284, 1415
BstKTI GATC 2 cut(s) 308, 829
BstMAI GTCTC 3 cut(s) 470, 1090, 1397
BstMBI GATC 2 cut(s) 305, 826
BstMWI GCNNNNNNNGC 3 cut(s) 671, 701, 1123
BstNSI RCATGY 1 cut(s) 1153
BstPI GGTNACC 1 cut(s) 422
BstSCI CCNGG 1 cut(s) 1160
BstSNI TACGTA 1 cut(s) 464
BstUI CGCG 1 cut(s) 1284
BstV1I GCAGC 2 cut(s) 707, 1291
BstV2I GAAGAC 2 cut(s) 369, 1249
BstXI CCANNNNNNTGG 3 cut(s) 599, 744, 1023
BsuI GTATCC 1 cut(s) 317
BsuRI GGCC 4 cut(s) 283, 370, 1117, 1168
BtgI CCRYGG 1 cut(s) 832
BtgZI GCGATG 2 cut(s) 520, 1260
BtsCI GGATG 4 cut(s) 529, 862, 1169, 1498
BtsI GCAGTG 2 cut(s) 705, 1461
BtsIMutI CAGTG 3 cut(s) 705, 757, 1461
Cac8I GCNNGC 2 cut(s) 1359, 1486
CciI TCATGA 1 cut(s) 954
CfoI GCGC 3 cut(s) 665, 1284, 1415
Cfr13I GGNCC 1 cut(s) 1345
Csp6I GTAC 5 cut(s) 452, 461, 465, 574, 589
CviQI GTAC 5 cut(s) 452, 461, 465, 574, 589
DdeI CTNAG 5 cut(s) 203, 227, 677, 784, 801
DpnI GATC 2 cut(s) 307, 828
DpnII GATC 2 cut(s) 305, 826
DraIII CACNNNGTG 1 cut(s) 1164
DrdI GACNNNNNNGTC 2 cut(s) 533, 788
DseDI GACNNNNNNGTC 2 cut(s) 533, 788
EaeI YGGCCR 1 cut(s) 1166
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
EciI GGCGGA 1 cut(s) 536
Ecl136II GAGCTC 1 cut(s) 344
Eco105I TACGTA 1 cut(s) 464
Eco130I CCWWGG 3 cut(s) 365, 832, 1118
Eco147I AGGCCT 1 cut(s) 1117
Eco24I GRGCYC 1 cut(s) 346
Eco31I GGTCTC 1 cut(s) 1090
Eco32I GATATC 1 cut(s) 734
Eco47I GGWCC 1 cut(s) 1345
Eco47III AGCGCT 1 cut(s) 1414
Eco53kI GAGCTC 1 cut(s) 344
Eco88I CYCGRG 1 cut(s) 318
Eco91I GGTNACC 1 cut(s) 422
EcoICRI GAGCTC 1 cut(s) 344
EcoO65I GGTNACC 1 cut(s) 422
EcoRI GAATTC 1 cut(s) 607
EcoRV GATATC 1 cut(s) 734
EcoT14I CCWWGG 3 cut(s) 365, 832, 1118
EcoT38I GRGCYC 1 cut(s) 346
ErhI CCWWGG 3 cut(s) 365, 832, 1118
FalI AAGNNNNNCTT 2 cut(s) 614, 646
FaqI GGGAC 1 cut(s) 183
FauI CCCGC 1 cut(s) 435
FauNDI CATATG 1 cut(s) 1001
Fnu4HI GCNGC 4 cut(s) 189, 661, 696, 1280
FokI GGATG 4 cut(s) 536, 849, 1156, 1505
FriOI GRGCYC 1 cut(s) 346
Fsp4HI GCNGC 4 cut(s) 189, 661, 696, 1280
FspBI CTAG 6 cut(s) 27, 411, 443, 566, 1269, 1416
GlaI GCGC 3 cut(s) 664, 1283, 1414
GluI GCNGC 4 cut(s) 189, 661, 696, 1280
HaeII RGCGCY 2 cut(s) 666, 1416
HaeIII GGCC 4 cut(s) 283, 370, 1117, 1168
HapII CCGG 2 cut(s) 353, 1162
HhaI GCGC 3 cut(s) 665, 1284, 1415
Hin6I GCGC 3 cut(s) 663, 1282, 1413
HinP1I GCGC 3 cut(s) 663, 1282, 1413
HincII GTYRAC 1 cut(s) 973
HindII GTYRAC 1 cut(s) 973
HinfI GANTC 3 cut(s) 789, 938, 1211
HpaII CCGG 2 cut(s) 353, 1162
HphI GGTGA 3 cut(s) 307, 503, 848
Hpy166II GTNNAC 3 cut(s) 136, 973, 1289
Hpy188I TCNGA 8 cut(s) 206, 245, 613, 678, 822, 937, 1083, 1224
Hpy188III TCNNGA 6 cut(s) 84, 566, 803, 866, 955, 1269
Hpy8I GTNNAC 3 cut(s) 136, 973, 1289
HpyAV CCTTC 4 cut(s) 159, 265, 381, 1232
HpyCH4III ACNGT 3 cut(s) 535, 1252, 1391
HpyCH4IV ACGT 2 cut(s) 463, 1366
HpyCH4V TGCA 6 cut(s) 66, 766, 1126, 1133, 1361, 1488
HpyF10VI GCNNNNNNNGC 3 cut(s) 671, 701, 1123
HpyF3I CTNAG 5 cut(s) 203, 227, 677, 784, 801
HpySE526I ACGT 2 cut(s) 463, 1366
HspAI GCGC 3 cut(s) 663, 1282, 1413
Kzo9I GATC 2 cut(s) 305, 826
LmnI GCTCC 6 cut(s) 56, 260, 349, 938, 1083, 1195
Lsp1109I GCAGC 2 cut(s) 707, 1291
LweI GCATC 1 cut(s) 1283
MaeI CTAG 6 cut(s) 27, 411, 443, 566, 1269, 1416
MaeII ACGT 2 cut(s) 463, 1366
MaeIII GTNAC 6 cut(s) 88, 313, 422, 491, 680, 1252
MalI GATC 2 cut(s) 307, 828
MbiI CCGCTC 1 cut(s) 933
MboI GATC 2 cut(s) 305, 826
MboII GAAGA 5 cut(s) 151, 369, 907, 1254, 1293
MfeI CAATTG 1 cut(s) 1021
MhlI GDGCHC 2 cut(s) 346, 1141
MlsI TGGCCA 1 cut(s) 1168
MluCI AATT 7 cut(s) 143, 246, 550, 607, 1021, 1338, 1500
MluNI TGGCCA 1 cut(s) 1168
MlyI GAGTC 2 cut(s) 798, 947
MmeI TCCRAC 2 cut(s) 693, 1197
Mox20I TGGCCA 1 cut(s) 1168
MroXI GAANNNNTTC 1 cut(s) 180
MscI TGGCCA 1 cut(s) 1168
MseI TTAA 4 cut(s) 396, 689, 945, 1458
MslI CAYNNNNRTG 2 cut(s) 293, 602
Msp20I TGGCCA 1 cut(s) 1168
MspA1I CMGCKG 1 cut(s) 188
MspI CCGG 2 cut(s) 353, 1162
MspR9I CCNGG 1 cut(s) 1162
MunI CAATTG 1 cut(s) 1021
Mva1269I GAATGC 1 cut(s) 1086
MvnI CGCG 1 cut(s) 1284
MwoI GCNNNNNNNGC 3 cut(s) 671, 701, 1123
NciI CCSGG 1 cut(s) 1162
NcoI CCATGG 1 cut(s) 832
NdeI CATATG 1 cut(s) 1001
NdeII GATC 2 cut(s) 305, 826
NlaIV GGNNCC 1 cut(s) 256
NmuCI GTSAC 2 cut(s) 313, 491
NspI RCATGY 1 cut(s) 1153
PagI TCATGA 1 cut(s) 954
PceI AGGCCT 1 cut(s) 1117
PciI ACATGT 1 cut(s) 1149
PcsI WCGNNNNNNNCGW 1 cut(s) 460
PctI GAATGC 1 cut(s) 1086
PdmI GAANNNNTTC 1 cut(s) 180
PfeI GAWTC 1 cut(s) 1211
PkrI GCNGC 4 cut(s) 190, 662, 697, 1281
PleI GAGTC 2 cut(s) 797, 946
PpsI GAGTC 2 cut(s) 797, 946
Ppu21I YACGTR 1 cut(s) 464
PscI ACATGT 1 cut(s) 1149
Psp124BI GAGCTC 1 cut(s) 346
Psp1406I AACGTT 1 cut(s) 1366
PspEI GGTNACC 1 cut(s) 422
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 1 cut(s) 1345
RsaI GTAC 5 cut(s) 453, 462, 466, 575, 590
RsaNI GTAC 5 cut(s) 452, 461, 465, 574, 589
RseI CAYNNNNRTG 2 cut(s) 293, 602
SacI GAGCTC 1 cut(s) 346
SaqAI TTAA 4 cut(s) 396, 689, 945, 1458
SatI GCNGC 4 cut(s) 189, 661, 696, 1280
Sau3AI GATC 2 cut(s) 305, 826
Sau96I GGNCC 1 cut(s) 1345
SchI GAGTC 2 cut(s) 798, 947
ScrFI CCNGG 1 cut(s) 1162
SduI GDGCHC 2 cut(s) 346, 1141
SfaNI GCATC 1 cut(s) 1283
SinI GGWCC 1 cut(s) 1345
SmiMI CAYNNNNRTG 2 cut(s) 293, 602
SmlI CTYRAG 1 cut(s) 1467
SmoI CTYRAG 1 cut(s) 1467
SnaBI TACGTA 1 cut(s) 464
Sse9I AATT 7 cut(s) 143, 246, 550, 607, 1021, 1338, 1500
SseBI AGGCCT 1 cut(s) 1117
SsiI CCGC 6 cut(s) 188, 428, 521, 660, 931, 1284
SspMI CTAG 6 cut(s) 27, 411, 443, 566, 1269, 1416
SstI GAGCTC 1 cut(s) 346
StuI AGGCCT 1 cut(s) 1117
StyD4I CCNGG 1 cut(s) 1160
StyI CCWWGG 3 cut(s) 365, 832, 1118
TaaI ACNGT 3 cut(s) 535, 1252, 1391
TaiI ACGT 2 cut(s) 466, 1369
TaqI TCGA 5 cut(s) 391, 633, 1104, 1304, 1386
TasI AATT 7 cut(s) 143, 246, 550, 607, 1021, 1338, 1500
TauI GCSGC 2 cut(s) 191, 663
TfiI GAWTC 1 cut(s) 1211
Tru1I TTAA 4 cut(s) 396, 689, 945, 1458
Tru9I TTAA 4 cut(s) 396, 689, 945, 1458
TscAI CASTG 3 cut(s) 705, 757, 1468
TseFI GTSAC 2 cut(s) 313, 491
TseI GCWGC 2 cut(s) 695, 1279
Tsp45I GTSAC 2 cut(s) 313, 491
TspDTI ATGAA 8 cut(s) 275, 597, 620, 806, 941, 971, 1318, 1461
TspGWI ACGGA 2 cut(s) 1108, 1170
TspRI CASTG 3 cut(s) 705, 757, 1468
VpaK11BI GGWCC 1 cut(s) 1345
XapI RAATTY 2 cut(s) 607, 1338
XbaI TCTAGA 2 cut(s) 565, 1268
XceI RCATGY 1 cut(s) 1153
XmnI GAANNNNTTC 1 cut(s) 180
XspI CTAG 6 cut(s) 27, 411, 443, 566, 1269, 1416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.